Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005966

Physical Location & Seq

Genomic Coordinates Reverse (-)

3625286 .. 3627273

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGCGACAGGACCAGTTGTTCATCCTCAACCAGTTAGAGGTGATCCCATCGACCTCAAAAACGCAGCAGCAAAGAATCGTCGTGCTCTTGGCGACATTGGAAACGTCGATTCTCTTATTGGAGTCGAAGGAGGAAAGCTTAACCGCCCCATTACTCGTAACTTTCGTGCTCAGTTGCTAGAAAACGCACAAGTTGCAGCCGCCGCTAACAAAAAGGCTCCGATTCTTGATGGAGTTACTAAGAAACAAGAAGTTGTAAGAGCGGTTCAAAAGAAAGCAAGAGGTGATAAGCGTGAGCCGTCAAAACCAATCGAAGTGATTGTGATAAGTCCTGATACAAACGAGGTTGCTAAAGCTAAAGAGAACAAGAAGAAAGTGACATACTCTTCGGTTCTTGATGCTCGAAGCAAGGCTGCTTCTAAGACTTTGGATATTGATTATGTCGACAAAGAAAATGATCTTGCTGCTGTGGAATACGTTGAGGATATGTACATTTTCTACAAAGAAGTTGTGAATGAGAGCAAACCTCAGATGTATATGCATACACAACCTGAGATTGATGAGAAGATGAGATCAATCCTTATTGATTGGCTTGTAGAAGTTCATGTCAAGTTTGATCTCTCCCCTGAGACTCTTTACCTCACTGTCAACATAATTGATCGTTTTCTTTCTCTGAAGACTGTGCCTAGAAGAGAACTACAGCTTGTAGGTGTTAGTGCTTTGCTTATAGCTTCGAAGTACGAAGAAATCTGGCCTCCTCAGGTCAATGATTTGGTATATGTGACTGATAACTCCTACAACAGCAGACAGATTCTAGTGATGGAGAAAACCATTTTGGGGAATCTTGAATGGTACTTGACAGTTCCAACACAGTATGTGTTCCTTGTGAGGTTTATTAAAGCCTCGGGTTCTGACCAGAAACTGGAGAACTTGGTTCACTTTCTAGCTGAGTTGGGTTTGATGCATCACGACAGTTTAATGTTCTGTCCTTCCATGCTTGCTGCATCAGCGGTCTACACAGCAAGGTGTTGCTTGAACAAGACTCCTACTTGGACTGATACACTGAAATTCCACACAGGCTACTCCGAATCTCAGCTCATGGATTGCTCAAAGCTTTTAGCTTTCATTCACTCGAAAGCGGGGGAGAGCAAGCTACGTGGTGTGTTGAAGAAGTATTCGAAACTTGGAAGAGGTGCTGTTGCTCTGATTTCACCAGCCAAGTCTCTTATGTCATCTGCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

414

Amino Acids

46.27

Weight (kDa)

