Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006804

Physical Location & Seq

Genomic Coordinates Reverse (-)

11323698 .. 11325193

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0143300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGGTAGCAGCGGTTTCTGGCGATAAAAAGCACTTATCCTCGCACTCACCACAAGAGTTTGATTCTCGTCCTCCCCGTCCTCTCTTGAATCAAAGGAAATCGATGGAGTTAGGAGTTTCCAGGGGTAAAGAGCCCCTACCCTCGCGCTCACGACAAGAGTTTGACTCTCGCTCTCCTCGCGCTCTCATGGATCAAAAGAAAGAGGTAGAGGTAAGAGCCTCCGGTGGTGGTAAACAGAATTTACCCTCACACCCGCGACAAGAGTTCGATTCTCGTCTTCGCCCAAAATCAATGGAGTTAAGATCTGCGGACCGTAAAGAGCATTTACCTGCACAACCACAGAGAGAGCTCGAATCTAGTGAGGCCAAGTCGTCGAGGCGTGTATGGGATTGTGGCAGCTCGCTGTACGACTCGTTCGAGCTCAACTTGTTCAAACGTGAACTCGACTCGGCCATATCATGCAGAACCATGTCAATGCCTCACCTCTCCGATCGCCGAGCTCCGCTGCCGCAGCAGCCGCCACCCGCGGTAGTTGCCAAGAAACCCTCAAAACTTTCTAGATCACTTAATAAGCTCCTCCGCTCCGTTTTCAAGCCAAAGACAAGTTCAGGTCCCATTTTTAGAGTGCAAGAGCAGTCCAACAAAACTAAGGATGGGTTTTACGTAGTTTACGACAAGTCCGGTGCACTTACGACCATTCCTGAAGTAGTTCCTCATGAATTTAGTGGTTTCTCGCCGGAGATTGGGTCCTTGGTGAGGAGGACAGGGTCGGAGAGGTTCACAAGTACTGCTTCCATAAGTTCTATTGGTATTTCCTGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001666 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0010876 GO:0016020 GO:0017076 GO:0030554 GO:0031210 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0036293 GO:0043167 GO:0043168 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050826 GO:0050896 GO:0050997 GO:0051179 GO:0051234 GO:0070405 GO:0070482 GO:0071702 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ACBP

Protein Analysis

275

Amino Acids

30.73

Weight (kDa)

9.97

Isoelectric Point (pI)

