Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005966

Physical Location & Seq

Genomic Coordinates Forward (+)

9688405 .. 9691490

Gene Structure 3086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22851

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGCTTCGAGAGTCGTTGATCAACAACAAGCCAGAGGTATGGCAGTGGCCGGAGTAGGAGTTAAGCCACAGAAGAAGAACGCTGTGGCGGATGGGAGAAACCGAAAACCACTTGGTGAGATTGGTAACCAGCAACTTGTTCGAGGAATTGAGATCAAGCCGAATCGCCCCATAACAAGGAACTTCCGGGCTCAATTACTAGCTAATGCACAGGCTGCAGCAGCTAATGAGAACAACAAGAAGCAAGTTTGTGTCAACGTGAATGAACTTGTGGCGGTTAAAAGGGATGAGGCACCCAAGCCAGTGCAGAAGAAAGTAGTTAATATCAAGTTGAAGCCCAAGGAGATAATCGAAATCAGTCCGGACACAGAGGAAGGCTTGATTGAAAAGGTGCATGAGAAGAAGAAAGAAGGAGCTTCAAAGAAGAAAGCAGCACCAACTCTTACTTCAGTCCTTACTGCTAGAAGCAAGGCTGCTTGTGGTTTGACTAATAAACCAAAGGAAGTGATTGTTGATATTGATGCCAAAGATGCTGGTAATGACTTGGCTGCTGTTGAATATGTTGAGGACATGTACAAGTTCTATAAGCTTGTTGAGAATGAGAACCGCCCTCATGACTATTTGGACTCACAGGCCGAGATTAATGAAAACATGAGAGCAATTCTGATGGACTGGCTGGTAGTTGTTCACAGCAAGTTCGAGCTTTCTCCAGAGACTTTCTACCTAACCACCAACATAATTGATCGGTTCCTTTCAGTCAAGACTGTGCCAAGGAGAGAGTTGCAATTAGTTGGCATCAGCGCCATGCTGATTGCCTCAAAGTATGAGGAGATCTGGCCCCCTCAGGTCGATGACTTTGTTAGCCTTTCGGACAATGCTTACAGTAATGTGCAGATATTGGTGATGGAGAAAATGATACTGGGCAAGTTGGAGTGGACCTTGACTGTACCTACACTCTATGTGTTCTTGGTCCGGTTCATTAAAGCAGCAATTTCAGATGAACAAATGGAAAACCTGGTCTACTTTTTAGCGGAATTGGGTATGATGCATTATGGCATGCTAATGTACTGCCCTTCAATGGTTGCTGCCTCTGCAGTCTATGCTGCTAAATGCACTCTAAACAAGAGTCCTGCTTGGTGTGACACGCTTAAGCTTCACACTGGTTTCTCAGAATCTCAACTAATTGATTGTTCCAAAGTGTTGGTGAGCTTGCATGCTAAGGCTGCAAAAAACAAGCTTCAGGGTGTGTTCAAGAAGTACTTGAGTTCTGAGAGAGGTGCTGTGGCTTTGCTGTCTCCAGCCAAAGTGCTTTTGCCCCCAGCCAAAGCTTCAGGAGGATCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

448

Amino Acids

49.6

Weight (kDa)

