Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Reverse (-)

32274354 .. 32279807

Gene Structure 5454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19224

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCTGCGGAGGACGACTATTCCTGTGCTTCCCCGCCTACCCATTCCCTTCTTCTCCTTAACAAGTGGCAGGTCTGTTCCGACCAAAATGAGCTCAACCCAATCACCAATCAAACTCCCAAGATTTGTTTCTGTTCAAGAGAGTGGCATCTCTTCTCTAAGCAAACCTGATGGTATCAGGTTTAGTCTTGTGTCGTATAACATTTTGGCTCAGGCGTATGTGAAGAGCTCCTTGTTTCCCCACTCTCCATCTTCTTGTCTCAAGTGGAAAGCCCGCTCACAGGCAATTTTGAGTGTTCTTAAGAACCTTGGAGTTGACTTTCTCTGCCTACAGGAAGTTGATGAGTACGAGAGCTTTTACAAAGGAAATATGGAGAGCAGTGGTTATTCCAGTACCTACATTCAGAGAAGTGGGCAAAAGCGTGACGGATGTGGAATTTTTTATAAGCATAACATGGCAGAGTTGGTGTTAGAGGATATTATAGATTACAATGATCTTGTAAACTCAACTCAAGAGGGAAACGTTCTGGATGATGATAAACAATATGACAAGGACGCTATTGCAAGCAAAGATCCTGGATCCAAAAATGGTTCAAAATCAAAAAGCACTCAGGATCGTGGAGATCCTAATGATCCCCGTGTCAGACTAAAACGTGATTGTGTAGGACTTATAGCAGCATTCAAGCTTAAAAATCCTTCACAAAATGTTGTTATTGTGGCAAACACACACATTTACTGGGATCCAGAGTGGGCAGACGTTAAGCTTGCACAAGCTAAATATCTACTGTCACGCTTAGCTCGATTTAAAAAGTTGGTATCAGATAAGTTTGAGTGCACCCCATCATTAATTGTAGCTGGTGACTTCAATTCAACCCCAGGCGATAAGGTTTACCAGTATCTTATTTCCGGCAACTCTTCATCTGCACCAACGCTTGATGTTGTTGAAGATCTGCCTATTCCTTTGTGCAGTGTCTACGGTTCTACAAGGGGTGAACCACCTTTTACGAATTACACCCCTGGCTTCACAGGCACACTGGATTATATATTCTTTTCCCCTAGTGACAACATACAACCAGTCAGTTTCCTTGAGCTTCCAGAACCAGAATCCTCTGATATTGTTGGAGGATTACCAAACTTTAATCACCCAAGCGACCATTTACCAATTGGTGCTGAGTTTGTGATATCCCGGGAATATATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

400

Amino Acids

44.34

Weight (kDa)

