Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Forward (+)

41164695 .. 41168286

Gene Structure 3592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1287200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAGTTTTTCCCTTTTTGGTAATGTTTTCTTCTGCATGCTATATAAAGTTGTTCACATGTGGAAAGCTCGCTCGCAGGCCATTTTGAGTGTTGTAAGGAACCTTGGAGCTGACTTTTTCTGTCTACAGGAAGTTGATGAGTATGACAGCTTTTACAAAGGAAATATGGAGAGCAATGGGTATTCTAGTACGTATATCCAGAGAAGTGGGCAAAAGCGTGACGGATGTGGAATTTTTTATAAACACGAAATGGCAGATTTGGTGTTAGAGGAGAAAATAGAATACAATGATCTTGTAAACTCAATTAAAGATGGAAATATACCCGGTGATGATAAACCAAATGATAAGGAAGCCACAGGAAATGAAGATGCCGGATCCAAAAATGGTTCAACAGTAGAGACCACTCAGGATCGTGGAGATCCTAATGATCCTCGTGTCAGACTAAAACGTGATTGTGTTGGAATTATGGCAGCATTCAAGTTAAAACATCCTTGTAATCATTTTGTTATTGTGGCAAACACACATCTTTACTGGGATCCCAGCTGGGTTGATGTTAAGCTTGCACAAGCTAAATATCTTGTATCGCGTTTGGCTCAATTTAAAACATTAGTATCCGACAGATTTGAGTGCACTCCTTCATTGATTGTGGCTGGTGACTTCAATTCAGTTCCCGGGGATAAGGTTTACCAGTACCTTATTTCAGGCAACACTTCATCTGCACCAACAATGGATATTCTAGAAGATTTGCCTATTCCCTTGTGCAGCACCTACGCTTATACACGAGGTGAACCGCAATTTACAAATTGCACCCCTGGATTCACTGGTACGCTTGATTATATTTTCTTTTCCCCTTCTGACCACATAAAACCAGTCAGTTTTCTTGAGCTTCCGGGACCGGATTCCTCTGATGTGGATGGTGGATTACCAAACCTCTTTCACCCAAGTGATCATTTACCAGTTGGTGTGGAATTTGAGATATCCAGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

330

Amino Acids

36.79

Weight (kDa)

