AT1G34460

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005966
Physical Location & Seq
Forward (+)
12595110 .. 12602379
7270 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G34460.4

Sequence Viewer

Length: 1476 bp
ATGGCCCATTACATTAACATCTATGGCAAAAGACTGTTTGATATTGGACTCTATCTAAAGACAAGTGTTGACCTAATATTACAACAGCAACACGTTCTGATGAGTCAACAGAAGTTTACCGACATCAGCCTCTGCCATCGAGAAGCACCGAATCCGAAGCTGGATTTGCCGGACGATAACCGGCTATCTCCACTAACAGAACTGGAAGATATCGGGCAACAGTCCAAAACACTTGGGACAGCGATTCACCGGAAAATTTCCGAACAGAAGCGTGTGATTGAATCTGGGTCTGTTGCTTCGATCGTTGAACACAAACGCACAAATCTCTCAGCGATCATGGCGACGAGGGCAAACATACCTGAACAAGTCAGAGGTGCTCCTCTCGTTGATGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAATCGGCGTGCCCTCGGTGACATCGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAGGCTCAACCTCCGATTAATCGACCCATTACTCTTAGTTTTCGTGCCCAGTTATTAGCGAATGCCCAACTCGAAAGAAAGCCAATCAATGGAGACAACAAGGTTCCAGCTCTTGGTCCAAAGAGTCAGCCTCTTGCTGCAAGAAACCCAGAAGCTCAAAGGGCGGTTCAGAAGAAGAATCTAGTGGTTAAGCAACAGACGAAGCCTGTTGAAGTGATCGAGACGAAGAGGAATGCTCAAAGCAAAGCTGCTTGTGGTATAGTCAACAAACCAAAGATTCTTGATATTGATGAATCTGACAAAGATAATCATGTGGCTGCAGTGGAGTATGTTGATGATATGTACTCGTTCTATAAAGAAGTTGAGAAGGAGAGTCAGCCTAAGATGTACATGCACATTCAAACTGAGATGAATGAGAAGATGAGAGCGATCTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCTTAACCTTGAAACTCTGTACCTCACTGTTAACATCATTGATCGATTCCTCTATGTGAAAGCTGTTCCCAAGAGAGAGTTGCAGGTTAACGATCTGGTGTATGTCACGGACAATGCTTACAGTAGCAGACAGATTCTAGTGATGAAGAAGGCAATTCTTGGAAACCTCGAATGGTATTTGACAATCCCGACTCAATACGTCTTCCTTTTCTGCTTCATCAAAGCTTCGATATCTGATCCAGAAGTACTTCACGTTCAAAAGAAAAATCTTCAAGCTTCAAAGACCAAAAGTTTCAGCATACAAGTGTTGAGCTTTTCTTCACACAAGTCTATAGTCAAATCAGACCAATTCTGCAAAAAGTTTAACCTCTGTCAAGAAGTGACGGCCCTTGCTTCAGAATTCCATCTAGGAAACTGCGAGGCTTGGCGCGAGACTGTCACCAAACTCAAGGATCCTGAGACAAAGTGCTTGAAGGTGGTGTTTGAGTACACGGCCTCTGATGCTTGCGGATATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

491

Amino Acids

55.43

Weight (kDa)