6.03

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	65 - 385	8.4e-20	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
Acc36I	ACCTGC	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	972
AciI	CCGC	3 cut(s)	7, 34, 274
AclI	AACGTT	1 cut(s)	522
AclWI	GGATC	8 cut(s)	566, 573, 586, 617, 621, 626, 734, 747
AcsI	RAATTY	1 cut(s)	435
AfaI	GTAC	2 cut(s)	347, 394
AfiI	CCNNNNNNNGG	1 cut(s)	280
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	6 cut(s)	137, 594, 682, 865, 870, 944
AjnI	CCWGG	3 cut(s)	574, 874, 1015
AjuI	GAANNNNNNNTTGG	2 cut(s)	112, 144
AluBI	AGCT	9 cut(s)	93, 228, 354, 685, 763, 773, 797, 854, 1090
AluI	AGCT	9 cut(s)	93, 228, 354, 685, 763, 773, 797, 854, 1090
Alw21I	GWGCWC	3 cut(s)	95, 230, 836
Alw26I	GTCTC	1 cut(s)	263
Alw44I	GTGCAC	1 cut(s)	832
AlwI	GGATC	8 cut(s)	566, 573, 586, 617, 621, 626, 734, 747
Ama87I	CYCGRG	1 cut(s)	1185
ApaLI	GTGCAC	1 cut(s)	832
ApeKI	GCWGC	2 cut(s)	4, 674
ApoI	RAATTY	1 cut(s)	435
AseI	ATTAAT	1 cut(s)	845
Asp700I	GAANNNNTTC	1 cut(s)	1194
AsuC2I	CCSGG	2 cut(s)	1186, 1187
AsuHPI	GGTGA	4 cut(s)	96, 869, 1001, 1133
AvaI	CYCGRG	1 cut(s)	1185
BaeGI	GKGCMC	1 cut(s)	836
BamHI	GGATCC	2 cut(s)	578, 739
BanII	GRGCYC	2 cut(s)	95, 230
Bbv12I	GWGCWC	3 cut(s)	95, 230, 836
BbvI	GCAGC	1 cut(s)	686
BccI	CCATC	3 cut(s)	164, 256, 847
BciT130I	CCWGG	3 cut(s)	576, 876, 1017
BcnI	CCSGG	2 cut(s)	1186, 1187
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	1056
BfmI	CTRYAG	1 cut(s)	329
BfrI	CTTAAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	60
BglII	AGATCT	1 cut(s)	946
BisI	GCNGC	2 cut(s)	5, 675
BlpI	GCTNAGC	1 cut(s)	793
BlsI	GCNGC	2 cut(s)	6, 676
Bme1390I	CCNGG	5 cut(s)	576, 876, 1017, 1186, 1187
BmeT110I	CYCGRG	1 cut(s)	1185
BmiI	GGNNCC	2 cut(s)	580, 741
BmrFI	CCNGG	5 cut(s)	576, 876, 1017, 1186, 1187
BmrI	ACTGGG	1 cut(s)	745
BmsI	GCATC	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	745
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	793
BpuEI	CTTGAG	3 cut(s)	245, 495, 1106
BpuMI	CCSGG	2 cut(s)	1186, 1187
BsaJI	CCNNGG	4 cut(s)	307, 874, 1015, 1185
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	5 cut(s)	390, 740, 892, 1038, 1073
BseBI	CCWGG	3 cut(s)	576, 876, 1017
BseDI	CCNNGG	4 cut(s)	307, 874, 1015, 1185
BseGI	GGATG	2 cut(s)	434, 535
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	3 cut(s)	224, 623, 1161
BseNI	ACTGG	5 cut(s)	390, 740, 892, 1038, 1073
BseSI	GKGCMC	1 cut(s)	836
BseXI	GCAGC	1 cut(s)	686
BsgI	GTGCAG	2 cut(s)	906, 985
BsiHKAI	GWGCWC	3 cut(s)	95, 230, 836
BsiHKCI	CYCGRG	1 cut(s)	1185
BsiSI	CCGG	2 cut(s)	906, 1186
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	677
BsoBI	CYCGRG	1 cut(s)	1185
Bsp1286I	GDGCHC	3 cut(s)	95, 230, 836
Bsp143I	GATC	8 cut(s)	493, 571, 578, 613, 622, 631, 739, 946
Bsp1720I	GCTNAGC	1 cut(s)	793
BspACI	CCGC	3 cut(s)	7, 34, 274
BspCNI	CTCAG	3 cut(s)	223, 622, 1162
BspLI	GGNNCC	2 cut(s)	580, 741
BspMI	ACCTGC	1 cut(s)	60
BspPI	GGATC	8 cut(s)	566, 573, 586, 617, 621, 626, 734, 747
BspQI	GCTCTTC	1 cut(s)	218
BspTI	CTTAAG	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	276
BsrI	ACTGG	5 cut(s)	390, 740, 892, 1038, 1073
