Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Forward (+)

10880095 .. 10881379

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTCGTATAACATTTTGGCTCAGGCGTATGTGAAGAGCTCCTTGTTTCCCCACTCTCCATCTTCTTGTCTCAAGTGGAAAGCCCGCTCGCAGGCAATTTTGAGTGTTCTCAAGAACCTTGGAGTCGACTCTCTGCCTACAGTTACCTCCCTCTTTCCTCGTAATGTCAGCATGTTTGGAGTTTCAAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

64

Amino Acids

6.99

Weight (kDa)

10.14

Isoelectric Point (pI)

69.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	186
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	41
BccI	CCATC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	2 cut(s)	56, 95
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	41
BspACI	CCGC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	34
BspQI	GCTCTTC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	3 cut(s)	85, 89, 93
BstDEI	CTNAG	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	138
Cac8I	GCNNGC	3 cut(s)	85, 89, 93
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	3 cut(s)	20, 39, 83
CviKI_1	RGCY	3 cut(s)	20, 39, 83
DdeI	CTNAG	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	1 cut(s)	175
FaiI	YATR	3 cut(s)	9, 30, 173
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	1 cut(s)	171
FauI	CCCGC	1 cut(s)	92
FblI	GTMKAC	1 cut(s)	126
FriOI	GRGCYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	123, 128
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	175
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	2 cut(s)	8, 77
MaeIII	GTNAC	1 cut(s)	142
MbiI	CCGCTC	1 cut(s)	87
MboII	GAAGA	2 cut(s)	46, 54
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	96
MlyI	GAGTC	2 cut(s)	122, 132
MnlI	CCTC	3 cut(s)	157, 161, 168
MseI	TTAA	1 cut(s)	193
NlaIII	CATG	1 cut(s)	175
NspI	RCATGY	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	29
PleI	GAGTC	2 cut(s)	122, 131
PpsI	GAGTC	2 cut(s)	122, 131
Psp124BI	GAGCTC	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	41
SalI	GTCGAC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	193
SchI	GAGTC	2 cut(s)	122, 132
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	3 cut(s)	41, 120, 149
SfcI	CTRYAG	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	71, 110
SmoI	CTYRAG	2 cut(s)	71, 110
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	1 cut(s)	85
SstI	GAGCTC	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	193
Tru9I	TTAA	1 cut(s)	193
XceI	RCATGY	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.