Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005966

Physical Location & Seq

Genomic Coordinates Forward (+)

6179749 .. 6182948

Gene Structure 3200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG060500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGCTTCGAGAGTCGTTGATCAACAACAAGCCAGAGGTATGGCAGTGGCCGGAGTAGGAGTTAAGCCACAGAAGAAGAACGCTGTGGCCGACGGGAGAAACCGAAAACCACTGGGTGAGATTGGTAACCAGCAACTTGTTCGAGGAGTTGAGATCAAGCCTAATCGCCCCATAACAAGGAACTTCCGGGCTCAATTACTAGCTAATGCACAGGCTGCGGCAGTTATTGAGAACAACAACAAGAAGCAAGTCTGTGCGAACGTGAATGAACTTGTGGCGGTTAAAAGGGATGAGGCACCCAAGCCAGTGCAGAAGAAAGTAGTTAATATCAAGTTGAAGCCCAAGGAGATAATCGAAATCAGCCCGGACACAGAGGAGGGCTTGATTGAAAAGGCTAAGCATGAGAAGAAGAAAGAAGGAGCTTCAAAGAAGAAAGCAGCACCAACTCTCACTTCAGTCCTTACTGCTAGAAGCAAGGCTGCTTGTGGTTTGACTAATAAACCAAAGGAACTGATTGTTGATATTGATGCCAAAGATGCTGGTAATGACTTGGCTGCTGTTGAATATGTTGAGGACATGTACAAGTTCTATAAGCTTGTTGAGAATGAGAACCGCCCTCATGACTATATGGACTCACAGCCTGAGATTAACGAAAACATGAGAGCAATTCTGATGGACTGGCTGGTAGTTGTTCACAGCAAGTTCGAGCTTTCTCCGGAGACTTTCTACCTAACCACCAACATAATTGATCGGTTCCTTTCGGTCAAGACTGTGCCAAGGAGGGAGTTGCAATTAGTTGGCATCAGTGCCATGCTAATCGCCTCAAAGTATGAAGAGATCTGGCCCCCTCAGGTCGATGACTTTGTGAGCCTTTCGGACAATGCTTACAGTAATGTGCAGATATTGGTGATGGAGAAAATGATACTGGGCAAGTTGGAATGGACCTTGACTGTGCCTACACTCTATGTGTTCCTAGTCCGGTTCATTAAAGCAGCAATTCCAGATGAACAAATGGAAAACCTTGTCTACTTTCTAGCTGAATTGGGTATGATGCATTATGGCATGCTTATGTACTGCCCTTCAATGGTTGCTGCCTCTGCAGTCTATGCTGCTAAATGCACTCTGAACAAGAGCCCTGCTTGGTGTGACACACTCAAGCTTCACACTGGTTTCTCAGAATCTCAACTAATGCAAGTACCTCACCTCTTGTCTTCTCTTCTTTTTGCTTTGAAAATCTGCAAGTGGTTTTTGTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

419

Amino Acids

47.1

Weight (kDa)

