Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Forward (+)

41163399 .. 41164692

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1287100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCTGAGGGCTTTTCCTGCCCTTTTCCGCCTACCCATTCCCTCTTTCCCCATAAGTAATAAGACCACAAGTGCTTTTAGCAGAATGAGCTCAACCCCATCACCAAAATGCCCAAAATTTATTCCTGTGGAAGAGAGTAAGATCTGCTCAATAAGCAAAGCTGATGGTATCAGGTTTAGTCTTGTGTCATATAACATTTTGGCTCAGGTGTACGTAAAGAGCTCTTTGTTTCCACACTCTCCATCCTCCTGTCTCAGGTCTAATATAAATCATAACTTAAGCATTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

97

Amino Acids

10.62

Weight (kDa)

10.04

Isoelectric Point (pI)

84.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	255
AflII	CTTAAG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	90, 161, 222
AluI	AGCT	3 cut(s)	90, 161, 222
Alw21I	GWGCWC	2 cut(s)	92, 224
Alw26I	GTCTC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	92, 224
Bbv12I	GWGCWC	2 cut(s)	92, 224
BbvCI	CCTCAGC	1 cut(s)	5
BccI	CCATC	3 cut(s)	106, 158, 250
BcoDI	GTCTC	1 cut(s)	257
BfrI	CTTAAG	1 cut(s)	277
BglII	AGATCT	1 cut(s)	141
Bpu10I	CCTNAGC	2 cut(s)	5, 204
BsaAI	YACGTR	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	218, 268
BsiHKAI	GWGCWC	2 cut(s)	92, 224
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	92, 224
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	28
BspCNI	CTCAG	2 cut(s)	217, 267
BspTI	CTTAAG	1 cut(s)	277
BssMI	GATC	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	277
BstBAI	YACGTR	1 cut(s)	214
BstDEI	CTNAG	3 cut(s)	5, 204, 254
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	242
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 87, 153
BstSNI	TACGTA	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	211
CviJI	RGCY	5 cut(s)	11, 90, 161, 203, 222
CviKI_1	RGCY	5 cut(s)	11, 90, 161, 203, 222
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	3 cut(s)	5, 204, 254
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	17
Ecl136II	GAGCTC	2 cut(s)	90, 222
Eco105I	TACGTA	1 cut(s)	214
Eco24I	GRGCYC	2 cut(s)	92, 224
Eco53kI	GAGCTC	2 cut(s)	90, 222
EcoICRI	GAGCTC	2 cut(s)	90, 222
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoT38I	GRGCYC	2 cut(s)	92, 224
FaiI	YATR	5 cut(s)	53, 190, 192, 266, 273
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	2 cut(s)	92, 224
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 87, 153
HpyF3I	CTNAG	3 cut(s)	5, 204, 254
HpySE526I	ACGT	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	141
LpnPI	CCDG	6 cut(s)	30, 138, 157, 191, 241, 262
MaeII	ACGT	1 cut(s)	213
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	1 cut(s)	143
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	2 cut(s)	92, 224
MluCI	AATT	1 cut(s)	116
MnlI	CCTC	2 cut(s)	52, 256
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	106
MspCI	CTTAAG	1 cut(s)	277
MwoI	GCNNNNNNNGC	3 cut(s)	17, 87, 153
NdeII	GATC	1 cut(s)	141
Ppu21I	YACGTR	1 cut(s)	214
Psp124BI	GAGCTC	2 cut(s)	92, 224
PsuI	RGATCY	1 cut(s)	141
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	106
SacI	GAGCTC	2 cut(s)	92, 224
SaqAI	TTAA	1 cut(s)	278
Sau3AI	GATC	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	92, 224
SetI	ASST	7 cut(s)	92, 163, 176, 210, 216, 224, 260
SgeI	CNNG	8 cut(s)	29, 81, 137, 184, 194, 218, 261, 268
SmiMI	CAYNNNNRTG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SnaBI	TACGTA	1 cut(s)	214
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	1 cut(s)	28
SstI	GAGCTC	2 cut(s)	92, 224
TaiI	ACGT	1 cut(s)	216
TasI	AATT	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.