Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006804

Physical Location & Seq

Genomic Coordinates Forward (+)

28921563 .. 28924032

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG276500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTTGCTGCACTAAAACTAATTCAGATCTGTATGCTACCTGTTTCCATTGAATCTCTCACTTATTTCTGCGCTGTTTTGCATTACTTTGACATTGATCACCAAGAATCACCATCAGGGGCCGATTCATCATTTTGGGAGGAGTTTGAGGAGCATGCTGAGAAAGCCAAGACCCTTCCAGAGACGACAACCAATGAGAGCAAGCTCATCCTGTATGGGTTGTACAAGCAAGCCACTGTTGGAGATGTTAACACTGCCCGTCCCGGAATGTTCAATATGAGGGACAGAGCAAAGTGGGATGCATGGAAGGCTGTTGAAGGCAAATCCAAGGATGAAGCCATGGGCGATTATGTTACAAAAGTGAAGCAGTTGCTGGAAGAAGCAGGAGTTTCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001666 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0010876 GO:0016020 GO:0017076 GO:0030554 GO:0031210 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0036293 GO:0043167 GO:0043168 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050826 GO:0050896 GO:0050997 GO:0051179 GO:0051234 GO:0070405 GO:0070482 GO:0071702 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ACBP

Protein Analysis

132

Amino Acids

14.86

Weight (kDa)

4.92

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACBP	PF00887	47 - 121	1.3e-28	Acyl CoA binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31812
fragaria_vesca	FvH4_1g08340 FvH4_5g24090
malus_domestica	MD00G1002100.v1.1 MD02G1087600.v1.1 MD06G1017000.v1.1 MD15G1215200.v1.1
prunus_persica	Prupe.5G019500_v2.0.a1 Prupe.7G202100_v2.0.a1
pyrus_communis	pycom06g01370 pycom16g25520
rosa_chinensis	RchiOBHm_Chr7g0213621
rosa_laevigata	RLG00000016489
rosa_multiflora	Rmu_co8385225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245740
rosa_rugosa	Rorug02G0043800 Rorug07G0143300 Rorug07G0143400
rosa_samantha	Rh2AG091800 Rh2DG090600 Rh7AG276500 Rh7BG270700 Rh7CG295500 Rh7DG282700
rosa_wichuraiana	Rw0G023500 Rw7G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	3 cut(s)	53, 274, 317
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	373
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	92, 102
BccI	CCATC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	327, 339
BseDI	CCNNGG	2 cut(s)	327, 339
BseGI	GGATG	3 cut(s)	207, 304, 337
BseMII	CTCAG	1 cut(s)	150
BseRI	GAGGAG	2 cut(s)	155, 164
BshFI	GGCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	2 cut(s)	246, 296
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	2 cut(s)	246, 296
BsnI	GGCC	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	27, 97
Bsp19I	CCATGG	1 cut(s)	339
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	327, 339
BssMI	GATC	2 cut(s)	27, 97
BssT1I	CCWWGG	2 cut(s)	327, 339
Bst4CI	ACNGT	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	222
BstC8I	GCNNGC	4 cut(s)	6, 156, 203, 231
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	207, 304, 337
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	30, 100
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	27, 97
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 308
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	3 cut(s)	207, 304, 337
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	234, 252
Cac8I	GCNNGC	4 cut(s)	6, 156, 203, 231
CaiI	CAGNNNCTG	1 cut(s)	373
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	155, 303, 340
CviJI	RGCY	6 cut(s)	122, 167, 205, 233, 311, 338
CviKI_1	RGCY	6 cut(s)	122, 167, 205, 233, 311, 338
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	29, 99
DpnII	GATC	2 cut(s)	27, 97
Eco130I	CCWWGG	2 cut(s)	327, 339
EcoT14I	CCWWGG	2 cut(s)	327, 339
EcoT22I	ATGCAT	1 cut(s)	304
ErhI	CCWWGG	2 cut(s)	327, 339
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	3 cut(s)	158, 306, 343
FaiI	YATR	7 cut(s)	35, 156, 216, 278, 304, 341, 351
FaqI	GGGAC	2 cut(s)	246, 296
FatI	CATG	3 cut(s)	154, 302, 339
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	3 cut(s)	194, 311, 344
Fsp4HI	GCNGC	1 cut(s)	9
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	158, 306, 343
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	3 cut(s)	53, 107, 125
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	92, 102
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	3 cut(s)	185, 301, 311
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	11, 82, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 308
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	158, 306, 343
HspAI	GCGC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	27, 97
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	7 cut(s)	54, 102, 192, 224, 277, 359, 369
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	2 cut(s)	29, 99
MboI	GATC	2 cut(s)	27, 97
MboII	GAAGA	1 cut(s)	389
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	3 cut(s)	133, 142, 273
Mph1103I	ATGCAT	1 cut(s)	304
MseI	TTAA	1 cut(s)	249
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	164, 308
NciI	CCSGG	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	2 cut(s)	27, 97
NlaIII	CATG	3 cut(s)	158, 306, 343
NlaIV	GGNNCC	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	304
NspI	RCATGY	1 cut(s)	158
PaeI	GCATGC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	53, 107, 125
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	27, 97
Sau96I	GGNCC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	2 cut(s)	43, 207
SfaNI	GCATC	1 cut(s)	289
SphI	GCATGC	1 cut(s)	158
Sse9I	AATT	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	2 cut(s)	327, 339
TaaI	ACNGT	1 cut(s)	238
TasI	AATT	1 cut(s)	21
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	53, 107, 125
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	2 cut(s)	241, 259
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	117, 348
TspRI	CASTG	2 cut(s)	241, 259
XceI	RCATGY	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.