8.76

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	192 - 316	9.1e-49	Cyclin, N-terminal domain
Cyclin_C	PF02984	319 - 407	7.4e-26	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT3G11520 AT3G11520 AT4G37490 AT5G06150 AT5G06150
fragaria_vesca	FvH4_2g04990 FvH4_2g04990
malus_domestica	MD12G1093900.v1.1
pyrus_communis	pycom12g07970
rosa_chinensis	RchiOBHm_Chr6g0254751
rosa_laevigata	RLG00000014891
rosa_multiflora	Rmu_sc0007716.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210550
rosa_samantha	Rh6AG071900 Rh6BG064000 Rh6CG063400 Rh6DG060500
rosa_wichuraiana	Rw6G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	1026
AccIII	TCCGGA	1 cut(s)	715
AciI	CCGC	3 cut(s)	218, 278, 613
AcoI	YGGCCR	2 cut(s)	48, 87
AcuI	CTGAAG	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	3 cut(s)	581, 1073, 1197
AfiI	CCNNNNNNNGG	2 cut(s)	177, 1084
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	6 cut(s)	337, 389, 426, 563, 1083, 1231
AjuI	GAANNNNNNNTTGG	2 cut(s)	436, 468
AluBI	AGCT	6 cut(s)	203, 422, 595, 709, 1037, 1159
AluI	AGCT	6 cut(s)	203, 422, 595, 709, 1037, 1159
Alw26I	GTCTC	1 cut(s)	713
Aor13HI	TCCGGA	1 cut(s)	715
AoxI	GGCC	3 cut(s)	48, 87, 842
ApeKI	GCWGC	7 cut(s)	215, 437, 479, 554, 992, 1091, 1109
AspS9I	GGNCC	2 cut(s)	843, 942
AsuC2I	CCSGG	2 cut(s)	188, 365
AsuHPI	GGTGA	3 cut(s)	128, 919, 1193
AvaII	GGWCC	1 cut(s)	942
AxyI	CCTNAGG	1 cut(s)	849
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	193, 1136
BbsI	GAAGAC	1 cut(s)	1203
BbvI	GCAGC	7 cut(s)	202, 449, 466, 541, 1004, 1078, 1096
BccI	CCATC	2 cut(s)	667, 904
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	188, 365
BcoDI	GTCTC	1 cut(s)	713
BfaI	CTAG	4 cut(s)	200, 468, 974, 1034
BfmI	CTRYAG	1 cut(s)	1098
BglII	AGATCT	1 cut(s)	837
BisI	GCNGC	8 cut(s)	216, 219, 438, 480, 555, 993, 1092, 1110
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	8 cut(s)	217, 220, 439, 481, 556, 994, 1093, 1111
Bme1390I	CCNGG	2 cut(s)	188, 365
Bme18I	GGWCC	1 cut(s)	942
BmgT120I	GGNCC	2 cut(s)	843, 942
BmiI	GGNNCC	3 cut(s)	297, 755, 845
BmrFI	CCNGG	2 cut(s)	188, 365
BmrI	ACTGGG	2 cut(s)	122, 935
BmsI	GCATC	4 cut(s)	517, 526, 810, 1041
BmuI	ACTGGG	2 cut(s)	122, 935
BpiI	GAAGAC	1 cut(s)	1203
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	1139
BpuMI	CCSGG	2 cut(s)	188, 365
BsaJI	CCNNGG	2 cut(s)	342, 776
BsaWI	WCCGGW	2 cut(s)	715, 978
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 1084
Bse1I	ACTGG	5 cut(s)	117, 305, 683, 930, 1171
Bse21I	CCTNAGG	1 cut(s)	849
BseAI	TCCGGA	1 cut(s)	715
BseDI	CCNNGG	2 cut(s)	342, 776
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	2 cut(s)	177, 1084
BseMII	CTCAG	3 cut(s)	633, 863, 1188
BseNI	ACTGG	5 cut(s)	117, 305, 683, 930, 1171
BseRI	GAGGAG	2 cut(s)	159, 389
BseXI	GCAGC	7 cut(s)	202, 449, 466, 541, 1004, 1078, 1096
BsgI	GTGCAG	2 cut(s)	329, 917
BshFI	GGCC	3 cut(s)	50, 89, 844
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	5 cut(s)	51, 187, 365, 716, 979
BslI	CCNNNNNNNGG	2 cut(s)	177, 1084
BsmAI	GTCTC	1 cut(s)	713
BsnI	GGCC	3 cut(s)	50, 89, 844
Bsp1286I	GDGCHC	2 cut(s)	193, 1136
Bsp13I	TCCGGA	1 cut(s)	715
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	19, 153, 748, 837
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	3 cut(s)	218, 278, 613
BspANI	GGCC	3 cut(s)	50, 89, 844