9.12

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	190 - 314	1.4e-47	Cyclin, N-terminal domain
Cyclin_C	PF02984	317 - 433	3.9e-36	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT3G11520 AT3G11520 AT4G37490 AT5G06150 AT5G06150
fragaria_vesca	FvH4_2g04990 FvH4_2g04990
malus_domestica	MD12G1093900.v1.1
pyrus_communis	pycom12g07970
rosa_chinensis	RchiOBHm_Chr6g0254751
rosa_laevigata	RLG00000014891
rosa_multiflora	Rmu_sc0007716.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210550
rosa_samantha	Rh6AG071900 Rh6BG064000 Rh6CG063400 Rh6DG060500
rosa_wichuraiana	Rw6G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	1020
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	4 cut(s)	89, 275, 607, 1031
AclWI	GGATC	1 cut(s)	1345
AcoI	YGGCCR	1 cut(s)	48
AcuI	CTGAAG	3 cut(s)	432, 1223, 1314
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	4 cut(s)	575, 948, 1067, 1259
AfiI	CCNNNNNNNGG	2 cut(s)	177, 1078
AflII	CTTAAG	1 cut(s)	1148
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	6 cut(s)	334, 386, 420, 557, 1077, 1252
AjnI	CCWGG	1 cut(s)	1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	430, 462
AluBI	AGCT	9 cut(s)	203, 224, 416, 589, 703, 1153, 1209, 1237, 1328
AluI	AGCT	9 cut(s)	203, 224, 416, 589, 703, 1153, 1209, 1237, 1328
Alw26I	GTCTC	2 cut(s)	707, 1299
AlwI	GGATC	1 cut(s)	1345
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	3 cut(s)	48, 633, 836
AseI	ATTAAT	1 cut(s)	642
AspLEI	GCGC	1 cut(s)	803
AspS9I	GGNCC	3 cut(s)	837, 936, 970
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	3 cut(s)	128, 913, 1216
AvaII	GGWCC	2 cut(s)	936, 970
AxyI	CCTNAGG	1 cut(s)	843
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	193
BccI	CCATC	3 cut(s)	86, 661, 898
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	1 cut(s)	1016
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	707, 1299
BfaI	CTAG	2 cut(s)	200, 462
BfmI	CTRYAG	2 cut(s)	216, 1092
BfoI	RGCGCY	1 cut(s)	804
BfrI	CTTAAG	1 cut(s)	1148
BglII	AGATCT	1 cut(s)	831
BmcAI	AGTACT	1 cut(s)	1259
Bme1390I	CCNGG	2 cut(s)	188, 1016
Bme18I	GGWCC	2 cut(s)	936, 970
BmgT120I	GGNCC	3 cut(s)	837, 936, 970
BmiI	GGNNCC	3 cut(s)	294, 749, 839
BmrFI	CCNGG	2 cut(s)	188, 1016
BmrI	ACTGGG	1 cut(s)	929
BmsI	GCATC	4 cut(s)	511, 520, 804, 1035
BmuI	ACTGGG	1 cut(s)	929
BpmI	CTGGAG	2 cut(s)	693, 1281
Bpu10I	CCTNAGC	1 cut(s)	1218
BpuEI	CTTGAG	1 cut(s)	1282
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	339, 770
BsaWI	WCCGGW	2 cut(s)	361, 972
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 1078
Bse1I	ACTGG	4 cut(s)	302, 677, 924, 1165
Bse21I	CCTNAGG	1 cut(s)	843