9.14

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 272 - 344 4.1e-21 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1030
AccB7I CCANNNNNTGG 2 cut(s) 575, 599
AccII CGCG 1 cut(s) 1386
AciI CCGC 2 cut(s) 650, 1464
AclWI GGATC 3 cut(s) 1187, 1403, 1416
AcsI RAATTY 2 cut(s) 255, 1355
AcuI CTGAAG 1 cut(s) 1335
AfaI GTAC 5 cut(s) 830, 875, 977, 1203, 1445
AfiI CCNNNNNNNGG 2 cut(s) 575, 599
AflIII ACRYGT 1 cut(s) 91
AluBI AGCT 9 cut(s) 160, 596, 641, 734, 958, 1019, 1181, 1232, 1269
AluI AGCT 9 cut(s) 160, 596, 641, 734, 958, 1019, 1181, 1232, 1269
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 4 cut(s) 573, 701, 1382, 1409
AlwI GGATC 3 cut(s) 1187, 1403, 1416
AlwNI CAGNNNCTG 1 cut(s) 132
AoxI GGCC 3 cut(s) 3, 1341, 1449
ApeKI GCWGC 3 cut(s) 623, 734, 803
ApoI RAATTY 2 cut(s) 255, 1355
AseI ATTAAT 1 cut(s) 504
Asp700I GAANNNNTTC 1 cut(s) 1203
AspLEI GCGC 1 cut(s) 1386
AspS9I GGNCC 3 cut(s) 4, 602, 1342
AsuC2I CCSGG 1 cut(s) 471
AsuHPI GGTGA 3 cut(s) 239, 455, 1387
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 2 cut(s) 439, 535
BamHI GGATCC 1 cut(s) 1408
BbsI GAAGAC 1 cut(s) 1150
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 3 cut(s) 610, 721, 790
BccI CCATC 3 cut(s) 144, 383, 1368
BceAI ACGGC 2 cut(s) 1356, 1464
BcnI CCSGG 1 cut(s) 471
BcoDI GTCTC 4 cut(s) 573, 701, 1382, 1409
BfaI CTAG 4 cut(s) 668, 935, 1094, 1364
BfmI CTRYAG 2 cut(s) 804, 1287
BfuAI ACCTGC 1 cut(s) 1030
BisI GCNGC 3 cut(s) 624, 735, 804
BlsI GCNGC 3 cut(s) 625, 736, 805
BmcAI AGTACT 1 cut(s) 1203
Bme1390I CCNGG 1 cut(s) 471
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 3 cut(s) 4, 602, 1342
BmiI GGNNCC 2 cut(s) 591, 1410
BmrFI CCNGG 1 cut(s) 471
BmrI ACTGGG 1 cut(s) 529
BmsI GCATC 1 cut(s) 1447
BmuI ACTGGG 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 1150
BplI GAGNNNNNCTC 4 cut(s) 601, 633, 706, 738
BpuEI CTTGAG 1 cut(s) 1388
BpuMI CCSGG 1 cut(s) 471
Bsa29I ATCGAT 1 cut(s) 1000
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 249
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 599
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 2 cut(s) 207, 535
BseCI ATCGAT 1 cut(s) 1000
BseDI CCNNGG 1 cut(s) 439
BseLI CCNNNNNNNGG 2 cut(s) 575, 599
BseMII CTCAG 3 cut(s) 342, 882, 1404
BseNI ACTGG 2 cut(s) 207, 535
BseRI GAGGAG 1 cut(s) 369
BseSI GKGCMC 2 cut(s) 439, 535
BseXI GCAGC 3 cut(s) 610, 721, 790
Bsh1236I CGCG 1 cut(s) 1386
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 3 cut(s) 5, 1343, 1451
BshVI ATCGAT 1 cut(s) 1000
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 4 cut(s) 170, 181, 250, 471
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 2 cut(s) 575, 599
BsmAI GTCTC 4 cut(s) 573, 701, 1382, 1409
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 2 cut(s) 553, 724
BsnI GGCC 3 cut(s) 5, 1343, 1451
Bsp1286I GDGCHC 3 cut(s) 379, 439, 535
Bsp1407I TGTACA 1 cut(s) 873
Bsp143I GATC 8 cut(s) 300, 333, 702, 915, 997, 1048, 1192, 1408
BspACI CCGC 2 cut(s) 650, 1464
BspANI GGCC 3 cut(s) 5, 1343, 1451
BspCNI CTCAG 3 cut(s) 341, 883, 1405
BspDI ATCGAT 1 cut(s) 1000
BspFNI CGCG 1 cut(s) 1386
BspLI GGNNCC 2 cut(s) 591, 1410
BspMAI CTGCAG 1 cut(s) 808
BspMI ACCTGC 1 cut(s) 1030
BspPI GGATC 3 cut(s) 1187, 1403, 1416
BsrFI RCCGGY 1 cut(s) 180
