Rorug02G0043800

acyl-CoA-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006804
Physical Location & Seq
Forward (+)
3433956 .. 3436538
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0043800.1

Sequence Viewer

Length: 1593 bp
ATGGAGGAAAGCTCCGGCGCTCTCTCCGACGCCGCAATCGAAACCCTAAGAAGCCGAGGATGGTGCTTCGGCGGCGACTTGGAGCAAGTCCAAGCGATGATCCTGATCCACTCCGCCTTGGCCGACGACACCCGAACGGTGGTGAACTCAGTCGAATCGGAGCTCCTCAACATGGATCTCAAATCCGTCGGAGCCAAGTCGTTGCCCGACCCGGCCGCTCTTCGCAAGTCATCTCATCTTGTCGGTCCCAAAATAGCTTGGGTTAGAGACATTACGAGTAGTAATGTTGACGATTTTGCGAGGAATTCTAGTCGGCGGCTTTTGAAACTTGGTCTCAGTGATGGACATGGTGAGGTAGCAGCTATAGAGTACCTCCATATCCCTTCATTCTCCGACGACGTCGTTCCGGGCACTAAGGTCCGCCTGGAAAATAAAGCTATTATACGAAATGGGATGGTATGTTTGACTCCTAAAGTCTTGACCGTGTTAGGAGGTGTTGTTCAGTCCCTTTATGAAGAATGGCAGATGAATAAAAAATATTCAGGTTTTTCGCGTTCAACTTTAAGGCTTTCAAAGGAAAGCGATGGTAATGGCCCTCCTCCATTTGAGAAGTTGCAAGTTGGGGCACCCAAAACTCAGTTTCCTCGGCAGGACAAGTCTTATCAGTCTGATGTTAACACTAAGAGCAGCGATCCTACTATCAGATCTTCTGAGATAAGACCATCTGGAAAGCAACAGCAGAACCTTCTTTCAAAGTCAAATGGTATTGATAACCCTAATAAGAAAAATGACGTGGATGTCAATCTAAAGACGGATTCTGTTAATGAAAGAACTGAAGATAAACCTAGTAGCTCTGCAACAAGGCCAAAAGAAGTTGTTGAAGCTGTCCCTGTTCAAAACCAAGCAGCAGCACAGAAACTCCTCCAGAAAATGAGTCATCAAAACCAGGATAGTAGGCATTCAAGAGGTAGAAAATTTAGAGGCAAGGGTAGGGAGGAAGAGTCGGAGGTATTCACTTTGGAAGAATGGGAAAAGAGGAAAGCTGGGGCAAAGCCTTCCATAACCGCCACTTCTGCAGTTGTTCATCGTGATGAGGAACTTGCTTGGCAGCTTCAAAATCAGTTTGATTTAGAAGATTCTCATGCACAAATGGGTCCTCAAAATGTGGAGGCAGAGGATATTAAATTGAGCATGTTTAAGTATGAGAAGAATGACGACTGGGGTAGTGGAATGGGAAATGAGAGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGAAGGGGAAGAGGATGGGAAGATGACGACGGTGGTTATGGATCGGAACATGGAAGGAGCGGAACAGGGAGAGGATGGGGAAGAAGGGATGATGGTGGTGGTGGTGGTGGTTATGGAATGGAACATGGAAGGAGCGGAAGTGGGAGAGGATGGGGAAGAAGGGATGATGATGGTGGGGGTTATGGAATGGAACATGGAAGGAGCGGAAGTGGGAGAGGATGGGGAAGAAGGGATGATGATGGTGGGGGTTATGGAATGGAACACGGAAGGAGCGGAAGTGGGAGAGGAAGGGGAAGGGGGAGGGGGAGTAGAGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ACBP

Protein Analysis

530

Amino Acids

57.97

Weight (kDa)