BssECI	CCNNGG	4 cut(s)	307, 874, 1015, 1185
BssMI	GATC	8 cut(s)	493, 571, 578, 613, 622, 631, 739, 946
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	3 cut(s)	576, 876, 1017
Bst4CI	ACNGT	2 cut(s)	786, 977
Bst6I	CTCTTC	3 cut(s)	157, 218, 919
BstAFI	CTTAAG	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	274, 565, 765
BstDEI	CTNAG	5 cut(s)	158, 210, 609, 793, 1170
BstF5I	GGATG	2 cut(s)	434, 535
BstKTI	GATC	8 cut(s)	496, 574, 581, 616, 625, 634, 742, 949
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	8 cut(s)	493, 571, 578, 613, 622, 631, 739, 946
BstMWI	GCNNNNNNNGC	1 cut(s)	1026
BstNI	CCWGG	3 cut(s)	576, 876, 1017
BstSCI	CCNGG	5 cut(s)	574, 874, 1015, 1184, 1185
BstSFI	CTRYAG	1 cut(s)	329
BstSLI	GKGCMC	1 cut(s)	836
BstV1I	GCAGC	1 cut(s)	686
BstX2I	RGATCY	5 cut(s)	571, 578, 622, 739, 946
BstYI	RGATCY	5 cut(s)	571, 578, 622, 739, 946
BtsCI	GGATG	2 cut(s)	434, 535
BtsI	GCAGTG	2 cut(s)	385, 973
BtsIMutI	CAGTG	3 cut(s)	385, 973, 1031
BveI	ACCTGC	1 cut(s)	60
Cac8I	GCNNGC	3 cut(s)	274, 565, 765
Cfr9I	CCCGGG	1 cut(s)	1185
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	346, 393
CviAII	CATG	1 cut(s)	454
CviQI	GTAC	2 cut(s)	346, 393
DdeI	CTNAG	5 cut(s)	158, 210, 609, 793, 1170
DpnI	GATC	8 cut(s)	495, 573, 580, 615, 624, 633, 741, 948
DpnII	GATC	8 cut(s)	493, 571, 578, 613, 622, 631, 739, 946
DraI	TTTAAA	1 cut(s)	805
Eam1104I	CTCTTC	3 cut(s)	157, 218, 919
EarI	CTCTTC	3 cut(s)	157, 218, 919
Ecl136II	GAGCTC	2 cut(s)	93, 228
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	2 cut(s)	95, 230
Eco32I	GATATC	1 cut(s)	1182
Eco53kI	GAGCTC	2 cut(s)	93, 228
Eco88I	CYCGRG	1 cut(s)	1185
EcoICRI	GAGCTC	2 cut(s)	93, 228
EcoRII	CCWGG	3 cut(s)	574, 874, 1015
EcoRV	GATATC	1 cut(s)	1182
EcoT14I	CCWWGG	1 cut(s)	307
EcoT38I	GRGCYC	2 cut(s)	95, 230
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	1 cut(s)	457
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	1 cut(s)	453
FauI	CCCGC	2 cut(s)	41, 281
FblI	GTMKAC	1 cut(s)	972
Fnu4HI	GCNGC	2 cut(s)	5, 675
FokI	GGATG	2 cut(s)	441, 542
FriOI	GRGCYC	2 cut(s)	95, 230
Fsp4HI	GCNGC	2 cut(s)	5, 675
FspBI	CTAG	1 cut(s)	1056
GluI	GCNGC	2 cut(s)	5, 675
HapII	CCGG	2 cut(s)	906, 1186
HgaI	GACGC	1 cut(s)	563
Hin1II	CATG	1 cut(s)	457
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	683, 761
HinfI	GANTC	1 cut(s)	1103
HpaII	CCGG	2 cut(s)	906, 1186
HphI	GGTGA	4 cut(s)	96, 869, 1001, 1133
Hpy166II	GTNNAC	6 cut(s)	316, 502, 834, 889, 973, 992
Hpy188I	TCNGA	5 cut(s)	81, 405, 644, 820, 1111
Hpy188III	TCNNGA	6 cut(s)	137, 512, 527, 611, 743, 1094
Hpy8I	GTNNAC	6 cut(s)	316, 502, 834, 889, 973, 992
HpyAV	CCTTC	2 cut(s)	58, 705
HpyCH4III	ACNGT	2 cut(s)	786, 977
HpyCH4IV	ACGT	3 cut(s)	522, 652, 756
HpyCH4V	TGCA	5 cut(s)	563, 767, 834, 923, 966
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1026
HpyF3I	CTNAG	5 cut(s)	158, 210, 609, 793, 1170
HpySE526I	ACGT	3 cut(s)	522, 652, 756
Hsp92II	CATG	1 cut(s)	457
Kzo9I	GATC	8 cut(s)	493, 571, 578, 613, 622, 631, 739, 946
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	1 cut(s)	686
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	1056
MaeII	ACGT	3 cut(s)	522, 652, 756
