Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006804

Physical Location & Seq

Genomic Coordinates Forward (+)

30217332 .. 30219073

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG295500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGTTTGAAGGAGGAGTTTGAGGAGCATGCTGAGAAAGCCAAGACCCTTCCAGAGACGACAACCAATGAGAGCAAGCTCATCCTGTATGGGTTGTACAAGCAAGCCACTGTTGGAGATGTTAACACTGCCCGTCCCGGAATGTTCAATATGAGGGACAGAGCAAAGTGGGATGCATGGAAGGCTGTTGAAGGCAAATCCAAGGATGAAGCCATGGGCGATTATGTTACAAAAGTGAAGCAGTTGCTGGAAGAAGCAGGAGTTTCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001666 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0010876 GO:0016020 GO:0017076 GO:0030554 GO:0031210 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0036293 GO:0043167 GO:0043168 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050826 GO:0050896 GO:0050997 GO:0051179 GO:0051234 GO:0070405 GO:0070482 GO:0071702 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ACBP

Protein Analysis

90

Amino Acids

10.11

Weight (kDa)

5.43

Isoelectric Point (pI)

24.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACBP	PF00887	4 - 79	2.2e-29	Acyl CoA binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31812
fragaria_vesca	FvH4_1g08340 FvH4_5g24090
malus_domestica	MD00G1002100.v1.1 MD02G1087600.v1.1 MD06G1017000.v1.1 MD15G1215200.v1.1
prunus_persica	Prupe.5G019500_v2.0.a1 Prupe.7G202100_v2.0.a1
pyrus_communis	pycom06g01370 pycom16g25520
rosa_chinensis	RchiOBHm_Chr7g0213621
rosa_laevigata	RLG00000016489
rosa_multiflora	Rmu_co8385225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245740
rosa_rugosa	Rorug02G0043800 Rorug07G0143300 Rorug07G0143400
rosa_samantha	Rh2AG091800 Rh2DG090600 Rh7AG276500 Rh7BG270700 Rh7CG295500 Rh7DG282700
rosa_wichuraiana	Rw0G023500 Rw7G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	10, 148, 191
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	201, 213
BseDI	CCNNGG	2 cut(s)	201, 213
BseGI	GGATG	3 cut(s)	81, 178, 211
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	2 cut(s)	29, 38
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	2 cut(s)	120, 170
BsmAI	GTCTC	1 cut(s)	50
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	2 cut(s)	120, 170
Bsp1407I	TGTACA	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	201, 213
BssT1I	CCWWGG	2 cut(s)	201, 213
Bst4CI	ACNGT	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	30, 77, 105
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	3 cut(s)	81, 178, 211
BstMAI	GTCTC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 182
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	81, 178, 211
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	108, 126
Cac8I	GCNNGC	3 cut(s)	30, 77, 105
CaiI	CAGNNNCTG	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	3 cut(s)	29, 177, 214
CviJI	RGCY	5 cut(s)	41, 79, 107, 185, 212
CviKI_1	RGCY	5 cut(s)	41, 79, 107, 185, 212
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	201, 213
EcoT14I	CCWWGG	2 cut(s)	201, 213
EcoT22I	ATGCAT	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	201, 213
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	3 cut(s)	32, 180, 217
FaiI	YATR	6 cut(s)	30, 90, 152, 178, 215, 225
FaqI	GGGAC	2 cut(s)	120, 170
FatI	CATG	3 cut(s)	28, 176, 213
FokI	GGATG	3 cut(s)	68, 185, 218
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	3 cut(s)	32, 180, 217
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	4 cut(s)	4, 59, 175, 185
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 182
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	32, 180, 217
KspAI	GTTAAC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	5 cut(s)	66, 98, 151, 233, 243
LweI	GCATC	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	7, 16, 147
Mph1103I	ATGCAT	1 cut(s)	178
MseI	TTAA	1 cut(s)	123
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	38, 182
NciI	CCSGG	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	213
NlaIII	CATG	3 cut(s)	32, 180, 217
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	163
SphI	GCATGC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	2 cut(s)	201, 213
TaaI	ACNGT	1 cut(s)	112
TatI	WGTACW	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	115, 133
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	115, 133
XceI	RCATGY	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.