9.12

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI1_N_C PF08585 93 - 176 4.5e-18 RMI1, N-terminal OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 797
AatII GACGTC 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 625
AccBSI CCGCTC 5 cut(s) 218, 1332, 1407, 1476, 1545
AccII CGCG 1 cut(s) 553
AclWI GGATC 5 cut(s) 94, 100, 183, 686, 1321
AcoI YGGCCR 2 cut(s) 120, 213
AcsI RAATTY 2 cut(s) 304, 974
AcuI CTGAAG 1 cut(s) 855
AcyI GRCGYC 2 cut(s) 30, 399
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 2 cut(s) 139, 172
AgsI TTSAA 8 cut(s) 325, 558, 573, 753, 881, 896, 963, 1115
AjiI CACGTC 1 cut(s) 793
AjnI CCWGG 2 cut(s) 423, 945
AloI GAACNNNNNNTCC 2 cut(s) 483, 515
AluBI AGCT 9 cut(s) 12, 163, 257, 362, 437, 852, 884, 1043, 1111
AluI AGCT 9 cut(s) 12, 163, 257, 362, 437, 852, 884, 1043, 1111
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 2 cut(s) 261, 338
AlwI GGATC 5 cut(s) 94, 100, 183, 686, 1321
AoxI GGCC 4 cut(s) 120, 213, 592, 863
ApeKI GCWGC 5 cut(s) 359, 687, 905, 908, 1108
ApoI RAATTY 2 cut(s) 304, 974
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 4 cut(s) 245, 418, 593, 1154
AsuC2I CCSGG 2 cut(s) 212, 408
AsuHPI GGTGA 2 cut(s) 154, 362
AvaII GGWCC 3 cut(s) 245, 418, 1154
BaeGI GKGCMC 2 cut(s) 413, 628
BanI GGYRCC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 5 cut(s) 371, 699, 917, 920, 1120
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 2 cut(s) 425, 947
BcnI CCSGG 2 cut(s) 212, 408
BcoDI GTCTC 2 cut(s) 261, 338
BfaI CTAG 2 cut(s) 309, 846
BfmI CTRYAG 2 cut(s) 363, 1074
BfoI RGCGCY 1 cut(s) 21
BglII AGATCT 1 cut(s) 704
BisI GCNGC 9 cut(s) 33, 73, 216, 317, 360, 688, 906, 909, 1109
BlsI GCNGC 9 cut(s) 34, 74, 217, 318, 361, 689, 907, 910, 1110
Bme1390I CCNGG 4 cut(s) 212, 408, 425, 947
Bme18I GGWCC 3 cut(s) 245, 418, 1154
BmgBI CACGTC 1 cut(s) 793
BmgT120I GGNCC 4 cut(s) 245, 418, 593, 1154
BmiI GGNNCC 4 cut(s) 193, 247, 627, 1155
BmrFI CCNGG 4 cut(s) 212, 408, 425, 947
BmrI ACTGGG 1 cut(s) 1228
BmuI ACTGGG 1 cut(s) 1228
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 908
BpuMI CCSGG 2 cut(s) 212, 408
BsaBI GATNNNNATC 2 cut(s) 104, 801
BsaHI GRCGYC 2 cut(s) 30, 399
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 3 cut(s) 55, 117, 644
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 172
Bse1I ACTGG 1 cut(s) 1223
Bse8I GATNNNNATC 2 cut(s) 104, 801
BseBI CCWGG 2 cut(s) 425, 947
BseDI CCNNGG 3 cut(s) 55, 117, 644
BseJI GATNNNNATC 2 cut(s) 104, 801
BseLI CCNNNNNNNGG 2 cut(s) 139, 172
BseMII CTCAG 4 cut(s) 162, 349, 650, 702
BseNI ACTGG 1 cut(s) 1223
BseRI GAGGAG 4 cut(s) 155, 588, 911, 1258
BseSI GKGCMC 2 cut(s) 413, 628