BspCNI	CTCAG	3 cut(s)	634, 862, 1187
BspEI	TCCGGA	1 cut(s)	715
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	3 cut(s)	297, 755, 845
BspMAI	CTGCAG	1 cut(s)	1102
BspT107I	GGYRCC	1 cut(s)	295
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	5 cut(s)	117, 305, 683, 930, 1171
BssECI	CCNNGG	2 cut(s)	342, 776
BssMI	GATC	4 cut(s)	19, 153, 748, 837
BssT1I	CCWWGG	2 cut(s)	342, 776
Bst4CI	ACNGT	3 cut(s)	772, 890, 952
Bst6I	CTCTTC	2 cut(s)	828, 1221
BstAPI	GCANNNNNTGC	2 cut(s)	215, 1106
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	1064
BstDEI	CTNAG	4 cut(s)	396, 642, 849, 1174
BstEII	GGTNACC	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	4 cut(s)	22, 156, 751, 840
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	4 cut(s)	19, 153, 748, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 536, 1097, 1106
BstNSI	RCATGY	2 cut(s)	580, 1066
BstPI	GGTNACC	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	186, 363
BstSFI	CTRYAG	1 cut(s)	1098
BstV1I	GCAGC	7 cut(s)	202, 449, 466, 541, 1004, 1078, 1096
BstV2I	GAAGAC	1 cut(s)	1203
BstX2I	RGATCY	1 cut(s)	837
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	837
Bsu36I	CCTNAGG	1 cut(s)	849
BsuRI	GGCC	3 cut(s)	50, 89, 844
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	5 cut(s)	51, 110, 312, 811, 1164
Cac8I	GCNNGC	1 cut(s)	1064
CciI	TCATGA	1 cut(s)	619
Cfr13I	GGNCC	2 cut(s)	843, 942
Csp6I	GTAC	3 cut(s)	580, 1072, 1196
CviAII	CATG	6 cut(s)	401, 577, 620, 658, 811, 1063
CviQI	GTAC	3 cut(s)	580, 1072, 1196
DdeI	CTNAG	4 cut(s)	396, 642, 849, 1174
DpnI	GATC	4 cut(s)	21, 155, 750, 839
DpnII	GATC	4 cut(s)	19, 153, 748, 837
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	2 cut(s)	48, 87
Eam1104I	CTCTTC	2 cut(s)	828, 1221
EarI	CTCTTC	2 cut(s)	828, 1221
Eco130I	CCWWGG	2 cut(s)	342, 776
Eco24I	GRGCYC	2 cut(s)	193, 1136
Eco47I	GGWCC	1 cut(s)	942
Eco57I	CTGAAG	1 cut(s)	438
Eco81I	CCTNAGG	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	125
EcoO65I	GGTNACC	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	342, 776
EcoT22I	ATGCAT	1 cut(s)	1056
EcoT38I	GRGCYC	2 cut(s)	193, 1136
ErhI	CCWWGG	2 cut(s)	342, 776
FaeI	CATG	6 cut(s)	404, 580, 623, 661, 814, 1066
FatI	CATG	6 cut(s)	400, 576, 619, 657, 810, 1062
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	1026
Fnu4HI	GCNGC	8 cut(s)	216, 219, 438, 480, 555, 993, 1092, 1110
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	2 cut(s)	193, 1136
Fsp4HI	GCNGC	8 cut(s)	216, 219, 438, 480, 555, 993, 1092, 1110
FspBI	CTAG	4 cut(s)	200, 468, 974, 1034
GluI	GCNGC	8 cut(s)	216, 219, 438, 480, 555, 993, 1092, 1110
HaeIII	GGCC	3 cut(s)	50, 89, 844
HapII	CCGG	5 cut(s)	51, 187, 365, 716, 979
Hin1II	CATG	6 cut(s)	404, 580, 623, 661, 814, 1066
HindIII	AAGCTT	2 cut(s)	593, 1157
HinfI	GANTC	3 cut(s)	12, 632, 1178
HpaII	CCGG	5 cut(s)	51, 187, 365, 716, 979
HphI	GGTGA	3 cut(s)	128, 919, 1193
Hpy166II	GTNNAC	2 cut(s)	694, 1027
Hpy188I	TCNGA	4 cut(s)	672, 877, 1125, 1177
Hpy188III	TCNNGA	5 cut(s)	9, 620, 716, 766, 1001
Hpy8I	GTNNAC	2 cut(s)	694, 1027
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	410, 1089
HpyCH4III	ACNGT	3 cut(s)	772, 890, 952
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	9 cut(s)	209, 310, 790, 898, 1054, 1100, 1119, 1192, 1239
