MD12G1093900.v1.1

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
12394554 .. 12397312
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1093900.v1.1.491

Sequence Viewer

Length: 1425 bp
ATGGCTTCCAGAGCAGTAGTTGTTCCACAACAAGCGAGAGGTGAGGCAGCAGTTGCGGAGAGAGGAGGAGGTAGGCCGCTGAAAAAGAATGTTGTTGCAGCCGGCGATGGCAGAAGGCGAACAGCGCTAGGCGATATTGGAAATGTGGTAATAGACGGCAAGCCTAATCGGCCAGTAACAAGGAGCTTCTGTGCTCAATTACTCGCTAATGCGCAGGCTGCAGCAGCTGCCCAAAACAATAAGAAACAAATTGGTCTAAATGTGAAAAGAGATGCTCCTGTTGTTGTTGATGGTGTTAAAAGAGCTGAGGTACCAAAGGAGGTGGCAGCGGCGGCTCAGAAGAAGGTGAATGTTAACCAGCCCATGGCCAGGGAAGTCAAGGCAACAGAGGAAGAGAGCAATTTGACCGCTAAGCCAGTTAACAAGAAAAAGGAGGCAGACGGAACCTCAAGGAAGAAAGCACCAACTTATACTTCAGTCCTTACTGCTCGAAGCAAGGCTGCTTGTGGTGTGACTGATAAACCAAAGAGCCATAATAATATTGTTGATATTGATGCAAATGACGCCGGTAATGAATTGGCTGCTGTTGAATACATTGAGGACATGTACAAGTTTTATAAGCTTGTTGAGAATGAGAACCGCCCTCACGACTACATGGACTCACAGCCCGAGATTAATGAAAACATGAGAGCAATTCTGGTGGATTGGCTGGTTGATGTGCATACCAAGTTTGAACTCTCTCCTGAGACATTCTACCTGGCCATCAATATAATTGATCGCTTCCTTGCGGTTAAGATTGTTCCCAGGAAGGAGTTACAGTTAGTCGGCATCAGTGCTATGCTGATTGCCTCCAAGTATGAAGAAATCTGGGCCCCTGAAGTCAATGACTTTGTTTGCCTTTCAGACAGGGCTTACACTCATTCTCAGATACTCATCATGGAGAAGAAGATACTCGGAAAACTCGAATGGACCTTGACTGTGCCTACACTTTATGTGTTCCTCGTTCGTTTCATCAAAGCGTCAATTCCAGATCACCAAATGGAAAACATGGTTTATTTTCTGGCGGAGTTAGCTACGATGCACTACACCACGACTATGTACTGCCCCTCCATGATTGCAGCCTCAGCAGTCCATGTTGCCAAATGCACTTTAAACAAGAGTCCCGTTTGGTCCGAGACACTCAAGCTTCACACTGGTTTCTCAGAACCTCAGCTCAGAGATTGTTCCAAACTATTGGCGAGCTTGCACGCAATGGCAACAAAAAGTAAGCTTCAAGGTGTGTACAGCAAGTACTCAAATTCGGAGCACGGAGCTGTTGCACTGCTTCCACCGGCCAAAGCTCTTTTGGCTCGAGCTGGAACTCCGTCCACATCCACGTCCATCACTAGTATTGGTGCTGCTGCTGCCAAGGCCAGAGTAGTTTAA
Functional Annotation

Protein Analysis

475

Amino Acids

51.81

Weight (kDa)

