RLG00000016489

acyl-CoA-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006804
Physical Location & Seq
Forward (+)
7050609 .. 7053306
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016489

Sequence Viewer

Length: 375 bp
ATGTCAAGGTGGAACTTGCAGTCAAATTTGGATAGCGACATGAATTTGGAAGATCAGACTCCGATCTGCAGCTCTTCCTCAGTTCGGCTTCCACTAATTCGCTCTCTCCAAGAGGAATTTAAAGAGTATGCAGAGAAGGCCAAGTCTCTGCCCTCAACAACAAAGGATGCAGATAAGCTGGTACTCTACGGTCTATACAAGCAAGCAACCATCGGCTCCGTTAATACTAATCGACCTGGGTTCTTTAGCCCAACTGAGAGGGCCAAATGGGATGCTTGGAAAGCAGTTGAAGTATGTGTTATCAACTTGTCGTATGTGAATGTTACTCAAGAAAGAGCCAAGAAGAAACAATTGCTGGATACATTGAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ACBP

Protein Analysis

125

Amino Acids

14.17

Weight (kDa)

9.12

Isoelectric Point (pI)

56.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 37 - 114 4.1e-20 Acyl CoA binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 25, 43, 116
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 2 cut(s) 290, 367
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 2 cut(s) 72, 178
AluI AGCT 2 cut(s) 72, 178
Alw26I GTCTC 1 cut(s) 150
AoxI GGCC 2 cut(s) 138, 261
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 3 cut(s) 25, 43, 116
AspS9I GGNCC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 81
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 237
BciVI GTATCC 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 67
BfuI GTATCC 1 cut(s) 352
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 2 cut(s) 157, 262
BpuEI CTTGAG 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 2 cut(s) 172, 277
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 93, 246
BseXI GCAGC 1 cut(s) 81
BshFI GGCC 2 cut(s) 140, 263
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 2 cut(s) 140, 263
Bsp143I GATC 2 cut(s) 52, 63
BspANI GGCC 2 cut(s) 140, 263
BspCNI CTCAG 2 cut(s) 92, 247
BspLI GGNNCC 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 2 cut(s) 52, 63
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 79, 255
BstF5I GGATG 2 cut(s) 172, 277
BstKTI GATC 2 cut(s) 55, 66
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 52, 63
BstMWI GCNNNNNNNGC 2 cut(s) 137, 281
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 81
BsuI GTATCC 1 cut(s) 352
BsuRI GGCC 2 cut(s) 140, 263
BtsCI GGATG 2 cut(s) 172, 277
Cac8I GCNNGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 182
CviAII CATG 1 cut(s) 40
CviJI RGCY 8 cut(s) 72, 88, 140, 178, 216, 249, 263, 338
CviKI_1 RGCY 8 cut(s) 72, 88, 140, 178, 216, 249, 263, 338
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 79, 255
DpnI GATC 2 cut(s) 54, 65
DpnII GATC 2 cut(s) 52, 63
DraI TTTAAA 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 43
FaiI YATR 5 cut(s) 41, 129, 196, 295, 315
FatI CATG 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 2 cut(s) 179, 284
Fsp4HI GCNGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 70
HaeIII GGCC 2 cut(s) 140, 263
Hin1II CATG 1 cut(s) 43
HinfI GANTC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 57, 63
Hpy188III TCNNGA 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4V TGCA 4 cut(s) 19, 69, 131, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 281
HpyF3I CTNAG 2 cut(s) 79, 255
Hsp92II CATG 1 cut(s) 43
Kzo9I GATC 2 cut(s) 52, 63
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 4 cut(s) 164, 222, 249, 341
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 2 cut(s) 157, 262
MaeIII GTNAC 1 cut(s) 322
MalI GATC 2 cut(s) 54, 65
MboI GATC 2 cut(s) 52, 63
MboII GAAGA 3 cut(s) 62, 66, 355
MfeI CAATTG 1 cut(s) 350
MluCI AATT 5 cut(s) 25, 43, 96, 116, 350
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 4 cut(s) 88, 106, 163, 252
MseI TTAA 2 cut(s) 120, 222
MspR9I CCNGG 1 cut(s) 237
MunI CAATTG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 137, 281
NdeII GATC 2 cut(s) 52, 63
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 261
PstI CTGCAG 1 cut(s) 71
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 120, 222
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 2 cut(s) 52, 63
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 237
SetI ASST 5 cut(s) 11, 74, 180, 238, 374
SfaNI GCATC 2 cut(s) 157, 262
SfcI CTRYAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
Sse9I AATT 5 cut(s) 25, 43, 96, 116, 350
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 232
TasI AATT 5 cut(s) 25, 43, 96, 116, 350
Tru1I TTAA 2 cut(s) 120, 222
Tru9I TTAA 2 cut(s) 120, 222
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 208
XapI RAATTY 3 cut(s) 25, 43, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.