78.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31812
fragaria_vesca	FvH4_1g08340 FvH4_5g24090
malus_domestica	MD00G1002100.v1.1 MD02G1087600.v1.1 MD06G1017000.v1.1 MD15G1215200.v1.1
prunus_persica	Prupe.5G019500_v2.0.a1 Prupe.7G202100_v2.0.a1
pyrus_communis	pycom06g01370 pycom16g25520
rosa_chinensis	RchiOBHm_Chr7g0213621
rosa_laevigata	RLG00000016489
rosa_multiflora	Rmu_co8385225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245740
rosa_rugosa	Rorug02G0043800 Rorug07G0143300 Rorug07G0143400
rosa_samantha	Rh2AG091800 Rh2DG090600 Rh7AG276500 Rh7BG270700 Rh7CG295500 Rh7DG282700
rosa_wichuraiana	Rw0G023500 Rw7G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccBSI	CCGCTC	1 cut(s)	585
AccII	CGCG	4 cut(s)	148, 183, 259, 530
AciI	CCGC	9 cut(s)	14, 257, 311, 506, 512, 521, 528, 530, 583
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	2 cut(s)	241, 722
AcuI	CTGAAG	1 cut(s)	726
AfaI	GTAC	2 cut(s)	410, 790
AfiI	CCNNNNNNNGG	2 cut(s)	746, 759
AgsI	TTSAA	3 cut(s)	91, 436, 595
AjnI	CCWGG	1 cut(s)	122
AjuI	GAANNNNNNNTTGG	2 cut(s)	592, 624
AluBI	AGCT	5 cut(s)	352, 402, 424, 503, 577
AluI	AGCT	5 cut(s)	352, 402, 424, 503, 577
Alw21I	GWGCWC	4 cut(s)	354, 426, 505, 691
Alw44I	GTGCAC	1 cut(s)	687
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	366, 453
ApaLI	GTGCAC	1 cut(s)	687
ApeKI	GCWGC	5 cut(s)	11, 399, 508, 514, 517
ApoI	RAATTY	2 cut(s)	241, 722
Asp700I	GAANNNNTTC	1 cut(s)	711
AspLEI	GCGC	2 cut(s)	150, 185
AspS9I	GGNCC	3 cut(s)	313, 614, 750
AsuHPI	GGTGA	3 cut(s)	42, 476, 769
AvaII	GGWCC	3 cut(s)	313, 614, 750
BaeGI	GKGCMC	1 cut(s)	691
BanII	GRGCYC	4 cut(s)	138, 354, 426, 505
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	4 cut(s)	354, 426, 505, 691
BbvI	GCAGC	5 cut(s)	23, 411, 495, 526, 529
BccI	CCATC	2 cut(s)	100, 650
BciT130I	CCWGG	1 cut(s)	124
BfaI	CTAG	2 cut(s)	360, 561
BfuAI	ACCTGC	1 cut(s)	340
BglII	AGATCT	1 cut(s)	305
BisI	GCNGC	7 cut(s)	12, 400, 509, 512, 515, 518, 521
BlsI	GCNGC	7 cut(s)	13, 401, 510, 513, 516, 519, 522
BmcAI	AGTACT	1 cut(s)	790
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	3 cut(s)	313, 614, 750
BmgT120I	GGNCC	3 cut(s)	313, 614, 750
BmiI	GGNNCC	2 cut(s)	616, 751
BmrFI	CCNGG	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	272
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
Bsa29I	ATCGAT	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	667
BsaJI	CCNNGG	3 cut(s)	123, 528, 753
BsaWI	WCCGGW	2 cut(s)	224, 683
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	2 cut(s)	746, 759
BseBI	CCWGG	1 cut(s)	124
BseCI	ATCGAT	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	123, 528, 753
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	2 cut(s)	746, 759
BseRI	GAGGAG	3 cut(s)	168, 569, 775
BseSI	GKGCMC	1 cut(s)	691
BseXI	GCAGC	5 cut(s)	23, 411, 495, 526, 529
BsgI	GTGCAG	1 cut(s)	318
Bsh1236I	CGCG	4 cut(s)	148, 183, 259, 530
Bsh1285I	CGRYCG	1 cut(s)	496
BshFI	GGCC	2 cut(s)	368, 455
BshVI	ATCGAT	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	496
BsiHKAI	GWGCWC	4 cut(s)	354, 426, 505, 691
BsiSI	CCGG	3 cut(s)	225, 684, 740
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	2 cut(s)	746, 759
BsmFI	GGGAC	1 cut(s)	600
BsnI	GGCC	2 cut(s)	368, 455
Bsp1286I	GDGCHC	5 cut(s)	138, 354, 426, 505, 691
Bsp143I	GATC	4 cut(s)	193, 305, 493, 563
BspACI	CCGC	9 cut(s)	14, 257, 311, 506, 512, 521, 528, 530, 583
BspANI	GGCC	2 cut(s)	368, 455