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 5 cut(s) 371, 699, 917, 920, 1120
BseYI CCCAGC 1 cut(s) 1043
Bsh1236I CGCG 1 cut(s) 553
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 4 cut(s) 122, 215, 594, 865
BshNI GGYRCC 1 cut(s) 625
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 3 cut(s) 15, 212, 407
BslFI GGGAC 3 cut(s) 231, 490, 872
BslI CCNNNNNNNGG 2 cut(s) 139, 172
BsmAI GTCTC 2 cut(s) 261, 338
BsmFI GGGAC 3 cut(s) 231, 490, 872
BsmI GAATGC 1 cut(s) 958
BsnI GGCC 4 cut(s) 122, 215, 594, 865
Bso31I GGTCTC 1 cut(s) 338
Bsp1286I GDGCHC 3 cut(s) 165, 413, 628
Bsp143I GATC 6 cut(s) 99, 105, 175, 691, 704, 1313
BspANI GGCC 4 cut(s) 122, 215, 594, 865
BspCNI CTCAG 4 cut(s) 161, 348, 649, 703
BspFNI CGCG 1 cut(s) 553
BspLI GGNNCC 4 cut(s) 193, 247, 627, 1155
BspMAI CTGCAG 1 cut(s) 1078
BspPI GGATC 5 cut(s) 94, 100, 183, 686, 1321
BspQI GCTCTTC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 625
BspTNI GGTCTC 1 cut(s) 338
BsrBI CCGCTC 5 cut(s) 218, 1332, 1407, 1476, 1545
BsrI ACTGG 1 cut(s) 1223
BssECI CCNNGG 3 cut(s) 55, 117, 644
BssMI GATC 6 cut(s) 99, 105, 175, 691, 704, 1313
BssNI GRCGYC 2 cut(s) 30, 399
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 2 cut(s) 425, 947
Bst4CI ACNGT 3 cut(s) 139, 484, 1304
Bst6I CTCTTC 3 cut(s) 225, 993, 1276
BstACI GRCGYC 2 cut(s) 30, 399
BstDEI CTNAG 7 cut(s) 47, 148, 335, 414, 636, 681, 711
BstFNI CGCG 1 cut(s) 553
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 6 cut(s) 102, 108, 178, 694, 707, 1316
BstMAI GTCTC 2 cut(s) 261, 338
BstMBI GATC 6 cut(s) 99, 105, 175, 691, 704, 1313
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 2 cut(s) 72, 1073
BstNI CCWGG 2 cut(s) 425, 947
BstNSI RCATGY 1 cut(s) 1195
BstSCI CCNGG 4 cut(s) 210, 406, 423, 945
BstSFI CTRYAG 2 cut(s) 363, 1074
BstSLI GKGCMC 2 cut(s) 413, 628
BstUI CGCG 1 cut(s) 553
BstV1I GCAGC 5 cut(s) 371, 699, 917, 920, 1120
BstX2I RGATCY 2 cut(s) 175, 704
BstYI RGATCY 2 cut(s) 175, 704
BstZI CGGCCG 1 cut(s) 213
BsuRI GGCC 4 cut(s) 122, 215, 594, 865
BtgZI GCGATG 2 cut(s) 110, 597
BtrI CACGTC 1 cut(s) 793
BtsIMutI CAGTG 1 cut(s) 343
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 4 cut(s) 245, 418, 593, 1154
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 370
CviAII CATG 7 cut(s) 172, 347, 1142, 1192, 1322, 1397, 1466
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 7 cut(s) 47, 148, 335, 414, 636, 681, 711
DpnI GATC 6 cut(s) 101, 107, 177, 693, 706, 1315
DpnII GATC 6 cut(s) 99, 105, 175, 691, 704, 1313
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 2 cut(s) 120, 213
EagI CGGCCG 1 cut(s) 213
Eam1104I CTCTTC 3 cut(s) 225, 993, 1276
