Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006804

Physical Location & Seq

Genomic Coordinates Reverse (-)

11410766 .. 11412233

Gene Structure 1468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31812.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGTTTGAAGGAGGAATTTGAGGAGCACGCTGAGAAAGTGAATACGCTCACGGAGTTGCCATCCAACGAGGATTTGCTCATTCTCTACGGACTCTACAAGCAAGCCAAGTTTGGGCCTGTGGACACCAGTCGTCCTGGAATGTTCAGCATGAAGGAGAGAGCCAAGTGGGATGCTTGGAAGGCTGTTGAAGGGAAATCATCGGAAGAAGCCATGAATGACTATATCACTAAGGTCAAGCAACTCTTGGAAGTTGCTGCTTCCAAGGCTTCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001666 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0010876 GO:0016020 GO:0017076 GO:0030554 GO:0031210 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0036293 GO:0043167 GO:0043168 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050826 GO:0050896 GO:0050997 GO:0051179 GO:0051234 GO:0070405 GO:0070482 GO:0071702 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ACBP

Protein Analysis

92

Amino Acids

10.39

Weight (kDa)

5.19

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACBP	PF00887	4 - 79	8.2e-30	Acyl CoA binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31812
fragaria_vesca	FvH4_1g08340 FvH4_5g24090
malus_domestica	MD00G1002100.v1.1 MD02G1087600.v1.1 MD06G1017000.v1.1 MD15G1215200.v1.1
prunus_persica	Prupe.5G019500_v2.0.a1 Prupe.7G202100_v2.0.a1
pyrus_communis	pycom06g01370 pycom16g25520
rosa_chinensis	RchiOBHm_Chr7g0213621
rosa_laevigata	RLG00000016489
rosa_multiflora	Rmu_co8385225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245740
rosa_rugosa	Rorug02G0043800 Rorug07G0143300 Rorug07G0143400
rosa_samantha	Rh2AG091800 Rh2DG090600 Rh7AG276500 Rh7BG270700 Rh7CG295500 Rh7DG282700
rosa_wichuraiana	Rw0G023500 Rw7G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	10, 191, 273
AjnI	CCWGG	1 cut(s)	136
Alw21I	GWGCWC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	163
BoxI	GACNNNNGTC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	62, 178
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	114
BsnI	GGCC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	30, 105
BstDEI	CTNAG	2 cut(s)	33, 231
BstF5I	GGATG	2 cut(s)	62, 178
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 266
BstNI	CCWGG	1 cut(s)	138
BstPAI	GACNNNNGTC	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	62, 178
Cac8I	GCNNGC	2 cut(s)	30, 105
Cfr13I	GGNCC	1 cut(s)	116
CviAII	CATG	2 cut(s)	151, 214
CviJI	RGCY	6 cut(s)	107, 118, 164, 185, 212, 269
CviKI_1	RGCY	6 cut(s)	107, 118, 164, 185, 212, 269
DdeI	CTNAG	2 cut(s)	33, 231
Eco130I	CCWWGG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	2 cut(s)	154, 217
FaiI	YATR	3 cut(s)	152, 215, 225
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	2 cut(s)	150, 213
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	2 cut(s)	49, 185
Fsp4HI	GCNGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	154, 217
HinfI	GANTC	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	4 cut(s)	4, 148, 175, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 266
HpyF3I	CTNAG	2 cut(s)	33, 231
Hsp92II	CATG	2 cut(s)	154, 217
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	123, 132, 142, 150
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	7, 16, 64
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	182, 266
NlaIII	CATG	2 cut(s)	154, 217
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PshAI	GACNNNNGTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	116
SatI	GCNGC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	2 cut(s)	237, 278
SfaNI	GCATC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	264
TasI	AATT	1 cut(s)	17
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	167, 230
TspGWI	ACGGA	2 cut(s)	68, 105
XapI	RAATTY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.