BseAI	TCCGGA	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	1016
BseDI	CCNNGG	2 cut(s)	339, 770
BseGI	GGATG	2 cut(s)	97, 292
BseLI	CCNNNNNNNGG	2 cut(s)	177, 1078
BseMII	CTCAG	3 cut(s)	857, 1182, 1260
BseNI	ACTGG	4 cut(s)	302, 677, 924, 1165
BseRI	GAGGAG	1 cut(s)	842
BseYI	CCCAGC	1 cut(s)	1318
BsgI	GTGCAG	2 cut(s)	326, 911
BshFI	GGCC	3 cut(s)	50, 635, 838
BshNI	GGYRCC	1 cut(s)	292
BsiSI	CCGG	4 cut(s)	51, 187, 362, 973
BslI	CCNNNNNNNGG	2 cut(s)	177, 1078
BsmAI	GTCTC	2 cut(s)	707, 1299
BsnI	GGCC	3 cut(s)	50, 635, 838
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp13I	TCCGGA	1 cut(s)	361
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	5 cut(s)	19, 153, 742, 831, 1337
BspACI	CCGC	4 cut(s)	89, 275, 607, 1031
BspANI	GGCC	3 cut(s)	50, 635, 838
BspCNI	CTCAG	3 cut(s)	856, 1181, 1261
BspEI	TCCGGA	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	3 cut(s)	294, 749, 839
BspMAI	CTGCAG	2 cut(s)	220, 1096
BspPI	GGATC	1 cut(s)	1345
BspT107I	GGYRCC	1 cut(s)	292
BspTI	CTTAAG	1 cut(s)	1148
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	4 cut(s)	302, 677, 924, 1165
BssECI	CCNNGG	2 cut(s)	339, 770
BssMI	GATC	5 cut(s)	19, 153, 742, 831, 1337
BssT1I	CCWWGG	2 cut(s)	339, 770
Bst2UI	CCWGG	1 cut(s)	1016
Bst4CI	ACNGT	3 cut(s)	766, 884, 946
BstAFI	CTTAAG	1 cut(s)	1148
BstAPI	GCANNNNNTGC	2 cut(s)	215, 1100
BstAUI	TGTACA	1 cut(s)	573
BstC8I	GCNNGC	3 cut(s)	1058, 1211, 1215
BstDEI	CTNAG	4 cut(s)	843, 1168, 1218, 1269
BstEII	GGTNACC	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	97, 292
BstH2I	RGCGCY	1 cut(s)	804
BstHHI	GCGC	1 cut(s)	803
BstKTI	GATC	5 cut(s)	22, 156, 745, 834, 1340
BstMAI	GTCTC	2 cut(s)	707, 1299
BstMBI	GATC	5 cut(s)	19, 153, 742, 831, 1337
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 221, 530, 1091, 1100, 1223
BstNI	CCWGG	1 cut(s)	1016
BstNSI	RCATGY	3 cut(s)	574, 1060, 1217
BstPI	GGTNACC	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	186, 1014
BstSFI	CTRYAG	2 cut(s)	216, 1092
BstX2I	RGATCY	2 cut(s)	831, 1337
BstXI	CCANNNNNNTGG	2 cut(s)	40, 1201
BstYI	RGATCY	2 cut(s)	831, 1337
Bsu36I	CCTNAGG	1 cut(s)	843
BsuRI	GGCC	3 cut(s)	50, 635, 838
BtsCI	GGATG	2 cut(s)	97, 292
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	3 cut(s)	51, 309, 1158
Cac8I	GCNNGC	3 cut(s)	1058, 1211, 1215
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	1 cut(s)	803
Cfr13I	GGNCC	3 cut(s)	837, 936, 970
CsiI	ACCWGGT	1 cut(s)	1014
Csp6I	GTAC	4 cut(s)	574, 947, 1066, 1258
CviAII	CATG	7 cut(s)	395, 571, 614, 652, 805, 1057, 1214
CviQI	GTAC	4 cut(s)	574, 947, 1066, 1258
DdeI	CTNAG	4 cut(s)	843, 1168, 1218, 1269
DpnI	GATC	5 cut(s)	21, 155, 744, 833, 1339