EarI CTCTTC 3 cut(s) 225, 993, 1276
EciI GGCGGA 2 cut(s) 103, 410
Ecl136II GAGCTC 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 338
Eco47I GGWCC 3 cut(s) 245, 418, 1154
Eco52I CGGCCG 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 855
EcoICRI GAGCTC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 1154
EcoRI GAATTC 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 423, 945
EcoT14I CCWWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 7 cut(s) 175, 350, 1145, 1195, 1325, 1400, 1469
FaqI GGGAC 3 cut(s) 231, 490, 872
FatI CATG 7 cut(s) 171, 346, 1141, 1191, 1321, 1396, 1465
Fnu4HI GCNGC 9 cut(s) 33, 73, 216, 317, 360, 688, 906, 909, 1109
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 9 cut(s) 33, 73, 216, 317, 360, 688, 906, 909, 1109
FspBI CTAG 2 cut(s) 309, 846
GlaI GCGC 1 cut(s) 19
GluI GCNGC 9 cut(s) 33, 73, 216, 317, 360, 688, 906, 909, 1109
GsaI CCCAGC 1 cut(s) 1047
GsuI CTGGAG 1 cut(s) 908
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 4 cut(s) 122, 215, 594, 865
HapII CCGG 3 cut(s) 15, 212, 407
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 2 cut(s) 30, 399
Hin1II CATG 7 cut(s) 175, 350, 1145, 1195, 1325, 1400, 1469
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 2 cut(s) 289, 676
HindII GTYRAC 2 cut(s) 289, 676
HinfI GANTC 6 cut(s) 155, 466, 815, 934, 1001, 1136
HpaI GTTAAC 1 cut(s) 676
HpaII CCGG 3 cut(s) 15, 212, 407
HphI GGTGA 2 cut(s) 154, 362
Hpy166II GTNNAC 3 cut(s) 145, 289, 676
Hpy188I TCNGA 9 cut(s) 28, 160, 191, 394, 670, 704, 712, 1006, 1318
Hpy188III TCNNGA 6 cut(s) 103, 478, 726, 925, 963, 1088
Hpy8I GTNNAC 3 cut(s) 145, 289, 676
Hpy99I CGWCG 7 cut(s) 32, 128, 191, 398, 401, 404, 1304
HpyCH4III ACNGT 3 cut(s) 139, 484, 1304
HpyCH4IV ACGT 2 cut(s) 399, 792
HpyCH4V TGCA 4 cut(s) 616, 857, 1076, 1145
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 1073
HpyF3I CTNAG 7 cut(s) 47, 148, 335, 414, 636, 681, 711
HpySE526I ACGT 2 cut(s) 399, 792
Hsp92I GRCGYC 2 cut(s) 30, 399
Hsp92II CATG 7 cut(s) 175, 350, 1145, 1195, 1325, 1400, 1469
HspAI GCGC 1 cut(s) 18
KspAI GTTAAC 1 cut(s) 676
Kzo9I GATC 6 cut(s) 99, 105, 175, 691, 704, 1313
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 9 cut(s) 17, 82, 160, 168, 191, 1329, 1404, 1473, 1542
Lsp1109I GCAGC 5 cut(s) 371, 699, 917, 920, 1120
MaeI CTAG 2 cut(s) 309, 846
MaeII ACGT 2 cut(s) 399, 792
MalI GATC 6 cut(s) 101, 107, 177, 693, 706, 1315
MbiI CCGCTC 5 cut(s) 218, 1332, 1407, 1476, 1545
MboI GATC 6 cut(s) 99, 105, 175, 691, 704, 1313
MflI RGATCY 2 cut(s) 175, 704
MhlI GDGCHC 3 cut(s) 165, 413, 628
MluCI AATT 3 cut(s) 304, 974, 1184
MlyI GAGTC 3 cut(s) 460, 943, 1010