MaeIII	GTNAC	4 cut(s)	422, 786, 857, 1058
MalI	GATC	8 cut(s)	495, 573, 580, 615, 624, 633, 741, 948
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	8 cut(s)	493, 571, 578, 613, 622, 631, 739, 946
MboII	GAAGA	6 cut(s)	43, 144, 235, 243, 906, 956
MfeI	CAATTG	1 cut(s)	1161
MflI	RGATCY	5 cut(s)	571, 578, 622, 739, 946
MhlI	GDGCHC	3 cut(s)	95, 230, 836
MluCI	AATT	6 cut(s)	285, 435, 846, 865, 1006, 1161
MmeI	TCCRAC	2 cut(s)	104, 1099
MnlI	CCTC	5 cut(s)	3, 466, 508, 1115, 1117
MroXI	GAANNNNTTC	1 cut(s)	1194
MseI	TTAA	7 cut(s)	59, 300, 687, 759, 804, 845, 1137
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	2 cut(s)	906, 1186
MspR9I	CCNGG	5 cut(s)	576, 876, 1017, 1186, 1187
MunI	CAATTG	1 cut(s)	1161
Mva1269I	GAATGC	1 cut(s)	677
MvaI	CCWGG	3 cut(s)	576, 876, 1017
MwoI	GCNNNNNNNGC	1 cut(s)	1026
NciI	CCSGG	2 cut(s)	1186, 1187
NdeII	GATC	8 cut(s)	493, 571, 578, 613, 622, 631, 739, 946
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	2 cut(s)	580, 741
NmuCI	GTSAC	4 cut(s)	422, 786, 857, 1058
PciSI	GCTCTTC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	796
PctI	GAATGC	1 cut(s)	677
PdmI	GAANNNNTTC	1 cut(s)	1194
PfeI	GAWTC	1 cut(s)	1103
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	2 cut(s)	6, 676
PshBI	ATTAAT	1 cut(s)	845
PsiI	TTATAA	1 cut(s)	444
Psp124BI	GAGCTC	2 cut(s)	95, 230
Psp1406I	AACGTT	1 cut(s)	522
Psp6I	CCWGG	3 cut(s)	574, 874, 1015
PspGI	CCWGG	3 cut(s)	574, 874, 1015
PspN4I	GGNNCC	2 cut(s)	580, 741
PsuI	RGATCY	5 cut(s)	571, 578, 622, 739, 946
RsaI	GTAC	2 cut(s)	347, 394
RsaNI	GTAC	2 cut(s)	346, 393
SacI	GAGCTC	2 cut(s)	95, 230
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	7 cut(s)	59, 300, 687, 759, 804, 845, 1137
SatI	GCNGC	2 cut(s)	5, 675
Sau3AI	GATC	8 cut(s)	493, 571, 578, 613, 622, 631, 739, 946
ScrFI	CCNGG	5 cut(s)	576, 876, 1017, 1186, 1187
SduI	GDGCHC	3 cut(s)	95, 230, 836
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	329
SmaI	CCCGGG	1 cut(s)	1187
SmlI	CTYRAG	4 cut(s)	260, 299, 510, 1085
SmoI	CTYRAG	4 cut(s)	260, 299, 510, 1085
Sse9I	AATT	6 cut(s)	285, 435, 846, 865, 1006, 1161
SsiI	CCGC	3 cut(s)	7, 34, 274
SspMI	CTAG	1 cut(s)	1056
SstI	GAGCTC	2 cut(s)	95, 230
StyD4I	CCNGG	5 cut(s)	574, 874, 1015, 1184, 1185
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	2 cut(s)	786, 977
TaiI	ACGT	3 cut(s)	525, 655, 759
TaqI	TCGA	1 cut(s)	799
TasI	AATT	6 cut(s)	285, 435, 846, 865, 1006, 1161
TfiI	GAWTC	1 cut(s)	1103
Tru1I	TTAA	7 cut(s)	59, 300, 687, 759, 804, 845, 1137
Tru9I	TTAA	7 cut(s)	59, 300, 687, 759, 804, 845, 1137
TscAI	CASTG	3 cut(s)	385, 973, 1038
TseFI	GTSAC	4 cut(s)	422, 786, 857, 1058
TseI	GCWGC	2 cut(s)	4, 674
Tsp45I	GTSAC	4 cut(s)	422, 786, 857, 1058
TspDTI	ATGAA	1 cut(s)	906
TspGWI	ACGGA	1 cut(s)	441
TspMI	CCCGGG	1 cut(s)	1185
TspRI	CASTG	3 cut(s)	385, 973, 1038
Vha464I	CTTAAG	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	832
VspI	ATTAAT	1 cut(s)	845
XapI	RAATTY	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1160
XmaI	CCCGGG	1 cut(s)	1185
XmiI	GTMKAC	1 cut(s)	972
XmnI	GAANNNNTTC	1 cut(s)	1194
XspI	CTAG	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.