BsrGI TGTACA 1 cut(s) 873
BsrI ACTGG 2 cut(s) 207, 535
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 8 cut(s) 300, 333, 702, 915, 997, 1048, 1192, 1408
Bst4CI ACNGT 6 cut(s) 36, 222, 416, 985, 1079, 1393
Bst6I CTCTTC 1 cut(s) 707
BstAUI TGTACA 1 cut(s) 873
BstC8I GCNNGC 2 cut(s) 435, 1462
BstDEI CTNAG 5 cut(s) 328, 521, 867, 891, 1413
BstFNI CGCG 1 cut(s) 1386
BstHHI GCGC 1 cut(s) 1386
BstKTI GATC 8 cut(s) 303, 336, 705, 918, 1000, 1051, 1195, 1411
BstMAI GTCTC 4 cut(s) 573, 701, 1382, 1409
BstMBI GATC 8 cut(s) 300, 333, 702, 915, 997, 1048, 1192, 1408
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 5 cut(s) 166, 338, 347, 647, 1457
BstNSI RCATGY 1 cut(s) 880
BstSCI CCNGG 1 cut(s) 469
BstSFI CTRYAG 2 cut(s) 804, 1287
BstSLI GKGCMC 2 cut(s) 439, 535
BstUI CGCG 1 cut(s) 1386
BstV1I GCAGC 3 cut(s) 610, 721, 790
BstV2I GAAGAC 1 cut(s) 1150
BstX2I RGATCY 1 cut(s) 1408
BstYI RGATCY 1 cut(s) 1408
Bsu15I ATCGAT 1 cut(s) 1000
BsuRI GGCC 3 cut(s) 5, 1343, 1451
BsuTUI ATCGAT 1 cut(s) 1000
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 2 cut(s) 813, 981
BveI ACCTGC 1 cut(s) 1030
Cac8I GCNNGC 2 cut(s) 435, 1462
CaiI CAGNNNCTG 1 cut(s) 132
CfoI GCGC 1 cut(s) 1386
Cfr10I RCCGGY 1 cut(s) 180
Cfr13I GGNCC 3 cut(s) 4, 602, 1342
ClaI ATCGAT 1 cut(s) 1000
Csp6I GTAC 5 cut(s) 829, 874, 976, 1202, 1444
CviAII CATG 3 cut(s) 337, 797, 877
CviQI GTAC 5 cut(s) 829, 874, 976, 1202, 1444
DdeI CTNAG 5 cut(s) 328, 521, 867, 891, 1413
DpnI GATC 8 cut(s) 302, 335, 704, 917, 999, 1050, 1194, 1410
DpnII GATC 8 cut(s) 300, 333, 702, 915, 997, 1048, 1192, 1408
Eam1104I CTCTTC 1 cut(s) 707
EarI CTCTTC 1 cut(s) 707
Eco32I GATATC 2 cut(s) 211, 1188
Eco47I GGWCC 1 cut(s) 602
Eco57I CTGAAG 1 cut(s) 1335
EcoRI GAATTC 1 cut(s) 1355
EcoRV GATATC 2 cut(s) 211, 1188
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 3 cut(s) 340, 800, 880
FaqI GGGAC 1 cut(s) 250
FatI CATG 3 cut(s) 336, 796, 876
Fnu4HI GCNGC 3 cut(s) 624, 735, 804
Fsp4HI GCNGC 3 cut(s) 624, 735, 804
FspBI CTAG 4 cut(s) 668, 935, 1094, 1364
GlaI GCGC 1 cut(s) 1385
GluI GCNGC 3 cut(s) 624, 735, 804
HaeIII GGCC 3 cut(s) 5, 1343, 1451
HapII CCGG 4 cut(s) 170, 181, 250, 471
HhaI GCGC 1 cut(s) 1386
Hin1II CATG 3 cut(s) 340, 800, 880
Hin6I GCGC 1 cut(s) 1384
HinP1I GCGC 1 cut(s) 1384
HincII GTYRAC 5 cut(s) 70, 107, 751, 988, 1045
HindII GTYRAC 5 cut(s) 70, 107, 751, 988, 1045
HindIII AAGCTT 2 cut(s) 1179, 1230
HpaI GTTAAC 2 cut(s) 988, 1045
HpaII CCGG 4 cut(s) 170, 181, 250, 471
HphI GGTGA 3 cut(s) 239, 455, 1387
Hpy166II GTNNAC 8 cut(s) 70, 107, 117, 751, 943, 988, 1045, 1446
Hpy188III TCNNGA 8 cut(s) 140, 706, 767, 919, 1144, 1196, 1331, 1412
Hpy8I GTNNAC 8 cut(s) 70, 107, 117, 751, 943, 988, 1045, 1446
Hpy99I CGWCG 1 cut(s) 346
HpyAV CCTTC 3 cut(s) 847, 1099, 1423
HpyCH4III ACNGT 6 cut(s) 36, 222, 416, 985, 1079, 1393
HpyCH4IV ACGT 3 cut(s) 93, 1155, 1209
HpyCH4V TGCA 5 cut(s) 626, 806, 880, 1039, 1311
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 338, 347, 647, 1457
HpyF3I CTNAG 5 cut(s) 328, 521, 867, 891, 1413
HpySE526I ACGT 3 cut(s) 93, 1155, 1209
Hsp92II CATG 3 cut(s) 340, 800, 880
HspAI GCGC 1 cut(s) 1384
KspAI GTTAAC 2 cut(s) 988, 1045
Kzo9I GATC 8 cut(s) 300, 333, 702, 915, 997, 1048, 1192, 1408