MmeI TCCRAC 4 cut(s) 51, 169, 417, 984
MseI TTAA 5 cut(s) 563, 675, 822, 1182, 1197
MslI CAYNNNNRTG 1 cut(s) 1089
MspI CCGG 3 cut(s) 15, 212, 407
MspR9I CCNGG 4 cut(s) 212, 408, 425, 947
Mva1269I GAATGC 1 cut(s) 958
MvaI CCWGG 2 cut(s) 425, 947
MvnI CGCG 1 cut(s) 553
MwoI GCNNNNNNNGC 2 cut(s) 72, 1073
NciI CCSGG 2 cut(s) 212, 408
NdeII GATC 6 cut(s) 99, 105, 175, 691, 704, 1313
NlaIII CATG 7 cut(s) 175, 350, 1145, 1195, 1325, 1400, 1469
NlaIV GGNNCC 4 cut(s) 193, 247, 627, 1155
NmeAIII GCCGAG 2 cut(s) 80, 625
NspI RCATGY 1 cut(s) 1195
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 958
PfeI GAWTC 3 cut(s) 155, 815, 1136
PflFI GACNNNGTC 1 cut(s) 398
PkrI GCNGC 9 cut(s) 34, 74, 217, 318, 361, 689, 907, 910, 1110
PleI GAGTC 3 cut(s) 460, 942, 1009
PpsI GAGTC 3 cut(s) 460, 942, 1009
PpuMI RGGWCCY 1 cut(s) 1154
Psp124BI GAGCTC 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 1154
Psp6I CCWGG 2 cut(s) 423, 945
PspFI CCCAGC 1 cut(s) 1043
PspGI CCWGG 2 cut(s) 423, 945
PspN4I GGNNCC 4 cut(s) 193, 247, 627, 1155
PspPI GGNCC 4 cut(s) 245, 418, 593, 1154
PspPPI RGGWCCY 1 cut(s) 1154
PstI CTGCAG 1 cut(s) 1078
PsuI RGATCY 2 cut(s) 175, 704
PsyI GACNNNGTC 1 cut(s) 398
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 1089
SacI GAGCTC 1 cut(s) 165
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 5 cut(s) 563, 675, 822, 1182, 1197
SatI GCNGC 9 cut(s) 33, 73, 216, 317, 360, 688, 906, 909, 1109
Sau3AI GATC 6 cut(s) 99, 105, 175, 691, 704, 1313
Sau96I GGNCC 4 cut(s) 245, 418, 593, 1154
SchI GAGTC 3 cut(s) 460, 943, 1010
ScrFI CCNGG 4 cut(s) 212, 408, 425, 947
SduI GDGCHC 3 cut(s) 165, 413, 628
SfcI CTRYAG 2 cut(s) 363, 1074
SinI GGWCC 3 cut(s) 245, 418, 1154
SmiMI CAYNNNNRTG 1 cut(s) 1089
Sse9I AATT 3 cut(s) 304, 974, 1184
SspI AATATT 1 cut(s) 539
SspMI CTAG 2 cut(s) 309, 846
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 4 cut(s) 210, 406, 423, 945
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 3 cut(s) 139, 484, 1304
TaiI ACGT 2 cut(s) 402, 795
TaqI TCGA 2 cut(s) 39, 153
TaqII GACCGA 1 cut(s) 233
TasI AATT 3 cut(s) 304, 974, 1184
TauI GCSGC 4 cut(s) 35, 75, 218, 319
TfiI GAWTC 3 cut(s) 155, 815, 1136
Tru1I TTAA 5 cut(s) 563, 675, 822, 1182, 1197
Tru9I TTAA 5 cut(s) 563, 675, 822, 1182, 1197
TscAI CASTG 1 cut(s) 343
TseI GCWGC 5 cut(s) 359, 687, 905, 908, 1108
TspDTI ATGAA 5 cut(s) 375, 528, 542, 840, 1073
TspGWI ACGGA 3 cut(s) 175, 827, 1551
TspRI CASTG 1 cut(s) 343
Tth111I GACNNNGTC 1 cut(s) 398
VpaK11BI GGWCC 3 cut(s) 245, 418, 1154
XapI RAATTY 2 cut(s) 304, 974
XceI RCATGY 1 cut(s) 1195
XspI CTAG 2 cut(s) 309, 846
ZraI GACGTC 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.