Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006804

Physical Location & Seq

Genomic Coordinates Forward (+)

443241 .. 446183

Gene Structure 2943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1002100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGTTTGAAGGAGGAGTTTGATGAACATGCTGAGAAAGCGAAGACCCTTCCTGAGTCAACAACCAATGAGAACAAGCTTATCCTCTATGGGCTGTACAAGCAAGCCACTGTTGGAGCTGTGAACACTAGCCGCCCAGGAATGTTCAATATGAGGGACAGAGCAAAGTGGGATGCATGGAAGGCTGTTGAAGGGAAATCCAAGGAGGAAGCCATGGGCGACTACATTACAAAGGTGAAACAGCTGCTGGAAGAAGCAGGAGCTTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001666 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0010876 GO:0016020 GO:0017076 GO:0030554 GO:0031210 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0036293 GO:0043167 GO:0043168 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050826 GO:0050896 GO:0050997 GO:0051179 GO:0051234 GO:0070405 GO:0070482 GO:0071702 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ACBP

Protein Analysis

91

Amino Acids

10.08

Weight (kDa)

5.85

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACBP	PF00887	4 - 79	3.1e-29	Acyl CoA binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31812
fragaria_vesca	FvH4_1g08340 FvH4_5g24090
malus_domestica	MD00G1002100.v1.1 MD02G1087600.v1.1 MD06G1017000.v1.1 MD15G1215200.v1.1
prunus_persica	Prupe.5G019500_v2.0.a1 Prupe.7G202100_v2.0.a1
pyrus_communis	pycom06g01370 pycom16g25520
rosa_chinensis	RchiOBHm_Chr7g0213621
rosa_laevigata	RLG00000016489
rosa_multiflora	Rmu_co8385225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245740
rosa_rugosa	Rorug02G0043800 Rorug07G0143300 Rorug07G0143400
rosa_samantha	Rh2AG091800 Rh2DG090600 Rh7AG276500 Rh7BG270700 Rh7CG295500 Rh7DG282700
rosa_wichuraiana	Rw0G023500 Rw7G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	133
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	10, 148, 191
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	4 cut(s)	79, 119, 244, 263
AluI	AGCT	4 cut(s)	79, 119, 244, 263
AlwNI	CAGNNNCTG	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	138
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	2 cut(s)	133, 245
BlsI	GCNGC	2 cut(s)	134, 246
Bme1390I	CCNGG	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	136, 201, 213
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	3 cut(s)	136, 201, 213
BseGI	GGATG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	24, 45
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
Bsp1407I	TGTACA	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	25, 46
BsrGI	TGTACA	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	136, 201, 213
BssT1I	CCWWGG	2 cut(s)	201, 213
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	33, 54
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 100, 182
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	3 cut(s)	29, 177, 214
CviJI	RGCY	9 cut(s)	79, 94, 107, 119, 132, 185, 212, 244, 263
CviKI_1	RGCY	9 cut(s)	79, 94, 107, 119, 132, 185, 212, 244, 263
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	33, 54
Eco130I	CCWWGG	2 cut(s)	201, 213
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	201, 213
EcoT22I	ATGCAT	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	201, 213
FaeI	CATG	3 cut(s)	32, 180, 217
FaiI	YATR	5 cut(s)	30, 90, 152, 178, 215
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	28, 176, 213
Fnu4HI	GCNGC	2 cut(s)	133, 245
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	133, 245
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	2 cut(s)	133, 245
Hin1II	CATG	3 cut(s)	32, 180, 217
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	56
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	60, 124
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	2 cut(s)	60, 124
HpyAV	CCTTC	4 cut(s)	4, 59, 175, 185
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 100, 182
HpyF3I	CTNAG	2 cut(s)	33, 54
Hsp92II	CATG	3 cut(s)	32, 180, 217
LmnI	GCTCC	2 cut(s)	116, 260
LpnPI	CCDG	5 cut(s)	66, 123, 150, 233, 243
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	129
MboII	GAAGA	2 cut(s)	55, 263
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	4 cut(s)	7, 95, 147, 199
Mph1103I	ATGCAT	1 cut(s)	178
MspA1I	CMGCKG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	3 cut(s)	38, 100, 182
NcoI	CCATGG	1 cut(s)	213
NlaIII	CATG	3 cut(s)	32, 180, 217
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	134, 246
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SatI	GCNGC	2 cut(s)	133, 245
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	5 cut(s)	81, 121, 237, 246, 265
SfaNI	GCATC	1 cut(s)	163
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	2 cut(s)	201, 213
TaaI	ACNGT	1 cut(s)	112
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	135
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	115
XceI	RCATGY	1 cut(s)	32
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.