Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Reverse (-)

25697662 .. 25698956

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG276700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTGTTCTCTTCTGTTTTCTTTTTTCCTTTTTGGGTTTTGGGTTCAAAATCTAAAGGCACTCAGGATCGTGGAGATCCTAATGATCCCCGTGTCAGATTAAAACGTGATTGTGTAGGACTTATAGCAGCATTCAAGCTTAAAAATCCTTCACAAAATGTTGTTATTGTGGCAAACACACACATTTACTGGGATCCAGAGTGGGCAGACGTTAAGCTTGCACAAGCTAAATATCTACTGTCACGCTTAGCTCGATTTAAAAAGTTGGTATCAGATAAGTTTGAGTGCACCCCATCATTAATTGTAGCTGGTGACTTCAATTCAACCCCCGGCGATAAGGTTTATCAGTATCTTATTTCCGGCAACTCTTCATCTGCACCAACGCTTGATGTTGTTGAAGATCTGCCTATTCCTTTGTGCAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

142

Amino Acids

15.83

Weight (kDa)

8.79

Isoelectric Point (pI)

19.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	71, 75, 80, 188, 201
AgsI	TTSAA	5 cut(s)	48, 136, 319, 324, 398
AluBI	AGCT	5 cut(s)	139, 217, 227, 251, 308
AluI	AGCT	5 cut(s)	139, 217, 227, 251, 308
Alw21I	GWGCWC	1 cut(s)	290
Alw44I	GTGCAC	1 cut(s)	286
AlwI	GGATC	5 cut(s)	71, 75, 80, 188, 201
ApaLI	GTGCAC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	128
AseI	ATTAAT	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	330
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	1 cut(s)	129
BlpI	GCTNAGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	290
BsiSI	CCGG	2 cut(s)	330, 360
BsmI	GAATGC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	5 cut(s)	67, 76, 85, 193, 400
Bsp1720I	GCTNAGC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	5 cut(s)	71, 75, 80, 188, 201
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	5 cut(s)	67, 76, 85, 193, 400
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	2 cut(s)	16, 373
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	63, 247
BstKTI	GATC	5 cut(s)	70, 79, 88, 196, 403
BstMBI	GATC	5 cut(s)	67, 76, 85, 193, 400
BstSCI	CCNGG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	140
BstX2I	RGATCY	3 cut(s)	76, 193, 400
BstYI	RGATCY	3 cut(s)	76, 193, 400
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	219
CviJI	RGCY	5 cut(s)	139, 217, 227, 251, 308
CviKI_1	RGCY	5 cut(s)	139, 217, 227, 251, 308
DdeI	CTNAG	2 cut(s)	63, 247
DpnI	GATC	5 cut(s)	69, 78, 87, 195, 402
DpnII	GATC	5 cut(s)	67, 76, 85, 193, 400
DraI	TTTAAA	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	16, 373
EarI	CTCTTC	2 cut(s)	16, 373
FaiI	YATR	1 cut(s)	125
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	129
HapII	CCGG	2 cut(s)	330, 360
HindIII	AAGCTT	2 cut(s)	137, 215
HpaII	CCGG	2 cut(s)	330, 360
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	2 cut(s)	98, 274
Hpy188III	TCNNGA	2 cut(s)	65, 197
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	2 cut(s)	106, 210
HpyCH4V	TGCA	4 cut(s)	221, 288, 377, 420
HpyF3I	CTNAG	2 cut(s)	63, 247
HpySE526I	ACGT	2 cut(s)	106, 210
Kzo9I	GATC	5 cut(s)	67, 76, 85, 193, 400
LpnPI	CCDG	6 cut(s)	50, 175, 210, 294, 343, 373
Lsp1109I	GCAGC	1 cut(s)	140
MaeII	ACGT	2 cut(s)	106, 210
MaeIII	GTNAC	2 cut(s)	240, 311
MalI	GATC	5 cut(s)	69, 78, 87, 195, 402
MboI	GATC	5 cut(s)	67, 76, 85, 193, 400
MboII	GAAGA	3 cut(s)	3, 360, 410
MflI	RGATCY	3 cut(s)	76, 193, 400
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	2 cut(s)	300, 319
MseI	TTAA	5 cut(s)	101, 141, 213, 258, 299
MspI	CCGG	2 cut(s)	330, 360
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	5 cut(s)	67, 76, 85, 193, 400
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	240, 311
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PctI	GAATGC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	130
PshBI	ATTAAT	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	195
PsuI	RGATCY	3 cut(s)	76, 193, 400
SaqAI	TTAA	5 cut(s)	101, 141, 213, 258, 299
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	5 cut(s)	67, 76, 85, 193, 400
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	8 cut(s)	109, 141, 213, 219, 229, 253, 310, 342
Sse9I	AATT	2 cut(s)	300, 319
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	2 cut(s)	109, 213
TaqI	TCGA	1 cut(s)	253
TasI	AATT	2 cut(s)	300, 319
Tru1I	TTAA	5 cut(s)	101, 141, 213, 258, 299
Tru9I	TTAA	5 cut(s)	101, 141, 213, 258, 299
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	240, 311
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	2 cut(s)	240, 311
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	427
VneI	GTGCAC	1 cut(s)	286
VspI	ATTAAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.