DpnII	GATC	5 cut(s)	19, 153, 742, 831, 1337
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	104
Eco130I	CCWWGG	2 cut(s)	339, 770
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	936, 970
Eco57I	CTGAAG	3 cut(s)	432, 1223, 1314
Eco81I	CCTNAGG	1 cut(s)	843
Eco91I	GGTNACC	1 cut(s)	125
EcoO65I	GGTNACC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	1014
EcoT14I	CCWWGG	2 cut(s)	339, 770
EcoT22I	ATGCAT	1 cut(s)	1050
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	339, 770
FaeI	CATG	7 cut(s)	398, 574, 617, 655, 808, 1060, 1217
FalI	AAGNNNNNCTT	2 cut(s)	1244, 1276
FatI	CATG	7 cut(s)	394, 570, 613, 651, 804, 1056, 1213
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	1020
FokI	GGATG	2 cut(s)	104, 299
FriOI	GRGCYC	1 cut(s)	193
FspBI	CTAG	2 cut(s)	200, 462
GlaI	GCGC	1 cut(s)	802
GsaI	CCCAGC	1 cut(s)	1322
GsuI	CTGGAG	2 cut(s)	693, 1281
HaeII	RGCGCY	1 cut(s)	804
HaeIII	GGCC	3 cut(s)	50, 635, 838
HapII	CCGG	4 cut(s)	51, 187, 362, 973
HhaI	GCGC	1 cut(s)	803
Hin1II	CATG	7 cut(s)	398, 574, 617, 655, 808, 1060, 1217
Hin6I	GCGC	1 cut(s)	801
HinP1I	GCGC	1 cut(s)	801
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	4 cut(s)	587, 1151, 1235, 1326
HinfI	GANTC	5 cut(s)	12, 163, 626, 1126, 1172
HpaII	CCGG	4 cut(s)	51, 187, 362, 973
HphI	GGTGA	3 cut(s)	128, 913, 1216
Hpy166II	GTNNAC	4 cut(s)	256, 688, 936, 1021
Hpy188I	TCNGA	5 cut(s)	666, 871, 997, 1171, 1270
Hpy188III	TCNNGA	7 cut(s)	9, 362, 614, 710, 760, 1252, 1332
Hpy8I	GTNNAC	4 cut(s)	256, 688, 936, 1021
HpyAV	CCTTC	3 cut(s)	368, 404, 1083
HpyCH4III	ACNGT	3 cut(s)	766, 884, 946
HpyCH4IV	ACGT	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 221, 530, 1091, 1100, 1223
HpyF3I	CTNAG	4 cut(s)	843, 1168, 1218, 1269
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	7 cut(s)	398, 574, 617, 655, 808, 1060, 1217
HspAI	GCGC	1 cut(s)	801
Kpn2I	TCCGGA	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	5 cut(s)	19, 153, 742, 831, 1337
LmnI	GCTCC	1 cut(s)	413
LweI	GCATC	4 cut(s)	511, 520, 804, 1035
MabI	ACCWGGT	1 cut(s)	1014
MaeI	CTAG	2 cut(s)	200, 462
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	125, 1139
MalI	GATC	5 cut(s)	21, 155, 744, 833, 1339
MboI	GATC	5 cut(s)	19, 153, 742, 831, 1337
MboII	GAAGA	7 cut(s)	85, 88, 322, 412, 415, 436, 1332
MflI	RGATCY	2 cut(s)	831, 1337
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	8 cut(s)	147, 194, 660, 738, 785, 990, 1034, 1182
MlyI	GAGTC	3 cut(s)	21, 620, 1135
MmeI	TCCRAC	1 cut(s)	909
Mph1103I	ATGCAT	1 cut(s)	1050
MroI	TCCGGA	1 cut(s)	361
MseI	TTAA	6 cut(s)	63, 279, 321, 642, 981, 1149
MslI	CAYNNNNRTG	1 cut(s)	1061