9.02

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	163 - 287	1e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	289 - 368	1.2e-26	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT3G11520 AT3G11520 AT4G37490 AT5G06150 AT5G06150
fragaria_vesca	FvH4_2g04990 FvH4_2g04990
malus_domestica	MD12G1093900.v1.1
pyrus_communis	pycom12g07970
rosa_chinensis	RchiOBHm_Chr6g0254751
rosa_laevigata	RLG00000014891
rosa_multiflora	Rmu_sc0007716.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210550
rosa_samantha	Rh6AG071900 Rh6BG064000 Rh6CG063400 Rh6DG060500
rosa_wichuraiana	Rw6G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	922
AccBSI	CCGCTC	1 cut(s)	263
AccI	GTMKAC	2 cut(s)	444, 1014
AciI	CCGC	6 cut(s)	145, 201, 204, 263, 1010, 1139
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	1067
AcuI	CTGAAG	1 cut(s)	695
AfaI	GTAC	3 cut(s)	491, 740, 854
AfiI	CCNNNNNNNGG	3 cut(s)	38, 837, 922
AgsI	TTSAA	4 cut(s)	269, 848, 1036, 1168
AjuI	GAANNNNNNNTTGG	2 cut(s)	818, 850
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	9 cut(s)	139, 356, 703, 731, 947, 1096, 1114, 1121, 1153
AluI	AGCT	9 cut(s)	139, 356, 703, 731, 947, 1096, 1114, 1121, 1153
Alw21I	GWGCWC	2 cut(s)	88, 172
Alw26I	GTCTC	2 cut(s)	623, 1227
AlwI	GGATC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	922
Ama87I	CYCGRG	1 cut(s)	904
AoxI	GGCC	1 cut(s)	752
ApeKI	GCWGC	6 cut(s)	65, 68, 197, 413, 464, 1001
ApoI	RAATTY	1 cut(s)	1067
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	53, 296, 1203
AsuII	TTCGAA	2 cut(s)	734, 1178
AvaI	CYCGRG	1 cut(s)	904
AvaII	GGWCC	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	759
BbsI	GAAGAC	1 cut(s)	683
Bbv12I	GWGCWC	2 cut(s)	88, 172
BbvI	GCAGC	6 cut(s)	77, 80, 209, 400, 451, 988
BccI	CCATC	3 cut(s)	56, 224, 814
BceAI	ACGGC	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	623, 1227
BfaI	CTAG	4 cut(s)	179, 687, 815, 944
BfmI	CTRYAG	1 cut(s)	698
BisI	GCNGC	8 cut(s)	66, 69, 198, 201, 204, 414, 465, 1002
BlsI	GCNGC	8 cut(s)	67, 70, 199, 202, 205, 415, 466, 1003
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	904
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	4 cut(s)	388, 951, 973, 1013
BpiI	GAAGAC	1 cut(s)	683
BplI	GAGNNNNNCTC	2 cut(s)	511, 543
BpmI	CTGGAG	1 cut(s)	944
Bpu14I	TTCGAA	2 cut(s)	734, 1178
BsaAI	YACGTR	1 cut(s)	1157
BsaJI	CCNNGG	1 cut(s)	903
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 837, 922
Bse1I	ACTGG	3 cut(s)	14, 32, 927
Bse21I	CCTNAGG	1 cut(s)	759
BseDI	CCNNGG	1 cut(s)	903
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	3 cut(s)	38, 837, 922
BseMII	CTCAG	7 cut(s)	185, 542, 543, 618, 773, 939, 1106
BseNI	ACTGG	3 cut(s)	14, 32, 927
BseRI	GAGGAG	1 cut(s)	747
BseXI	GCAGC	6 cut(s)	77, 80, 209, 400, 451, 988
BshFI	GGCC	1 cut(s)	754
BsiHKAI	GWGCWC	2 cut(s)	88, 172
BsiHKCI	CYCGRG	1 cut(s)	904
BslI	CCNNNNNNNGG	3 cut(s)	38, 837, 922
BsmAI	GTCTC	2 cut(s)	623, 1227
BsnI	GGCC	1 cut(s)	754
BsoBI	CYCGRG	1 cut(s)	904
Bsp119I	TTCGAA	2 cut(s)	734, 1178
Bsp1286I	GDGCHC	2 cut(s)	88, 172
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	5 cut(s)	43, 457, 572, 616, 658
BspACI	CCGC	6 cut(s)	145, 201, 204, 263, 1010, 1139
BspANI	GGCC	1 cut(s)	754
BspCNI	CTCAG	7 cut(s)	184, 541, 544, 619, 772, 940, 1105
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	38
BspT104I	TTCGAA	2 cut(s)	734, 1178
BsrBI	CCGCTC	1 cut(s)	263
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	3 cut(s)	14, 32, 927
BssECI	CCNNGG	1 cut(s)	903
BssMI	GATC	5 cut(s)	43, 457, 572, 616, 658
Bst4CI	ACNGT	5 cut(s)	646, 682, 862, 873, 974
Bst6I	CTCTTC	3 cut(s)	391, 685, 1183
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	1157
BstBI	TTCGAA	2 cut(s)	734, 1178
BstC8I	GCNNGC	2 cut(s)	999, 1151
BstDEI	CTNAG	9 cut(s)	171, 240, 420, 528, 552, 627, 759, 948, 1092
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	5 cut(s)	46, 460, 575, 619, 661
BstMAI	GTCTC	2 cut(s)	623, 1227
BstMBI	GATC	5 cut(s)	43, 457, 572, 616, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 203, 1007
BstSFI	CTRYAG	1 cut(s)	698
BstV1I	GCAGC	6 cut(s)	77, 80, 209, 400, 451, 988
