MD15G1215200.v1.1

acyl-CoA-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0006804
Physical Location & Seq
Forward (+)
17332191 .. 17333336
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1215200.v1.1.491

Sequence Viewer

Length: 279 bp
ATGGCTCTGCAACTCGAGGAGGAATTCAAAGAATATGCAGAGAAGGCCAAGTCTTTACCCCCAAGAACAACCGATGCAGATAAACTGATCCTGTACGGCCTTTACAAGCAGGCAACAATTGGTTCGGTTAATACTAATCGACCTGGGTTTTTCAGCCCAACAGAGAGGGCCAAATGGGATGCATGGAAAGCTGTTGAAGGGAAGAACAAAGAAGAAGCAATGGCTGAATACATCGCAAAGGTGAAGCAGCTGCAACAACAAGAAGTAGCCTCCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ACBP

Protein Analysis

93

Amino Acids

10.45

Weight (kDa)

6.3

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 6 - 81 7.5e-28 Acyl CoA binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 23
AfaI GTAC 1 cut(s) 95
AgsI TTSAA 2 cut(s) 28, 197
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 191, 250
AluI AGCT 2 cut(s) 191, 250
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 3 cut(s) 45, 97, 168
ApeKI GCWGC 2 cut(s) 247, 250
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 14
BbvI GCAGC 2 cut(s) 237, 259
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 144
BisI GCNGC 2 cut(s) 248, 251
BlsI GCNGC 2 cut(s) 249, 252
Bme1390I CCNGG 1 cut(s) 144
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 64, 169
BsaJI CCNNGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 237, 259
BshFI GGCC 3 cut(s) 47, 99, 170
BsiHKCI CYCGRG 1 cut(s) 14
BsnI GGCC 3 cut(s) 47, 99, 170
BsoBI CYCGRG 1 cut(s) 14
Bsp143I GATC 1 cut(s) 87
BspANI GGCC 3 cut(s) 47, 99, 170
BspPI GGATC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 111
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 44, 188
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 237, 259
BsuRI GGCC 3 cut(s) 47, 99, 170
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 94
CviAII CATG 1 cut(s) 183
CviJI RGCY 9 cut(s) 5, 47, 99, 156, 170, 191, 224, 250, 269
CviKI_1 RGCY 9 cut(s) 5, 47, 99, 156, 170, 191, 224, 250, 269
CviQI GTAC 1 cut(s) 94
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 184
FaeI CATG 1 cut(s) 186
FaiI YATR 3 cut(s) 36, 184, 277
FatI CATG 1 cut(s) 182
Fnu4HI GCNGC 2 cut(s) 248, 251
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 248, 251
GluI GCNGC 2 cut(s) 248, 251
HaeIII GGCC 3 cut(s) 47, 99, 170
Hin1II CATG 1 cut(s) 186
HphI GGTGA 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 37, 191
HpyCH4V TGCA 5 cut(s) 10, 38, 77, 182, 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 188
Hsp92II CATG 1 cut(s) 186
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 4 cut(s) 95, 104, 129, 156
Lsp1109I GCAGC 2 cut(s) 237, 259
LweI GCATC 2 cut(s) 64, 169
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 2 cut(s) 214, 224
MfeI CAATTG 1 cut(s) 117
MluCI AATT 2 cut(s) 23, 117
MnlI CCTC 3 cut(s) 10, 13, 159
Mph1103I ATGCAT 1 cut(s) 184
MseI TTAA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 44, 188
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 184
PaeR7I CTCGAG 1 cut(s) 14
PkrI GCNGC 2 cut(s) 249, 252
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspPI GGNCC 1 cut(s) 168
PspXI VCTCGAGB 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 250
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 2 cut(s) 248, 251
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 144
SetI ASST 4 cut(s) 145, 193, 243, 252
SfaNI GCATC 2 cut(s) 64, 169
Sfr274I CTCGAG 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 23, 117
StyD4I CCNGG 1 cut(s) 142
TaqI TCGA 2 cut(s) 15, 139
TasI AATT 2 cut(s) 23, 117
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseI GCWGC 2 cut(s) 247, 250
XapI RAATTY 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.