9.26

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 201 - 325 8.6e-50 Cyclin, N-terminal domain
Cyclin_C PF02984 328 - 444 3.4e-34 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
Acc16I TGCGCA 1 cut(s) 213
Acc65I GGTACC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 310
AccB7I CCANNNNNTGG 1 cut(s) 364
AciI CCGC 8 cut(s) 56, 77, 329, 332, 408, 640, 788, 1064
AcoI YGGCCR 4 cut(s) 170, 366, 759, 1332
AcsI RAATTY 1 cut(s) 1297
AcuI CTGAAG 2 cut(s) 459, 897
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 5 cut(s) 312, 608, 1100, 1283, 1292
AfeI AGCGCT 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 364, 369
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 3 cut(s) 590, 734, 1274
AhlI ACTAGT 1 cut(s) 1385
AjiI CACGTC 1 cut(s) 1377
AjnI CCWGG 3 cut(s) 368, 756, 803
AjuI GAANNNNNNNTTGG 2 cut(s) 457, 489
Alw21I GWGCWC 2 cut(s) 196, 1308
Alw26I GTCTC 2 cut(s) 740, 1169
AlwNI CAGNNNCTG 1 cut(s) 227
Ama87I CYCGRG 2 cut(s) 668, 1350
Aor51HI AGCGCT 1 cut(s) 126
AoxI GGCC 7 cut(s) 74, 170, 366, 759, 870, 1332, 1410
ApaI GGGCCC 1 cut(s) 874
ApoI RAATTY 1 cut(s) 1297
AseI ATTAAT 1 cut(s) 675
Asp718I GGTACC 1 cut(s) 310
AspLEI GCGC 2 cut(s) 127, 214
AspS9I GGNCC 4 cut(s) 870, 871, 969, 1170
AsuHPI GGTGA 3 cut(s) 53, 358, 1025
AvaI CYCGRG 2 cut(s) 668, 1350
AvaII GGWCC 2 cut(s) 969, 1170
BaeGI GKGCMC 1 cut(s) 874
BalI TGGCCA 2 cut(s) 368, 761
BanI GGYRCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 874
Bbv12I GWGCWC 2 cut(s) 196, 1308
BbvCI CCTCAGC 3 cut(s) 306, 1123, 1209
BccI CCATC 4 cut(s) 101, 284, 770, 1388
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 3 cut(s) 370, 758, 805
BcoDI GTCTC 2 cut(s) 740, 1169
BcuI ACTAGT 1 cut(s) 1385
BfaI CTAG 2 cut(s) 128, 1386
BfmI CTRYAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 128
BglI GCCNNNNNGGC 1 cut(s) 169
BlpI GCTNAGC 1 cut(s) 411
BmcAI AGTACT 1 cut(s) 1292
Bme1390I CCNGG 3 cut(s) 370, 758, 805
Bme18I GGWCC 2 cut(s) 969, 1170
BmeT110I CYCGRG 2 cut(s) 668, 1350
BmgBI CACGTC 1 cut(s) 1377
BmgT120I GGNCC 4 cut(s) 870, 871, 969, 1170
BmiI GGNNCC 4 cut(s) 312, 445, 872, 873
BmrFI CCNGG 3 cut(s) 370, 758, 805
BmsI GCATC 4 cut(s) 262, 544, 837, 1068
Bpu10I CCTNAGC 3 cut(s) 306, 1123, 1209
Bpu1102I GCTNAGC 1 cut(s) 411
BpuEI CTTGAG 2 cut(s) 433, 1166
BsaBI GATNNNNATC 1 cut(s) 932
BsaHI GRCGYC 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 363, 369, 803, 1407
BsaXI ACNNNNNCTCC 6 cut(s) 175, 205, 803, 833, 1091, 1121
Bsc4I CCNNNNNNNGG 2 cut(s) 364, 369
Bse118I RCCGGY 3 cut(s) 101, 566, 1330
Bse1I ACTGG 3 cut(s) 173, 416, 1198
Bse3DI GCAATG 1 cut(s) 1257
Bse8I GATNNNNATC 1 cut(s) 932
BseBI CCWGG 3 cut(s) 370, 758, 805
BseDI CCNNGG 4 cut(s) 363, 369, 803, 1407
BseGI GGATG 1 cut(s) 1370
BseJI GATNNNNATC 1 cut(s) 932
BseLI CCNNNNNNNGG 2 cut(s) 364, 369
BseMI GCAATG 1 cut(s) 1257