4.94

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	21 - 317	2.5e-19	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	124
AccII	CGCG	1 cut(s)	586
AciI	CCGC	1 cut(s)	791
AclWI	GGATC	7 cut(s)	369, 382, 413, 417, 422, 530, 543
AcsI	RAATTY	2 cut(s)	231, 968
AdeI	CACNNNGTG	1 cut(s)	785
AfaI	GTAC	3 cut(s)	190, 692, 826
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	390, 478, 661
AjnI	CCWGG	1 cut(s)	811
AleI	CACNNNNGTG	1 cut(s)	942
AluBI	AGCT	7 cut(s)	68, 110, 150, 543, 559, 569, 886
AluI	AGCT	7 cut(s)	68, 110, 150, 543, 559, 569, 886
Alw21I	GWGCWC	1 cut(s)	632
Alw26I	GTCTC	1 cut(s)	392
Alw44I	GTGCAC	1 cut(s)	628
AlwI	GGATC	7 cut(s)	369, 382, 413, 417, 422, 530, 543
Ama87I	CYCGRG	1 cut(s)	671
AoxI	GGCC	1 cut(s)	78
ApaLI	GTGCAC	1 cut(s)	628
ApeKI	GCWGC	2 cut(s)	470, 762
ApoI	RAATTY	2 cut(s)	231, 968
AspS9I	GGNCC	1 cut(s)	893
AsuC2I	CCSGG	4 cut(s)	324, 672, 673, 891
AsuHPI	GGTGA	4 cut(s)	338, 665, 797, 929
AvaI	CYCGRG	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	893
BaeGI	GKGCMC	1 cut(s)	632
BaeI	ACNNNNGTAYC	2 cut(s)	594, 627
BamHI	GGATCC	2 cut(s)	374, 535
BauI	CACGAG	2 cut(s)	432, 780
Bbv12I	GWGCWC	1 cut(s)	632
BbvI	GCAGC	2 cut(s)	482, 774
BccI	CCATC	2 cut(s)	305, 908
BciT130I	CCWGG	1 cut(s)	813
BciVI	GTATCC	1 cut(s)	622
BclI	TGATCA	1 cut(s)	946
BcnI	CCSGG	4 cut(s)	324, 672, 673, 891
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	2 cut(s)	186, 737
BfmI	CTRYAG	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	2 cut(s)	471, 763
BlsI	GCNGC	2 cut(s)	472, 764
Bme1390I	CCNGG	5 cut(s)	324, 672, 673, 813, 891
Bme18I	GGWCC	1 cut(s)	893
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	1 cut(s)	893
BmiI	GGNNCC	4 cut(s)	101, 376, 537, 894
BmrFI	CCNGG	5 cut(s)	324, 672, 673, 813, 891
BmrI	ACTGGG	1 cut(s)	541
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	541
BpuEI	CTTGAG	1 cut(s)	902
BpuMI	CCSGG	4 cut(s)	324, 672, 673, 891
BsaAI	YACGTR	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	4 cut(s)	103, 671, 672, 811
BsaWI	WCCGGW	1 cut(s)	895
Bse1I	ACTGG	5 cut(s)	536, 688, 826, 869, 956
Bse3DI	GCAATG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	813
BseDI	CCNNGG	4 cut(s)	103, 671, 672, 811
BseGI	GGATG	3 cut(s)	230, 487, 919
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	5 cut(s)	536, 688, 826, 869, 956
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	2 cut(s)	482, 774
BseYI	CCCAGC	2 cut(s)	539, 543
BsgI	GTGCAG	2 cut(s)	702, 781
Bsh1236I	CGCG	1 cut(s)	586
BshFI	GGCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	632
BsiHKCI	CYCGRG	1 cut(s)	671
BsiSI	CCGG	5 cut(s)	324, 372, 672, 890, 896
BslFI	GGGAC	1 cut(s)	906
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	906
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	671
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp143I	GATC	7 cut(s)	289, 374, 409, 418, 427, 535, 946
BspACI	CCGC	1 cut(s)	791
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	586
BspLI	GGNNCC	4 cut(s)	101, 376, 537, 894
BspPI	GGATC	7 cut(s)	369, 382, 413, 417, 422, 530, 543
BspTNI	GGTCTC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	181
BsrI	ACTGG	5 cut(s)	536, 688, 826, 869, 956
BssECI	CCNNGG	4 cut(s)	103, 671, 672, 811
BssMI	GATC	7 cut(s)	289, 374, 409, 418, 427, 535, 946
BssSI	CACGAG	2 cut(s)	432, 780
BssT1I	CCWWGG	1 cut(s)	103
Bst2BI	CACGAG	2 cut(s)	432, 780
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	1 cut(s)	394
BstBAI	YACGTR	1 cut(s)	192
BstC8I	GCNNGC	5 cut(s)	38, 70, 74, 78, 561
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	230, 487, 919
BstFNI	CGCG	1 cut(s)	586
BstKTI	GATC	7 cut(s)	292, 377, 412, 421, 430, 538, 949
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	7 cut(s)	289, 374, 409, 418, 427, 535, 946
BstNI	CCWGG	1 cut(s)	813
BstNSI	RCATGY	2 cut(s)	40, 61
BstSCI	CCNGG	5 cut(s)	322, 670, 671, 811, 889
BstSFI	CTRYAG	1 cut(s)	125
BstSLI	GKGCMC	1 cut(s)	632
BstSNI	TACGTA	1 cut(s)	192
BstUI	CGCG	1 cut(s)	586
BstV1I	GCAGC	2 cut(s)	482, 774
BstX2I	RGATCY	3 cut(s)	374, 418, 535
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstYI	RGATCY	3 cut(s)	374, 418, 535
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	230, 487, 919
BtsIMutI	CAGTG	1 cut(s)	819
Cac8I	GCNNGC	5 cut(s)	38, 70, 74, 78, 561
Cfr13I	GGNCC	1 cut(s)	893
Cfr9I	CCCGGG	1 cut(s)	671
Csp6I	GTAC	3 cut(s)	189, 691, 825
CviAII	CATG	2 cut(s)	37, 58
CviQI	GTAC	3 cut(s)	189, 691, 825
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	7 cut(s)	291, 376, 411, 420, 429, 537, 948