MspCI	CTTAAG	1 cut(s)	1148
MspI	CCGG	4 cut(s)	51, 187, 362, 973
MspR9I	CCNGG	2 cut(s)	188, 1016
MvaI	CCWGG	1 cut(s)	1016
MwoI	GCNNNNNNNGC	6 cut(s)	215, 221, 530, 1091, 1100, 1223
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	5 cut(s)	19, 153, 742, 831, 1337
NlaIII	CATG	7 cut(s)	398, 574, 617, 655, 808, 1060, 1217
NlaIV	GGNNCC	3 cut(s)	294, 749, 839
NmeAIII	GCCGAG	1 cut(s)	661
NmuCI	GTSAC	1 cut(s)	1139
NsiI	ATGCAT	1 cut(s)	1050
NspI	RCATGY	3 cut(s)	574, 1060, 1217
PaeI	GCATGC	2 cut(s)	1060, 1217
PagI	TCATGA	1 cut(s)	613
PciI	ACATGT	1 cut(s)	570
PfeI	GAWTC	2 cut(s)	163, 1172
PleI	GAGTC	3 cut(s)	20, 620, 1134
PpsI	GAGTC	3 cut(s)	20, 620, 1134
PscI	ACATGT	1 cut(s)	570
PshBI	ATTAAT	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	1014
PspEI	GGTNACC	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	1318
PspGI	CCWGG	1 cut(s)	1014
PspN4I	GGNNCC	3 cut(s)	294, 749, 839
PspPI	GGNCC	3 cut(s)	837, 936, 970
PstI	CTGCAG	2 cut(s)	220, 1096
PsuI	RGATCY	2 cut(s)	831, 1337
RsaI	GTAC	4 cut(s)	575, 948, 1067, 1259
RsaNI	GTAC	4 cut(s)	574, 947, 1066, 1258
RseI	CAYNNNNRTG	1 cut(s)	1061
SaqAI	TTAA	6 cut(s)	63, 279, 321, 642, 981, 1149
Sau3AI	GATC	5 cut(s)	19, 153, 742, 831, 1337
Sau96I	GGNCC	3 cut(s)	837, 936, 970
ScaI	AGTACT	1 cut(s)	1259
SchI	GAGTC	3 cut(s)	21, 620, 1135
ScrFI	CCNGG	2 cut(s)	188, 1016
SduI	GDGCHC	1 cut(s)	193
SexAI	ACCWGGT	1 cut(s)	1014
SfaNI	GCATC	4 cut(s)	511, 520, 804, 1035
SfcI	CTRYAG	2 cut(s)	216, 1092
SinI	GGWCC	2 cut(s)	936, 970
SmiMI	CAYNNNNRTG	1 cut(s)	1061
SmlI	CTYRAG	2 cut(s)	1148, 1261
SmoI	CTYRAG	2 cut(s)	1148, 1261
SphI	GCATGC	2 cut(s)	1060, 1217
Sse9I	AATT	8 cut(s)	147, 194, 660, 738, 785, 990, 1034, 1182
SsiI	CCGC	4 cut(s)	89, 275, 607, 1031
SspMI	CTAG	2 cut(s)	200, 462
StyD4I	CCNGG	2 cut(s)	186, 1014
StyI	CCWWGG	2 cut(s)	339, 770
TaaI	ACNGT	3 cut(s)	766, 884, 946
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	5 cut(s)	8, 142, 351, 699, 849
TasI	AATT	8 cut(s)	147, 194, 660, 738, 785, 990, 1034, 1182
TatI	WGTACW	3 cut(s)	573, 1065, 1257
TfiI	GAWTC	2 cut(s)	163, 1172
Tru1I	TTAA	6 cut(s)	63, 279, 321, 642, 981, 1149
Tru9I	TTAA	6 cut(s)	63, 279, 321, 642, 981, 1149
TscAI	CASTG	3 cut(s)	51, 309, 1165
TseFI	GTSAC	1 cut(s)	1139
Tsp45I	GTSAC	1 cut(s)	1139
TspDTI	ATGAA	5 cut(s)	279, 660, 967, 1014, 1332
TspRI	CASTG	3 cut(s)	51, 309, 1165
Vha464I	CTTAAG	1 cut(s)	1148
VpaK11BI	GGWCC	2 cut(s)	936, 970
VspI	ATTAAT	1 cut(s)	642
XceI	RCATGY	3 cut(s)	574, 1060, 1217
XmiI	GTMKAC	1 cut(s)	1020
XspI	CTAG	2 cut(s)	200, 462
ZrmI	AGTACT	1 cut(s)	1259
Zsp2I	ATGCAT	1 cut(s)	1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.