BseMII CTCAG 8 cut(s) 297, 350, 735, 938, 1137, 1215, 1223, 1228
BseNI ACTGG 3 cut(s) 173, 416, 1198
BseRI GAGGAG 2 cut(s) 78, 81
BseSI GKGCMC 1 cut(s) 874
BshFI GGCC 7 cut(s) 76, 172, 368, 761, 872, 1334, 1412
BshNI GGYRCC 1 cut(s) 310
BsiHKAI GWGCWC 2 cut(s) 196, 1308
BsiHKCI CYCGRG 2 cut(s) 668, 1350
BsiSI CCGG 3 cut(s) 102, 567, 1331
BslFI GGGAC 1 cut(s) 1146
BslI CCNNNNNNNGG 2 cut(s) 364, 369
BsmAI GTCTC 2 cut(s) 740, 1169
BsmFI GGGAC 1 cut(s) 1146
BsnI GGCC 7 cut(s) 76, 172, 368, 761, 872, 1334, 1412
BsoBI CYCGRG 2 cut(s) 668, 1350
Bsp120I GGGCCC 1 cut(s) 870
Bsp1286I GDGCHC 3 cut(s) 196, 874, 1308
Bsp1407I TGTACA 2 cut(s) 606, 1281
Bsp143I GATC 2 cut(s) 775, 1030
Bsp1720I GCTNAGC 1 cut(s) 411
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 8 cut(s) 56, 77, 329, 332, 408, 640, 788, 1064
BspANI GGCC 7 cut(s) 76, 172, 368, 761, 872, 1334, 1412
BspCNI CTCAG 8 cut(s) 298, 349, 736, 937, 1136, 1214, 1222, 1227
BspLI GGNNCC 4 cut(s) 312, 445, 872, 873
BspMAI CTGCAG 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 1257
BsrFI RCCGGY 3 cut(s) 101, 566, 1330
BsrGI TGTACA 2 cut(s) 606, 1281
BsrI ACTGG 3 cut(s) 173, 416, 1198
BssAI RCCGGY 3 cut(s) 101, 566, 1330
BssECI CCNNGG 4 cut(s) 363, 369, 803, 1407
BssMI GATC 2 cut(s) 775, 1030
BssNI GRCGYC 1 cut(s) 564
BssT1I CCWWGG 2 cut(s) 363, 1407
Bst2UI CCWGG 3 cut(s) 370, 758, 805
Bst4CI ACNGT 2 cut(s) 819, 979
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 564
BstAPI GCANNNNNTGC 2 cut(s) 53, 227
BstAUI TGTACA 2 cut(s) 606, 1281
BstC8I GCNNGC 6 cut(s) 103, 161, 216, 1240, 1244, 1248
BstDEI CTNAG 9 cut(s) 306, 336, 411, 744, 924, 1123, 1201, 1209, 1214
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 1370
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 2 cut(s) 127, 214
BstKTI GATC 2 cut(s) 778, 1033
BstMAI GTCTC 2 cut(s) 740, 1169
BstMBI GATC 2 cut(s) 775, 1030
BstNI CCWGG 3 cut(s) 370, 758, 805
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 3 cut(s) 368, 756, 803
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 874
BstXI CCANNNNNNTGG 1 cut(s) 1234
BsuRI GGCC 7 cut(s) 76, 172, 368, 761, 872, 1334, 1412
BtgI CCRYGG 1 cut(s) 363
BtgZI GCGATG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 1377
BtsCI GGATG 1 cut(s) 1370
BtsI GCAGTG 1 cut(s) 1319
BtsIMutI CAGTG 3 cut(s) 838, 1191, 1319
Cac8I GCNNGC 6 cut(s) 103, 161, 216, 1240, 1244, 1248
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 2 cut(s) 127, 214
Cfr10I RCCGGY 3 cut(s) 101, 566, 1330
Cfr13I GGNCC 4 cut(s) 870, 871, 969, 1170
CseI GACGC 2 cut(s) 572, 1008
Csp6I GTAC 5 cut(s) 311, 607, 1099, 1282, 1291
CspCI CAANNNNNGTGG 4 cut(s) 303, 338, 681, 716
CviAII CATG 8 cut(s) 364, 604, 655, 685, 937, 1048, 1111, 1133
CviQI GTAC 5 cut(s) 311, 607, 1099, 1282, 1291
DdeI CTNAG 9 cut(s) 306, 336, 411, 744, 924, 1123, 1201, 1209, 1214
