Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006804

Physical Location & Seq

Genomic Coordinates Forward (+)

2080562 .. 2083589

Gene Structure 3028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1017000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGTTTGAAGGAGGAGTTTGATGAACATGCTGAGAAAGCCAAGACCCTTCCAAAGTCAACAACCAATGAGAACAAGCTCAATCTCTATGGACTCTACAAGCAAGCCACTGTTGGAGCAGTGAGCACCAGCCGCCCGGGAATGTTCAATATGAAGGACAGAGTAATGTGGGATGCATGGAAGGCTGTTGAAGGGAGATCCAAGGAGGAAGCTATGGGCGACTACATCACGAAGGTGAAGCACCTGCTTGGAGAAGCCGGAGCTTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001666 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0010876 GO:0016020 GO:0017076 GO:0030554 GO:0031210 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0036293 GO:0043167 GO:0043168 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050826 GO:0050896 GO:0050997 GO:0051179 GO:0051234 GO:0070405 GO:0070482 GO:0071702 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ACBP

Protein Analysis

91

Amino Acids

10.02

Weight (kDa)

7.95

Isoelectric Point (pI)

23.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACBP	PF00887	4 - 79	3.1e-27	Acyl CoA binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31812
fragaria_vesca	FvH4_1g08340 FvH4_5g24090
malus_domestica	MD00G1002100.v1.1 MD02G1087600.v1.1 MD06G1017000.v1.1 MD15G1215200.v1.1
prunus_persica	Prupe.5G019500_v2.0.a1 Prupe.7G202100_v2.0.a1
pyrus_communis	pycom06g01370 pycom16g25520
rosa_chinensis	RchiOBHm_Chr7g0213621
rosa_laevigata	RLG00000016489
rosa_multiflora	Rmu_co8385225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245740
rosa_rugosa	Rorug02G0043800 Rorug07G0143300 Rorug07G0143400
rosa_samantha	Rh2AG091800 Rh2DG090600 Rh7AG276500 Rh7BG270700 Rh7CG295500 Rh7DG282700
rosa_wichuraiana	Rw0G023500 Rw7G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	192
AgsI	TTSAA	3 cut(s)	10, 148, 191
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	3 cut(s)	79, 212, 263
AluI	AGCT	3 cut(s)	79, 212, 263
Alw21I	GWGCWC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	136
AsuC2I	CCSGG	2 cut(s)	137, 138
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	128
BcnI	CCSGG	2 cut(s)	137, 138
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	2 cut(s)	137, 138
BmeT110I	CYCGRG	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	137, 138
BmsI	GCATC	1 cut(s)	163
BpuMI	CCSGG	2 cut(s)	137, 138
BsaJI	CCNNGG	2 cut(s)	136, 201
BseDI	CCNNGG	2 cut(s)	136, 201
BseGI	GGATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	137, 258
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	197
BspACI	CCGC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	136, 201
BssMI	GATC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 132, 182
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	135, 136
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	108, 126
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	105
Cfr9I	CCCGGG	1 cut(s)	136
CviAII	CATG	2 cut(s)	29, 177
CviJI	RGCY	8 cut(s)	41, 79, 107, 132, 185, 212, 257, 263
CviKI_1	RGCY	8 cut(s)	41, 79, 107, 132, 185, 212, 257, 263
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	32, 180
FaiI	YATR	5 cut(s)	30, 90, 152, 178, 215
FatI	CATG	2 cut(s)	28, 176
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	133
GluI	GCNGC	1 cut(s)	133
HapII	CCGG	2 cut(s)	137, 258
Hin1II	CATG	2 cut(s)	32, 180
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	2 cut(s)	137, 258
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	6 cut(s)	4, 59, 148, 175, 185, 226
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 132, 182
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	32, 180
Kzo9I	GATC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	116, 260
LpnPI	CCDG	3 cut(s)	142, 150, 257
LweI	GCATC	1 cut(s)	163
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	2 cut(s)	7, 199
Mph1103I	ATGCAT	1 cut(s)	178
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	2 cut(s)	137, 258
MspR9I	CCNGG	2 cut(s)	137, 138
MwoI	GCNNNNNNNGC	3 cut(s)	38, 132, 182
NciI	CCSGG	2 cut(s)	137, 138
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	32, 180
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	32
OliI	CACNNNNGTG	1 cut(s)	233
PaqCI	CACCTGC	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	233
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	137, 138
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	5 cut(s)	81, 214, 237, 246, 265
SfaNI	GCATC	1 cut(s)	163
SmaI	CCCGGG	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	233
SsiI	CCGC	1 cut(s)	133
StyD4I	CCNGG	2 cut(s)	135, 136
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	112
TauI	GCSGC	1 cut(s)	135
TscAI	CASTG	2 cut(s)	115, 126
TspDTI	ATGAA	2 cut(s)	39, 167
TspMI	CCCGGG	1 cut(s)	136
TspRI	CASTG	2 cut(s)	115, 126
XceI	RCATGY	1 cut(s)	32
XmaI	CCCGGG	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.