BspDI	ATCGAT	1 cut(s)	104
BspFNI	CGCG	4 cut(s)	148, 183, 259, 530
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	2 cut(s)	616, 751
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	201
BsrBI	CCGCTC	1 cut(s)	585
BssECI	CCNNGG	3 cut(s)	123, 528, 753
BssMI	GATC	4 cut(s)	193, 305, 493, 563
BssT1I	CCWWGG	1 cut(s)	753
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	667
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	651
BstDSI	CCRYGG	1 cut(s)	528
BstENI	CCTNNNNNAGG	1 cut(s)	757
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	4 cut(s)	148, 183, 259, 530
BstHHI	GCGC	2 cut(s)	150, 185
BstKTI	GATC	4 cut(s)	196, 308, 496, 566
BstMBI	GATC	4 cut(s)	193, 305, 493, 563
BstMCI	CGRYCG	1 cut(s)	496
BstMWI	GCNNNNNNNGC	5 cut(s)	180, 514, 517, 520, 536
BstNI	CCWGG	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	691
BstSNI	TACGTA	1 cut(s)	667
BstUI	CGCG	4 cut(s)	148, 183, 259, 530
BstV1I	GCAGC	5 cut(s)	23, 411, 495, 526, 529
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
Bsu15I	ATCGAT	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	368, 455
BsuTUI	ATCGAT	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	661
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	404
CciI	TCATGA	1 cut(s)	718
CfoI	GCGC	2 cut(s)	150, 185
Cfr13I	GGNCC	3 cut(s)	313, 614, 750
Cfr42I	CCGCGG	1 cut(s)	531
ClaI	ATCGAT	1 cut(s)	104
CpoI	CGGWCCG	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	409, 789
CspI	CGGWCCG	1 cut(s)	313
CviAII	CATG	4 cut(s)	190, 462, 472, 719
CviQI	GTAC	2 cut(s)	409, 789
DdeI	CTNAG	1 cut(s)	651
DpnI	GATC	4 cut(s)	195, 307, 495, 565
DpnII	GATC	4 cut(s)	193, 305, 493, 563
EaeI	YGGCCR	1 cut(s)	453
Ecl136II	GAGCTC	3 cut(s)	352, 424, 503
Eco105I	TACGTA	1 cut(s)	667
Eco130I	CCWWGG	1 cut(s)	753
Eco24I	GRGCYC	4 cut(s)	138, 354, 426, 505
Eco47I	GGWCC	3 cut(s)	313, 614, 750
Eco53kI	GAGCTC	3 cut(s)	352, 424, 503
Eco57I	CTGAAG	1 cut(s)	726
EcoICRI	GAGCTC	3 cut(s)	352, 424, 503
EcoNI	CCTNNNNNAGG	1 cut(s)	757
EcoO109I	RGGNCCY	2 cut(s)	614, 750
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	753
EcoT38I	GRGCYC	4 cut(s)	138, 354, 426, 505
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	4 cut(s)	193, 465, 475, 722
FaiI	YATR	7 cut(s)	191, 388, 458, 463, 473, 720, 800
FalI	AAGNNNNNCTT	2 cut(s)	778, 810
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	4 cut(s)	189, 461, 471, 718
FauI	CCCGC	2 cut(s)	264, 535
Fnu4HI	GCNGC	7 cut(s)	12, 400, 509, 512, 515, 518, 521
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	4 cut(s)	138, 354, 426, 505
Fsp4HI	GCNGC	7 cut(s)	12, 400, 509, 512, 515, 518, 521
FspBI	CTAG	2 cut(s)	360, 561
GlaI	GCGC	2 cut(s)	149, 184
GluI	GCNGC	7 cut(s)	12, 400, 509, 512, 515, 518, 521
HaeIII	GGCC	2 cut(s)	368, 455
HapII	CCGG	3 cut(s)	225, 684, 740
HhaI	GCGC	2 cut(s)	150, 185
Hin1II	CATG	4 cut(s)	193, 465, 475, 722
Hin6I	GCGC	2 cut(s)	148, 183
HinP1I	GCGC	2 cut(s)	148, 183
HinfI	GANTC	7 cut(s)	65, 91, 167, 272, 356, 413, 449
HpaII	CCGG	3 cut(s)	225, 684, 740
HphI	GGTGA	3 cut(s)	42, 476, 769
Hpy166II	GTNNAC	5 cut(s)	236, 443, 673, 689, 783
Hpy188I	TCNGA	2 cut(s)	493, 775
Hpy188III	TCNNGA	5 cut(s)	88, 153, 561, 704, 719
Hpy8I	GTNNAC	5 cut(s)	236, 443, 673, 689, 783
Hpy99I	CGWCG	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	2 cut(s)	439, 666
HpyCH4V	TGCA	4 cut(s)	335, 465, 631, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	180, 514, 517, 520, 536