DpnI GATC 2 cut(s) 777, 1032
DpnII GATC 2 cut(s) 775, 1030
DraI TTTAAA 1 cut(s) 1152
EaeI YGGCCR 4 cut(s) 170, 366, 759, 1332
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
EciI GGCGGA 1 cut(s) 1079
Eco130I CCWWGG 2 cut(s) 363, 1407
Eco24I GRGCYC 1 cut(s) 874
Eco47I GGWCC 2 cut(s) 969, 1170
Eco47III AGCGCT 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 459, 897
Eco88I CYCGRG 2 cut(s) 668, 1350
EcoO109I RGGNCCY 1 cut(s) 871
EcoRII CCWGG 3 cut(s) 368, 756, 803
EcoT14I CCWWGG 2 cut(s) 363, 1407
EcoT38I GRGCYC 1 cut(s) 874
ErhI CCWWGG 2 cut(s) 363, 1407
FaeI CATG 8 cut(s) 367, 607, 658, 688, 940, 1051, 1114, 1136
FaqI GGGAC 1 cut(s) 1146
FatI CATG 8 cut(s) 363, 603, 654, 684, 936, 1047, 1110, 1132
FokI GGATG 1 cut(s) 1357
FriOI GRGCYC 1 cut(s) 874
FspBI CTAG 2 cut(s) 128, 1386
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 2 cut(s) 126, 213
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 7 cut(s) 76, 172, 368, 761, 872, 1334, 1412
HapII CCGG 3 cut(s) 102, 567, 1331
HgaI GACGC 2 cut(s) 572, 1008
HhaI GCGC 2 cut(s) 127, 214
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 8 cut(s) 367, 607, 658, 688, 940, 1051, 1114, 1136
Hin6I GCGC 2 cut(s) 125, 212
HinP1I GCGC 2 cut(s) 125, 212
HincII GTYRAC 2 cut(s) 355, 421
HindII GTYRAC 2 cut(s) 355, 421
HindIII AAGCTT 3 cut(s) 620, 1184, 1268
HinfI GANTC 2 cut(s) 659, 1159
HpaI GTTAAC 2 cut(s) 355, 421
HpaII CCGG 3 cut(s) 102, 567, 1331
HphI GGTGA 3 cut(s) 53, 358, 1025
Hpy166II GTNNAC 4 cut(s) 355, 421, 1282, 1368
Hpy188I TCNGA 8 cut(s) 339, 904, 927, 956, 1174, 1204, 1217, 1303
Hpy188III TCNNGA 4 cut(s) 9, 647, 743, 1028
Hpy8I GTNNAC 4 cut(s) 355, 421, 1282, 1368
HpyAV CCTTC 3 cut(s) 108, 337, 802
HpyCH4III ACNGT 2 cut(s) 819, 979
HpyCH4IV ACGT 1 cut(s) 1376
HpyCH4V TGCA 9 cut(s) 98, 221, 557, 721, 1081, 1118, 1146, 1246, 1319
HpyF3I CTNAG 9 cut(s) 306, 336, 411, 744, 924, 1123, 1201, 1209, 1214
HpySE526I ACGT 1 cut(s) 1376
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 8 cut(s) 367, 607, 658, 688, 940, 1051, 1114, 1136
HspAI GCGC 2 cut(s) 125, 212
KpnI GGTACC 1 cut(s) 314
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
KspAI GTTAAC 2 cut(s) 355, 421
Kzo9I GATC 2 cut(s) 775, 1030
LmnI GCTCC 4 cut(s) 183, 280, 1303, 1310
LweI GCATC 4 cut(s) 262, 544, 837, 1068
MaeI CTAG 2 cut(s) 128, 1386
MaeII ACGT 1 cut(s) 1376
MaeIII GTNAC 3 cut(s) 175, 511, 813
MalI GATC 2 cut(s) 777, 1032
MboI GATC 2 cut(s) 775, 1030
MboII GAAGA 6 cut(s) 352, 404, 466, 872, 955, 958
MhlI GDGCHC 3 cut(s) 196, 874, 1308
MlsI TGGCCA 2 cut(s) 368, 761
MluCI AATT 8 cut(s) 197, 249, 400, 575, 693, 771, 1023, 1297
MluNI TGGCCA 2 cut(s) 368, 761
MlyI GAGTC 2 cut(s) 653, 1168
Mox20I TGGCCA 2 cut(s) 368, 761
MroNI GCCGGC 1 cut(s) 101
MscI TGGCCA 2 cut(s) 368, 761
MseI TTAA 7 cut(s) 297, 354, 420, 675, 792, 1151, 1423
MslI CAYNNNNRTG 1 cut(s) 1094
