Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8385225.1

Orthogroup ID

OG0006804

Physical Location & Seq

Genomic Coordinates Reverse (-)

406 .. 1016

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8385225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atggaggagtttgaggagcatgctgagaaagccaagacccttccagagacgacaaccaatgagagcaagcttatcctgtatgggttgtacaagcaagccactgttggagatgttaacaccgcccgtcccggaatgttcaatttgagggacagagcaaagtgggatgcatggaaggctgttgaaggcaaatccaaggatgaagccatgggcgattatgttacaaaggtgaagcagttgctggaagaagcaggagtttccacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001666 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006869 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0010876 GO:0016020 GO:0017076 GO:0030554 GO:0031210 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0036293 GO:0043167 GO:0043168 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050826 GO:0050896 GO:0050997 GO:0051179 GO:0051234 GO:0070405 GO:0070482 GO:0071702 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ACBP

Protein Analysis

87

Amino Acids

9.8

Weight (kDa)

5.17

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31812
fragaria_vesca	FvH4_1g08340 FvH4_5g24090
malus_domestica	MD00G1002100.v1.1 MD02G1087600.v1.1 MD06G1017000.v1.1 MD15G1215200.v1.1
prunus_persica	Prupe.5G019500_v2.0.a1 Prupe.7G202100_v2.0.a1
pyrus_communis	pycom06g01370 pycom16g25520
rosa_chinensis	RchiOBHm_Chr7g0213621
rosa_laevigata	RLG00000016489
rosa_multiflora	Rmu_co8385225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245740
rosa_rugosa	Rorug02G0043800 Rorug07G0143300 Rorug07G0143400
rosa_samantha	Rh2AG091800 Rh2DG090600 Rh7AG276500 Rh7BG270700 Rh7CG295500 Rh7DG282700
rosa_wichuraiana	Rw0G023500 Rw7G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	139, 182
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	154
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	192, 204
BseDI	CCNNGG	2 cut(s)	192, 204
BseGI	GGATG	2 cut(s)	169, 202
BseMII	CTCAG	1 cut(s)	15
BseRI	GAGGAG	2 cut(s)	20, 29
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	111, 161
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsmFI	GGGAC	2 cut(s)	111, 161
Bsp1407I	TGTACA	1 cut(s)	87
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	192, 204
BssT1I	CCWWGG	2 cut(s)	192, 204
Bst4CI	ACNGT	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	21, 68, 96
BstDEI	CTNAG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	169, 202
BstMAI	GTCTC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 173
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	169, 202
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	21, 68, 96
CaiI	CAGNNNCTG	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	20, 168, 205
CviJI	RGCY	5 cut(s)	32, 70, 98, 176, 203
CviKI_1	RGCY	5 cut(s)	32, 70, 98, 176, 203
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	192, 204
EcoT14I	CCWWGG	2 cut(s)	192, 204
EcoT22I	ATGCAT	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	192, 204
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	3 cut(s)	23, 171, 208
FaiI	YATR	5 cut(s)	21, 81, 169, 206, 216
FaqI	GGGAC	2 cut(s)	111, 161
FatI	CATG	3 cut(s)	19, 167, 204
FokI	GGATG	2 cut(s)	176, 209
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	3 cut(s)	23, 171, 208
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	68
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	50, 166, 176
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 173
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	23, 171, 208
KspAI	GTTAAC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	5 cut(s)	57, 89, 142, 224, 234
LweI	GCATC	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	254
MluCI	AATT	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	2 cut(s)	7, 138
Mph1103I	ATGCAT	1 cut(s)	169
MseI	TTAA	1 cut(s)	114
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	29, 173
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	204
NlaIII	CATG	3 cut(s)	23, 171, 208
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	2 cut(s)	72, 228
SfaNI	GCATC	1 cut(s)	154
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	2 cut(s)	192, 204
TaaI	ACNGT	1 cut(s)	103
TasI	AATT	1 cut(s)	139
TatI	WGTACW	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	106
XceI	RCATGY	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.