HpyF3I	CTNAG	1 cut(s)	651
HpySE526I	ACGT	2 cut(s)	439, 666
Hsp92II	CATG	4 cut(s)	193, 465, 475, 722
HspAI	GCGC	2 cut(s)	148, 183
KspI	CCGCGG	1 cut(s)	531
Kzo9I	GATC	4 cut(s)	193, 305, 493, 563
LmnI	GCTCC	3 cut(s)	508, 582, 590
Lsp1109I	GCAGC	5 cut(s)	23, 411, 495, 526, 529
MaeI	CTAG	2 cut(s)	360, 561
MaeII	ACGT	2 cut(s)	439, 666
MalI	GATC	4 cut(s)	195, 307, 495, 565
MbiI	CCGCTC	1 cut(s)	585
MboI	GATC	4 cut(s)	193, 305, 493, 563
MboII	GAAGA	1 cut(s)	272
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	5 cut(s)	138, 354, 426, 505, 691
MluCI	AATT	2 cut(s)	241, 722
MlyI	GAGTC	3 cut(s)	161, 407, 443
MmeI	TCCRAC	2 cut(s)	666, 753
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	2 cut(s)	302, 570
MslI	CAYNNNNRTG	1 cut(s)	476
MspA1I	CMGCKG	3 cut(s)	14, 508, 530
MspI	CCGG	3 cut(s)	225, 684, 740
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MvnI	CGCG	4 cut(s)	148, 183, 259, 530
MwoI	GCNNNNNNNGC	5 cut(s)	180, 514, 517, 520, 536
NdeII	GATC	4 cut(s)	193, 305, 493, 563
NlaIII	CATG	4 cut(s)	193, 465, 475, 722
NlaIV	GGNNCC	2 cut(s)	616, 751
NmeAIII	GCCGAG	2 cut(s)	431, 524
PagI	TCATGA	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	3 cut(s)	76, 417, 672
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	4 cut(s)	65, 91, 272, 356
PflFI	GACNNNGTC	1 cut(s)	769
PkrI	GCNGC	7 cut(s)	13, 401, 510, 513, 516, 519, 522
Ple19I	CGATCG	1 cut(s)	496
PleI	GAGTC	3 cut(s)	161, 407, 443
PpsI	GAGTC	3 cut(s)	161, 407, 443
Ppu21I	YACGTR	1 cut(s)	667
PpuMI	RGGWCCY	2 cut(s)	614, 750
Psp124BI	GAGCTC	3 cut(s)	354, 426, 505
Psp5II	RGGWCCY	2 cut(s)	614, 750
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	616, 751
PspPI	GGNCC	3 cut(s)	313, 614, 750
PspPPI	RGGWCCY	2 cut(s)	614, 750
PsrI	GAACNNNNNNTAC	2 cut(s)	401, 433
PsuI	RGATCY	1 cut(s)	305
PsyI	GACNNNGTC	1 cut(s)	769
PvuI	CGATCG	1 cut(s)	496
RsaI	GTAC	2 cut(s)	410, 790
RsaNI	GTAC	2 cut(s)	409, 789
RseI	CAYNNNNRTG	1 cut(s)	476
Rsr2I	CGGWCCG	1 cut(s)	313
RsrII	CGGWCCG	1 cut(s)	313
SacI	GAGCTC	3 cut(s)	354, 426, 505
SacII	CCGCGG	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	302, 570
SatI	GCNGC	7 cut(s)	12, 400, 509, 512, 515, 518, 521
Sau3AI	GATC	4 cut(s)	193, 305, 493, 563
Sau96I	GGNCC	3 cut(s)	313, 614, 750
ScaI	AGTACT	1 cut(s)	790
SchI	GAGTC	3 cut(s)	161, 407, 443
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	5 cut(s)	138, 354, 426, 505, 691
Sfr303I	CCGCGG	1 cut(s)	531
SgrBI	CCGCGG	1 cut(s)	531
SinI	GGWCC	3 cut(s)	313, 614, 750
SmiMI	CAYNNNNRTG	1 cut(s)	476
SnaBI	TACGTA	1 cut(s)	667
Sse9I	AATT	2 cut(s)	241, 722
SsiI	CCGC	9 cut(s)	14, 257, 311, 506, 512, 521, 528, 530, 583
SspMI	CTAG	2 cut(s)	360, 561
SstI	GAGCTC	3 cut(s)	354, 426, 505
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	2 cut(s)	442, 669
TaqI	TCGA	6 cut(s)	104, 270, 354, 377, 420, 447
TasI	AATT	2 cut(s)	241, 722
TatI	WGTACW	1 cut(s)	788
TauI	GCSGC	2 cut(s)	514, 523
TfiI	GAWTC	4 cut(s)	65, 91, 272, 356
Tru1I	TTAA	2 cut(s)	302, 570
Tru9I	TTAA	2 cut(s)	302, 570
TseI	GCWGC	5 cut(s)	11, 399, 508, 514, 517
TspDTI	ATGAA	1 cut(s)	735
TspGWI	ACGGA	1 cut(s)	577
Tth111I	GACNNNGTC	1 cut(s)	769
VneI	GTGCAC	1 cut(s)	687
VpaK11BI	GGWCC	3 cut(s)	313, 614, 750
XagI	CCTNNNNNAGG	1 cut(s)	757
XapI	RAATTY	2 cut(s)	241, 722
XbaI	TCTAGA	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	2 cut(s)	360, 561
ZrmI	AGTACT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.