Msp20I TGGCCA 2 cut(s) 368, 761
MspA1I CMGCKG 3 cut(s) 79, 227, 329
MspI CCGG 3 cut(s) 102, 567, 1331
MspR9I CCNGG 3 cut(s) 370, 758, 805
MvaI CCWGG 3 cut(s) 370, 758, 805
NaeI GCCGGC 1 cut(s) 103
NcoI CCATGG 1 cut(s) 363
NdeII GATC 2 cut(s) 775, 1030
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 8 cut(s) 367, 607, 658, 688, 940, 1051, 1114, 1136
NlaIV GGNNCC 4 cut(s) 312, 445, 872, 873
NmuCI GTSAC 1 cut(s) 511
NsbI TGCGCA 1 cut(s) 213
NspI RCATGY 1 cut(s) 607
PaeR7I CTCGAG 1 cut(s) 1350
PciI ACATGT 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 960
PdiI GCCGGC 1 cut(s) 103
PflMI CCANNNNNTGG 1 cut(s) 364
PleI GAGTC 2 cut(s) 653, 1167
PpsI GAGTC 2 cut(s) 653, 1167
PscI ACATGT 1 cut(s) 603
PshBI ATTAAT 1 cut(s) 675
PsiI TTATAA 1 cut(s) 618
Psp6I CCWGG 3 cut(s) 368, 756, 803
PspGI CCWGG 3 cut(s) 368, 756, 803
PspN4I GGNNCC 4 cut(s) 312, 445, 872, 873
PspOMI GGGCCC 1 cut(s) 870
PspPI GGNCC 4 cut(s) 870, 871, 969, 1170
PspXI VCTCGAGB 1 cut(s) 1350
PstI CTGCAG 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 5 cut(s) 312, 608, 1100, 1283, 1292
RsaNI GTAC 5 cut(s) 311, 607, 1099, 1282, 1291
RseI CAYNNNNRTG 1 cut(s) 1094
SaqAI TTAA 7 cut(s) 297, 354, 420, 675, 792, 1151, 1423
Sau3AI GATC 2 cut(s) 775, 1030
Sau96I GGNCC 4 cut(s) 870, 871, 969, 1170
ScaI AGTACT 1 cut(s) 1292
SchI GAGTC 2 cut(s) 653, 1168
ScrFI CCNGG 3 cut(s) 370, 758, 805
SduI GDGCHC 3 cut(s) 196, 874, 1308
SfaNI GCATC 4 cut(s) 262, 544, 837, 1068
SfcI CTRYAG 1 cut(s) 219
Sfr274I CTCGAG 1 cut(s) 1350
SinI GGWCC 2 cut(s) 969, 1170
SlaI CTCGAG 1 cut(s) 1350
SmiMI CAYNNNNRTG 1 cut(s) 1094
SmlI CTYRAG 3 cut(s) 448, 1181, 1350
SmoI CTYRAG 3 cut(s) 448, 1181, 1350
SpeI ACTAGT 1 cut(s) 1385
Sse9I AATT 8 cut(s) 197, 249, 400, 575, 693, 771, 1023, 1297
SsiI CCGC 8 cut(s) 56, 77, 329, 332, 408, 640, 788, 1064
SspI AATATT 1 cut(s) 541
SspMI CTAG 2 cut(s) 128, 1386
StyD4I CCNGG 3 cut(s) 368, 756, 803
StyI CCWWGG 2 cut(s) 363, 1407
TaaI ACNGT 2 cut(s) 819, 979
TaiI ACGT 1 cut(s) 1379
TaqI TCGA 3 cut(s) 490, 963, 1351
TasI AATT 8 cut(s) 197, 249, 400, 575, 693, 771, 1023, 1297
TatI WGTACW 4 cut(s) 606, 1098, 1281, 1290
TauI GCSGC 3 cut(s) 79, 332, 335
Tru1I TTAA 7 cut(s) 297, 354, 420, 675, 792, 1151, 1423
Tru9I TTAA 7 cut(s) 297, 354, 420, 675, 792, 1151, 1423
TscAI CASTG 3 cut(s) 838, 1198, 1326
TseFI GTSAC 1 cut(s) 511
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 4 cut(s) 588, 693, 873, 1000
TspGWI ACGGA 3 cut(s) 456, 1323, 1353
TspRI CASTG 3 cut(s) 838, 1198, 1326
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 969, 1170
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 1 cut(s) 1297
XceI RCATGY 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 1342
XhoI CTCGAG 1 cut(s) 1350
XspI CTAG 2 cut(s) 128, 1386
ZrmI AGTACT 1 cut(s) 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.