DpnII	GATC	7 cut(s)	289, 374, 409, 418, 427, 535, 946
DraI	TTTAAA	1 cut(s)	601
DraIII	CACNNNGTG	1 cut(s)	785
Eco105I	TACGTA	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	978
Eco47I	GGWCC	1 cut(s)	893
Eco88I	CYCGRG	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	811
EcoRV	GATATC	1 cut(s)	978
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	40, 61
FaqI	GGGAC	1 cut(s)	906
FatI	CATG	2 cut(s)	36, 57
FbaI	TGATCA	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	471, 763
FokI	GGATG	3 cut(s)	237, 474, 926
Fsp4HI	GCNGC	2 cut(s)	471, 763
FspBI	CTAG	2 cut(s)	186, 737
GluI	GCNGC	2 cut(s)	471, 763
GsaI	CCCAGC	2 cut(s)	543, 547
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	5 cut(s)	324, 372, 672, 890, 896
Hin1II	CATG	2 cut(s)	40, 61
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	2 cut(s)	816, 899
HpaII	CCGG	5 cut(s)	324, 372, 672, 890, 896
HphI	GGTGA	4 cut(s)	338, 665, 797, 929
Hpy166II	GTNNAC	6 cut(s)	55, 125, 298, 630, 685, 788
Hpy188I	TCNGA	4 cut(s)	440, 616, 856, 907
Hpy188III	TCNNGA	5 cut(s)	199, 407, 737, 881, 981
Hpy8I	GTNNAC	6 cut(s)	55, 125, 298, 630, 685, 788
HpyAV	CCTTC	2 cut(s)	645, 861
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	2 cut(s)	191, 448
HpyCH4V	TGCA	6 cut(s)	36, 563, 630, 719, 762, 807
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	2 cut(s)	191, 448
Hsp92II	CATG	2 cut(s)	40, 61
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	7 cut(s)	289, 374, 409, 418, 427, 535, 946
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	2 cut(s)	482, 774
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	186, 737
MaeII	ACGT	2 cut(s)	191, 448
MaeIII	GTNAC	2 cut(s)	218, 653
MalI	GATC	7 cut(s)	291, 376, 411, 420, 429, 537, 948
MboI	GATC	7 cut(s)	289, 374, 409, 418, 427, 535, 946
MboII	GAAGA	3 cut(s)	22, 377, 752
MflI	RGATCY	3 cut(s)	374, 418, 535
MhlI	GDGCHC	1 cut(s)	632
MluCI	AATT	8 cut(s)	231, 303, 462, 596, 661, 794, 802, 968
MmeI	TCCRAC	2 cut(s)	439, 639
MnlI	CCTC	5 cut(s)	262, 441, 776, 913, 941
MseI	TTAA	4 cut(s)	306, 482, 555, 600
MslI	CAYNNNNRTG	1 cut(s)	942
MspA1I	CMGCKG	1 cut(s)	543
MspI	CCGG	5 cut(s)	324, 372, 672, 890, 896
MspR9I	CCNGG	5 cut(s)	324, 672, 673, 813, 891
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	813
MvnI	CGCG	1 cut(s)	586
NciI	CCSGG	4 cut(s)	324, 672, 673, 891
NdeII	GATC	7 cut(s)	289, 374, 409, 418, 427, 535, 946
NlaIII	CATG	2 cut(s)	40, 61
NlaIV	GGNNCC	4 cut(s)	101, 376, 537, 894
NmuCI	GTSAC	2 cut(s)	218, 653
NspI	RCATGY	2 cut(s)	40, 61
OliI	CACNNNNGTG	1 cut(s)	942
PaeI	GCATGC	1 cut(s)	40
PciI	ACATGT	1 cut(s)	57
PctI	GAATGC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	816, 899
PfoI	TCCNGGA	1 cut(s)	889
PkrI	GCNGC	2 cut(s)	472, 764
Ppu21I	YACGTR	1 cut(s)	192
PscI	ACATGT	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	811
PspFI	CCCAGC	2 cut(s)	539, 543
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	4 cut(s)	101, 376, 537, 894
PspPI	GGNCC	1 cut(s)	893
PsuI	RGATCY	3 cut(s)	374, 418, 535
PvuII	CAGCTG	1 cut(s)	543
RsaI	GTAC	3 cut(s)	190, 692, 826
RsaNI	GTAC	3 cut(s)	189, 691, 825
RseI	CAYNNNNRTG	1 cut(s)	942
SaqAI	TTAA	4 cut(s)	306, 482, 555, 600
SatI	GCNGC	2 cut(s)	471, 763
Sau3AI	GATC	7 cut(s)	289, 374, 409, 418, 427, 535, 946
Sau96I	GGNCC	1 cut(s)	893
ScrFI	CCNGG	5 cut(s)	324, 672, 673, 813, 891
SduI	GDGCHC	1 cut(s)	632
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	893
SmaI	CCCGGG	1 cut(s)	673
SmiMI	CAYNNNNRTG	1 cut(s)	942
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SnaBI	TACGTA	1 cut(s)	192
SphI	GCATGC	1 cut(s)	40
Sse9I	AATT	8 cut(s)	231, 303, 462, 596, 661, 794, 802, 968
SsiI	CCGC	1 cut(s)	791
SspMI	CTAG	2 cut(s)	186, 737
StyD4I	CCNGG	5 cut(s)	322, 670, 671, 811, 889
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	2 cut(s)	194, 451
TasI	AATT	8 cut(s)	231, 303, 462, 596, 661, 794, 802, 968
TfiI	GAWTC	2 cut(s)	816, 899
Tru1I	TTAA	4 cut(s)	306, 482, 555, 600
Tru9I	TTAA	4 cut(s)	306, 482, 555, 600
TscAI	CASTG	1 cut(s)	826
TseFI	GTSAC	2 cut(s)	218, 653
TseI	GCWGC	2 cut(s)	470, 762
Tsp45I	GTSAC	2 cut(s)	218, 653
TspDTI	ATGAA	3 cut(s)	378, 627, 702
TspGWI	ACGGA	1 cut(s)	237
TspMI	CCCGGG	1 cut(s)	671
TspRI	CASTG	1 cut(s)	826
VneI	GTGCAC	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	893
XapI	RAATTY	2 cut(s)	231, 968
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	2 cut(s)	40, 61
XmaI	CCCGGG	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	2 cut(s)	186, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.