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 536, 1097, 1106
HpyF3I	CTNAG	4 cut(s)	396, 642, 849, 1174
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	6 cut(s)	404, 580, 623, 661, 814, 1066
Kpn2I	TCCGGA	1 cut(s)	715
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	19, 153, 748, 837
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	7 cut(s)	202, 449, 466, 541, 1004, 1078, 1096
LweI	GCATC	4 cut(s)	517, 526, 810, 1041
MaeI	CTAG	4 cut(s)	200, 468, 974, 1034
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	125, 1145
MalI	GATC	4 cut(s)	21, 155, 750, 839
MboI	GATC	4 cut(s)	19, 153, 748, 837
MboII	GAAGA	9 cut(s)	85, 88, 325, 418, 421, 442, 845, 1203, 1208
MflI	RGATCY	1 cut(s)	837
MhlI	GDGCHC	2 cut(s)	193, 1136
MluCI	AATT	6 cut(s)	194, 666, 744, 791, 996, 1040
MlyI	GAGTC	2 cut(s)	21, 626
MmeI	TCCRAC	1 cut(s)	915
Mph1103I	ATGCAT	1 cut(s)	1056
MroI	TCCGGA	1 cut(s)	715
MseI	TTAA	5 cut(s)	63, 282, 324, 648, 987
MslI	CAYNNNNRTG	1 cut(s)	1067
MspI	CCGG	5 cut(s)	51, 187, 365, 716, 979
MspR9I	CCNGG	2 cut(s)	188, 365
MwoI	GCNNNNNNNGC	4 cut(s)	215, 536, 1097, 1106
NciI	CCSGG	2 cut(s)	188, 365
NdeII	GATC	4 cut(s)	19, 153, 748, 837
NlaIII	CATG	6 cut(s)	404, 580, 623, 661, 814, 1066
NlaIV	GGNNCC	3 cut(s)	297, 755, 845
NmuCI	GTSAC	1 cut(s)	1145
NsiI	ATGCAT	1 cut(s)	1056
NspI	RCATGY	2 cut(s)	580, 1066
PaeI	GCATGC	1 cut(s)	1066
PagI	TCATGA	1 cut(s)	619
PciI	ACATGT	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	1178
PkrI	GCNGC	8 cut(s)	217, 220, 439, 481, 556, 994, 1093, 1111
PleI	GAGTC	2 cut(s)	20, 626
PpsI	GAGTC	2 cut(s)	20, 626
PscI	ACATGT	1 cut(s)	576
PspEI	GGTNACC	1 cut(s)	125
PspN4I	GGNNCC	3 cut(s)	297, 755, 845
PspPI	GGNCC	2 cut(s)	843, 942
PstI	CTGCAG	1 cut(s)	1102
PsuI	RGATCY	1 cut(s)	837
RsaI	GTAC	3 cut(s)	581, 1073, 1197
RsaNI	GTAC	3 cut(s)	580, 1072, 1196
RseI	CAYNNNNRTG	1 cut(s)	1067
SaqAI	TTAA	5 cut(s)	63, 282, 324, 648, 987
SatI	GCNGC	8 cut(s)	216, 219, 438, 480, 555, 993, 1092, 1110
Sau3AI	GATC	4 cut(s)	19, 153, 748, 837
Sau96I	GGNCC	2 cut(s)	843, 942
SchI	GAGTC	2 cut(s)	21, 626
ScrFI	CCNGG	2 cut(s)	188, 365
SduI	GDGCHC	2 cut(s)	193, 1136
SfaNI	GCATC	4 cut(s)	517, 526, 810, 1041
SfcI	CTRYAG	1 cut(s)	1098
SinI	GGWCC	1 cut(s)	942
SmiMI	CAYNNNNRTG	1 cut(s)	1067
SmlI	CTYRAG	1 cut(s)	1154
SmoI	CTYRAG	1 cut(s)	1154
SphI	GCATGC	1 cut(s)	1066
Sse9I	AATT	6 cut(s)	194, 666, 744, 791, 996, 1040
SsiI	CCGC	3 cut(s)	218, 278, 613
SspMI	CTAG	4 cut(s)	200, 468, 974, 1034
StyD4I	CCNGG	2 cut(s)	186, 363
StyI	CCWWGG	2 cut(s)	342, 776
TaaI	ACNGT	3 cut(s)	772, 890, 952
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	5 cut(s)	8, 142, 354, 705, 855
TaqII	GACCGA	1 cut(s)	751
TasI	AATT	6 cut(s)	194, 666, 744, 791, 996, 1040
TatI	WGTACW	2 cut(s)	579, 1071
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	1178
Tru1I	TTAA	5 cut(s)	63, 282, 324, 648, 987
Tru9I	TTAA	5 cut(s)	63, 282, 324, 648, 987
TscAI	CASTG	5 cut(s)	51, 117, 312, 811, 1171
TseFI	GTSAC	1 cut(s)	1145
TseI	GCWGC	7 cut(s)	215, 437, 479, 554, 992, 1091, 1109
Tsp45I	GTSAC	1 cut(s)	1145
TspDTI	ATGAA	4 cut(s)	282, 846, 973, 1020
TspRI	CASTG	5 cut(s)	51, 117, 312, 811, 1171
VpaK11BI	GGWCC	1 cut(s)	942
XceI	RCATGY	2 cut(s)	580, 1066
XmiI	GTMKAC	1 cut(s)	1026
XspI	CTAG	4 cut(s)	200, 468, 974, 1034
Zsp2I	ATGCAT	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.