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 3 cut(s) 610, 721, 790
LweI GCATC 1 cut(s) 1447
MaeI CTAG 4 cut(s) 668, 935, 1094, 1364
MaeII ACGT 3 cut(s) 93, 1155, 1209
MaeIII GTNAC 5 cut(s) 443, 930, 1060, 1336, 1393
MalI GATC 8 cut(s) 302, 335, 704, 917, 999, 1050, 1194, 1410
MboI GATC 8 cut(s) 300, 333, 702, 915, 997, 1048, 1192, 1408
MflI RGATCY 1 cut(s) 1408
MhlI GDGCHC 3 cut(s) 379, 439, 535
MluCI AATT 4 cut(s) 255, 1110, 1304, 1355
MlyI GAGTC 5 cut(s) 42, 112, 619, 868, 1141
MroXI GAANNNNTTC 1 cut(s) 1203
MseI TTAA 7 cut(s) 15, 504, 675, 960, 987, 1044, 1320
MslI CAYNNNNRTG 1 cut(s) 1259
MspI CCGG 4 cut(s) 170, 181, 250, 471
MspR9I CCNGG 1 cut(s) 471
Mva1269I GAATGC 2 cut(s) 553, 724
MvnI CGCG 1 cut(s) 1386
MwoI GCNNNNNNNGC 5 cut(s) 166, 338, 347, 647, 1457
NciI CCSGG 1 cut(s) 471
NdeII GATC 8 cut(s) 300, 333, 702, 915, 997, 1048, 1192, 1408
NlaIII CATG 3 cut(s) 340, 800, 880
NlaIV GGNNCC 2 cut(s) 591, 1410
NmuCI GTSAC 4 cut(s) 443, 1060, 1336, 1393
NspI RCATGY 1 cut(s) 880
PctI GAATGC 2 cut(s) 553, 724
PdmI GAANNNNTTC 1 cut(s) 1203
PflMI CCANNNNNTGG 2 cut(s) 575, 599
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 3 cut(s) 625, 736, 805
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 5 cut(s) 42, 111, 618, 867, 1141
PpsI GAGTC 5 cut(s) 42, 111, 618, 867, 1141
PshBI ATTAAT 1 cut(s) 504
PspN4I GGNNCC 2 cut(s) 591, 1410
PspPI GGNCC 3 cut(s) 4, 602, 1342
PsrI GAACNNNNNNTAC 2 cut(s) 1194, 1226
PstI CTGCAG 1 cut(s) 808
PstNI CAGNNNCTG 1 cut(s) 132
PsuI RGATCY 1 cut(s) 1408
PvuI CGATCG 1 cut(s) 303
RsaI GTAC 5 cut(s) 830, 875, 977, 1203, 1445
RsaNI GTAC 5 cut(s) 829, 874, 976, 1202, 1444
RseI CAYNNNNRTG 1 cut(s) 1259
SaqAI TTAA 7 cut(s) 15, 504, 675, 960, 987, 1044, 1320
SatI GCNGC 3 cut(s) 624, 735, 804
Sau3AI GATC 8 cut(s) 300, 333, 702, 915, 997, 1048, 1192, 1408
Sau96I GGNCC 3 cut(s) 4, 602, 1342
ScaI AGTACT 1 cut(s) 1203
SchI GAGTC 5 cut(s) 42, 112, 619, 868, 1141
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 3 cut(s) 379, 439, 535
SfaNI GCATC 1 cut(s) 1447
SfcI CTRYAG 2 cut(s) 804, 1287
SinI GGWCC 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 1259
SmlI CTYRAG 1 cut(s) 1403
SmoI CTYRAG 1 cut(s) 1403
Sse9I AATT 4 cut(s) 255, 1110, 1304, 1355
SsiI CCGC 2 cut(s) 650, 1464
SspI AATATT 1 cut(s) 78
SspMI CTAG 4 cut(s) 668, 935, 1094, 1364
StyD4I CCNGG 1 cut(s) 469
TaaI ACNGT 6 cut(s) 36, 222, 416, 985, 1079, 1393
TaiI ACGT 3 cut(s) 96, 1158, 1212
TaqI TCGA 8 cut(s) 139, 299, 508, 558, 705, 1000, 1125, 1184
TasI AATT 4 cut(s) 255, 1110, 1304, 1355
TatI WGTACW 4 cut(s) 828, 873, 1201, 1443
Tru1I TTAA 7 cut(s) 15, 504, 675, 960, 987, 1044, 1320
Tru9I TTAA 7 cut(s) 15, 504, 675, 960, 987, 1044, 1320
TscAI CASTG 2 cut(s) 813, 988
TseFI GTSAC 4 cut(s) 443, 1060, 1336, 1393
TseI GCWGC 3 cut(s) 623, 734, 803
Tsp45I GTSAC 4 cut(s) 443, 1060, 1336, 1393
TspDTI ATGAA 4 cut(s) 792, 911, 1115, 1162
TspGWI ACGGA 1 cut(s) 1079
TspRI CASTG 2 cut(s) 813, 988
Van91I CCANNNNNTGG 2 cut(s) 575, 599
VpaK11BI GGWCC 1 cut(s) 602
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 2 cut(s) 255, 1355
XceI RCATGY 1 cut(s) 880
XmnI GAANNNNTTC 1 cut(s) 1203
XspI CTAG 4 cut(s) 668, 935, 1094, 1364
ZrmI AGTACT 1 cut(s) 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.