Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006804

Physical Location & Seq

Genomic Coordinates Forward (+)

7703978 .. 7705515

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG091800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGCTCAGGCTCTTCAGATCGACCTGGGTTCTTTAGCCCAACTGAGAGGGCCAGATGGGATGCTTGGAAAGCAGTTGAAGTACTGTTATCAACTTCTTGTATGTGAATGTTACTCAGGAAAGATCCAGGAAGAAGCGATTGTTGAATACATTGAAAAGGTGAAGCAGCTGCTAGCAGCTTCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ACBP

Protein Analysis

62

Amino Acids

6.86

Weight (kDa)

5.14

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31812
fragaria_vesca	FvH4_1g08340 FvH4_5g24090
malus_domestica	MD00G1002100.v1.1 MD02G1087600.v1.1 MD06G1017000.v1.1 MD15G1215200.v1.1
prunus_persica	Prupe.5G019500_v2.0.a1 Prupe.7G202100_v2.0.a1
pyrus_communis	pycom06g01370 pycom16g25520
rosa_chinensis	RchiOBHm_Chr7g0213621
rosa_laevigata	RLG00000016489
rosa_multiflora	Rmu_co8385225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245740
rosa_rugosa	Rorug02G0043800 Rorug07G0143300 Rorug07G0143400
rosa_samantha	Rh2AG091800 Rh2DG090600 Rh7AG276500 Rh7BG270700 Rh7CG295500 Rh7DG282700
rosa_wichuraiana	Rw0G023500 Rw7G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	118
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	79, 146, 155
AjnI	CCWGG	2 cut(s)	24, 126
AluBI	AGCT	2 cut(s)	169, 179
AluI	AGCT	2 cut(s)	169, 179
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	3 cut(s)	166, 169, 176
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	172
AsuNHI	GCTAGC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	156, 178
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	26, 128
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	3 cut(s)	167, 170, 177
BlsI	GCNGC	3 cut(s)	168, 171, 178
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	2 cut(s)	26, 128
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	2 cut(s)	26, 128
BmsI	GCATC	1 cut(s)	51
BmtI	GCTAGC	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	26, 128
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	20, 35, 129
BseXI	GCAGC	2 cut(s)	156, 178
BshFI	GGCC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	18, 123
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	3 cut(s)	19, 36, 128
BspOI	GCTAGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	118
BspQI	GCTCTTC	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	18, 123
Bst2UI	CCWGG	2 cut(s)	26, 128
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	6, 44, 115
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	2 cut(s)	21, 126
BstMBI	GATC	2 cut(s)	18, 123
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	2 cut(s)	26, 128
BstSCI	CCNGG	2 cut(s)	24, 126
BstV1I	GCAGC	2 cut(s)	156, 178
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	82
CviJI	RGCY	6 cut(s)	5, 11, 38, 52, 169, 179
CviKI_1	RGCY	6 cut(s)	5, 11, 38, 52, 169, 179
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	3 cut(s)	6, 44, 115
DpnI	GATC	2 cut(s)	20, 125
DpnII	GATC	2 cut(s)	18, 123
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	24, 126
FaiI	YATR	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	167, 170, 177
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	3 cut(s)	167, 170, 177
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	3 cut(s)	167, 170, 177
HaeIII	GGCC	1 cut(s)	52
HphI	GGTGA	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	117
HpyCH4III	ACNGT	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	3 cut(s)	6, 44, 115
Kzo9I	GATC	2 cut(s)	18, 123
LguI	GCTCTTC	1 cut(s)	18
LpnPI	CCDG	6 cut(s)	11, 38, 66, 102, 113, 140
Lsp1109I	GCAGC	2 cut(s)	156, 178
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	2 cut(s)	20, 125
MboI	GATC	2 cut(s)	18, 123
MboII	GAAGA	2 cut(s)	5, 143
MflI	RGATCY	1 cut(s)	123
MnlI	CCTC	1 cut(s)	41
MseI	TTAA	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	169
MspR9I	CCNGG	2 cut(s)	26, 128
MvaI	CCWGG	2 cut(s)	26, 128
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	2 cut(s)	18, 123
NheI	GCTAGC	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	18
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	168, 171, 178
Psp6I	CCWGG	2 cut(s)	24, 126
PspGI	CCWGG	2 cut(s)	24, 126
PspPI	GGNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	123
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	187
SatI	GCNGC	3 cut(s)	167, 170, 177
Sau3AI	GATC	2 cut(s)	18, 123
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	26, 128
SetI	ASST	4 cut(s)	27, 162, 171, 181
SfaNI	GCATC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	24, 126
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	21
TatI	WGTACW	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	187
Tru9I	TTAA	1 cut(s)	187
TseI	GCWGC	3 cut(s)	166, 169, 176
XspI	CTAG	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.