Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Reverse (-)

19559493 .. 19560187

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG091900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGAGCCCATCCGGATCCGACGTCAGCCACTCCGGCATGGCTGATGGCGAGAGTAGTGTTGAGGACAGAGTCGCCGTCGAGCCGGAACGACATGAACGGTTGGTTCCAAGATGCTATCAATTCTCAACCTTAGGTGGACGCGTGAATTATCAACCTAAGGTCGACGTGTGCATTAATCATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

61

Amino Acids

6.75

Weight (kDa)

5.41

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	141
AccIII	TCCGGA	1 cut(s)	11
AclWI	GGATC	2 cut(s)	9, 22
AcyI	GRCGYC	1 cut(s)	21
AflIII	ACRYGT	2 cut(s)	139, 165
AjiI	CACGTC	1 cut(s)	166
AlwI	GGATC	2 cut(s)	9, 22
Aor13HI	TCCGGA	1 cut(s)	11
AseI	ATTAAT	1 cut(s)	174
AxyI	CCTNAGG	2 cut(s)	130, 156
BamHI	GGATCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	8
BccI	CCATC	2 cut(s)	16, 38
BceAI	ACGGC	1 cut(s)	59
BglI	GCCNNNNNGGC	1 cut(s)	33
BmgBI	CACGTC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	16, 105
BmsI	GCATC	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	11
Bse21I	CCTNAGG	2 cut(s)	130, 156
BseAI	TCCGGA	1 cut(s)	11
BseGI	GGATG	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	12, 33, 83
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	14
BspEI	TCCGGA	1 cut(s)	11
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	16, 105
BspPI	GGATC	2 cut(s)	9, 22
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	130, 156
BstF5I	GGATG	1 cut(s)	8
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstUI	CGCG	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
Bsu36I	CCTNAGG	2 cut(s)	130, 156
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	8
CseI	GACGC	1 cut(s)	147
CviAII	CATG	2 cut(s)	37, 92
CviJI	RGCY	4 cut(s)	6, 27, 41, 82
CviKI_1	RGCY	4 cut(s)	6, 27, 41, 82
DdeI	CTNAG	2 cut(s)	130, 156
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	8
Eco81I	CCTNAGG	2 cut(s)	130, 156
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	40, 95
FaiI	YATR	4 cut(s)	38, 93, 180, 182
FatI	CATG	2 cut(s)	36, 91
FauNDI	CATATG	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	8
HapII	CCGG	3 cut(s)	12, 33, 83
HgaI	GACGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	40, 95
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	3 cut(s)	12, 33, 83
Hpy166II	GTNNAC	2 cut(s)	137, 163
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	2 cut(s)	137, 163
Hpy99I	CGWCG	3 cut(s)	23, 80, 167
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	2 cut(s)	21, 165
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	2 cut(s)	130, 156
HpySE526I	ACGT	2 cut(s)	21, 165
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	40, 95
Kpn2I	TCCGGA	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	3 cut(s)	25, 46, 96
LweI	GCATC	1 cut(s)	101
MaeII	ACGT	2 cut(s)	21, 165
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	119, 145
MluI	ACGCGT	1 cut(s)	139
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	1 cut(s)	55
MroI	TCCGGA	1 cut(s)	11
MseI	TTAA	1 cut(s)	174
MspI	CCGG	3 cut(s)	12, 33, 83
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	2 cut(s)	40, 95
NlaIV	GGNNCC	2 cut(s)	16, 105
PflFI	GACNNNGTC	1 cut(s)	68
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PshBI	ATTAAT	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	16, 105
PsuI	RGATCY	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	68
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	24, 131, 136, 157, 162, 168
SfaNI	GCATC	1 cut(s)	101
Sse9I	AATT	2 cut(s)	119, 145
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	2 cut(s)	24, 168
TaqI	TCGA	2 cut(s)	78, 162
TasI	AATT	2 cut(s)	119, 145
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	108
Tth111I	GACNNNGTC	1 cut(s)	68
VspI	ATTAAT	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	162
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.