Rh2DG090600

acyl-CoA-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006804
Physical Location & Seq
Forward (+)
6992002 .. 6993945
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG090600.1

Sequence Viewer

Length: 270 bp
ATGGCTCAGGCTCTTCAGGAGGAATTTAAAGAATATGCAGAGAAGGCCAAGTCTCTGCCCTCGACAACAAAGGATGCAGATAAACTAGTACTCTACGGCCTATACAAGCAAGCAACCATCGGCTCCGTTAATACTAATCGACCTGGGTTCTTTAGCACAACTGAGAGGGCCAAATGGGATGCTTGGAAAGCAGTTGAAGGAAAGATCCAAGAAGAAGCAATTGCTGAATACATTGAAAAGGTGAAGCAGCTGCTTGCAGCTTCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ACBP

Protein Analysis

89

Amino Acids

9.97

Weight (kDa)

6.28

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 6 - 81 1.5e-25 Acyl CoA binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 23
AfaI GTAC 1 cut(s) 90
AgsI TTSAA 2 cut(s) 197, 236
AhlI ACTAGT 1 cut(s) 85
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 250, 260
AluI AGCT 2 cut(s) 250, 260
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 199
AoxI GGCC 3 cut(s) 45, 97, 168
ApeKI GCWGC 3 cut(s) 247, 250, 257
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 253
BbvI GCAGC 2 cut(s) 237, 259
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 1 cut(s) 86
BisI GCNGC 3 cut(s) 248, 251, 258
BlsI GCNGC 3 cut(s) 249, 252, 259
BmcAI AGTACT 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 64, 169
Bpu10I CCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 79, 184
BseMII CTCAG 2 cut(s) 20, 153
BseXI GCAGC 2 cut(s) 237, 259
BshFI GGCC 3 cut(s) 47, 99, 170
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 3 cut(s) 47, 99, 170
Bsp143I GATC 1 cut(s) 204
BspANI GGCC 3 cut(s) 47, 99, 170
BspCNI CTCAG 2 cut(s) 19, 154
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 111, 255
BstDEI CTNAG 2 cut(s) 6, 162
BstF5I GGATG 2 cut(s) 79, 184
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 44, 188
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 237, 259
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BsuRI GGCC 3 cut(s) 47, 99, 170
BtsCI GGATG 2 cut(s) 79, 184
Cac8I GCNNGC 2 cut(s) 111, 255
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 89
CviJI RGCY 8 cut(s) 5, 11, 47, 99, 123, 170, 250, 260
CviKI_1 RGCY 8 cut(s) 5, 11, 47, 99, 123, 170, 250, 260
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 6, 162
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
DraI TTTAAA 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 142
FaiI YATR 3 cut(s) 36, 103, 268
Fnu4HI GCNGC 3 cut(s) 248, 251, 258
FokI GGATG 2 cut(s) 86, 191
Fsp4HI GCNGC 3 cut(s) 248, 251, 258
FspBI CTAG 1 cut(s) 86
GluI GCNGC 3 cut(s) 248, 251, 258
HaeIII GGCC 3 cut(s) 47, 99, 170
HphI GGTGA 1 cut(s) 253
Hpy188III TCNNGA 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 37, 191
HpyCH4V TGCA 3 cut(s) 38, 77, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 188
HpyF3I CTNAG 2 cut(s) 6, 162
Kzo9I GATC 1 cut(s) 204
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 3 cut(s) 2, 129, 156
Lsp1109I GCAGC 2 cut(s) 237, 259
LweI GCATC 2 cut(s) 64, 169
MaeI CTAG 1 cut(s) 86
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 2 cut(s) 5, 224
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 204
MluCI AATT 2 cut(s) 23, 219
MnlI CCTC 3 cut(s) 13, 70, 159
MseI TTAA 2 cut(s) 27, 129
MspA1I CMGCKG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 44, 188
NdeII GATC 1 cut(s) 204
NlaIV GGNNCC 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 249, 252, 259
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 168
PsuI RGATCY 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 250
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 27, 129
SatI GCNGC 3 cut(s) 248, 251, 258
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 144
SetI ASST 4 cut(s) 145, 243, 252, 262
SfaNI GCATC 2 cut(s) 64, 169
SpeI ACTAGT 1 cut(s) 85
Sse9I AATT 2 cut(s) 23, 219
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 142
TaqI TCGA 2 cut(s) 62, 139
TasI AATT 2 cut(s) 23, 219
TatI WGTACW 1 cut(s) 88
Tru1I TTAA 2 cut(s) 27, 129
Tru9I TTAA 2 cut(s) 27, 129
TseI GCWGC 3 cut(s) 247, 250, 257
TspGWI ACGGA 1 cut(s) 115
XapI RAATTY 1 cut(s) 23
XspI CTAG 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.