BstV2I	GAAGAC	1 cut(s)	683
Bsu36I	CCTNAGG	1 cut(s)	759
BsuRI	GGCC	1 cut(s)	754
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	642, 1061
Cac8I	GCNNGC	2 cut(s)	999, 1151
CaiI	CAGNNNCTG	1 cut(s)	922
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	3 cut(s)	490, 739, 853
CspCI	CAANNNNNGTGG	2 cut(s)	1138, 1173
CviAII	CATG	4 cut(s)	605, 994, 1099, 1242
CviQI	GTAC	3 cut(s)	490, 739, 853
DdeI	CTNAG	9 cut(s)	171, 240, 420, 528, 552, 627, 759, 948, 1092
DpnI	GATC	5 cut(s)	45, 459, 574, 618, 660
DpnII	GATC	5 cut(s)	43, 457, 572, 616, 658
Eam1104I	CTCTTC	3 cut(s)	391, 685, 1183
EarI	CTCTTC	3 cut(s)	391, 685, 1183
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	695
Eco81I	CCTNAGG	1 cut(s)	759
Eco88I	CYCGRG	1 cut(s)	904
EcoT22I	ATGCAT	2 cut(s)	543, 966
FaeI	CATG	4 cut(s)	608, 997, 1102, 1245
FatI	CATG	4 cut(s)	604, 993, 1098, 1241
FauI	CCCGC	1 cut(s)	1132
FblI	GTMKAC	2 cut(s)	444, 1014
Fnu4HI	GCNGC	8 cut(s)	66, 69, 198, 201, 204, 414, 465, 1002
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	8 cut(s)	66, 69, 198, 201, 204, 414, 465, 1002
FspBI	CTAG	4 cut(s)	179, 687, 815, 944
GluI	GCNGC	8 cut(s)	66, 69, 198, 201, 204, 414, 465, 1002
GsuI	CTGGAG	1 cut(s)	944
HaeIII	GGCC	1 cut(s)	754
Hin1II	CATG	4 cut(s)	608, 997, 1102, 1245
HincII	GTYRAC	2 cut(s)	445, 649
HindII	GTYRAC	2 cut(s)	445, 649
HindIII	AAGCTT	2 cut(s)	137, 1112
HinfI	GANTC	9 cut(s)	76, 110, 123, 223, 631, 811, 841, 1042, 1088
HphI	GGTGA	3 cut(s)	53, 296, 1203
Hpy166II	GTNNAC	4 cut(s)	445, 649, 937, 1015
Hpy188I	TCNGA	6 cut(s)	222, 531, 675, 913, 1087, 1206
Hpy188III	TCNNGA	5 cut(s)	227, 332, 395, 845, 968
Hpy8I	GTNNAC	4 cut(s)	445, 649, 937, 1015
Hpy99I	CGWCG	2 cut(s)	84, 110
HpyAV	CCTTC	2 cut(s)	122, 999
HpyCH4III	ACNGT	5 cut(s)	646, 682, 862, 873, 974
HpyCH4IV	ACGT	3 cut(s)	105, 477, 1156
HpyCH4V	TGCA	4 cut(s)	197, 541, 964, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 203, 1007
HpyF3I	CTNAG	9 cut(s)	171, 240, 420, 528, 552, 627, 759, 948, 1092
HpySE526I	ACGT	3 cut(s)	105, 477, 1156
Hsp92II	CATG	4 cut(s)	608, 997, 1102, 1245
Kzo9I	GATC	5 cut(s)	43, 457, 572, 616, 658
LmnI	GCTCC	2 cut(s)	223, 1243
Lsp1109I	GCAGC	6 cut(s)	77, 80, 209, 400, 451, 988
LweI	GCATC	4 cut(s)	388, 951, 973, 1013
MaeI	CTAG	4 cut(s)	179, 687, 815, 944
MaeII	ACGT	3 cut(s)	105, 477, 1156
MaeIII	GTNAC	4 cut(s)	158, 235, 376, 781
MalI	GATC	5 cut(s)	45, 459, 574, 618, 660
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	5 cut(s)	43, 457, 572, 616, 658
MboII	GAAGA	8 cut(s)	378, 382, 577, 688, 702, 755, 1180, 1200
MhlI	GDGCHC	2 cut(s)	88, 172
MluCI	AATT	2 cut(s)	654, 1067
MlyI	GAGTC	3 cut(s)	132, 625, 1036
MmeI	TCCRAC	1 cut(s)	890
Mph1103I	ATGCAT	2 cut(s)	543, 966
MseI	TTAA	3 cut(s)	141, 897, 977
MspA1I	CMGCKG	1 cut(s)	1010
MwoI	GCNNNNNNNGC	3 cut(s)	194, 203, 1007
NdeII	GATC	5 cut(s)	43, 457, 572, 616, 658
NlaIII	CATG	4 cut(s)	608, 997, 1102, 1245
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	2 cut(s)	376, 781
NsiI	ATGCAT	2 cut(s)	543, 966
NspV	TTCGAA	2 cut(s)	734, 1178
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PfeI	GAWTC	6 cut(s)	76, 110, 223, 811, 841, 1088
PflMI	CCANNNNNTGG	1 cut(s)	922
PkrI	GCNGC	8 cut(s)	67, 70, 199, 202, 205, 415, 466, 1003
PleI	GAGTC	3 cut(s)	131, 625, 1036
PpsI	GAGTC	3 cut(s)	131, 625, 1036
Ppu21I	YACGTR	1 cut(s)	1157
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	11
PsrI	GAACNNNNNNTAC	2 cut(s)	249, 281
PstNI	CAGNNNCTG	1 cut(s)	922
RsaI	GTAC	3 cut(s)	491, 740, 854
RsaNI	GTAC	3 cut(s)	490, 739, 853
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	141, 897, 977
SatI	GCNGC	8 cut(s)	66, 69, 198, 201, 204, 414, 465, 1002
Sau3AI	GATC	5 cut(s)	43, 457, 572, 616, 658
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	3 cut(s)	132, 625, 1036
SduI	GDGCHC	2 cut(s)	88, 172
SfaNI	GCATC	4 cut(s)	388, 951, 973, 1013
SfcI	CTRYAG	1 cut(s)	698
SfuI	TTCGAA	2 cut(s)	734, 1178
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	2 cut(s)	654, 1067
SsiI	CCGC	6 cut(s)	145, 201, 204, 263, 1010, 1139
SspMI	CTAG	4 cut(s)	179, 687, 815, 944
TaaI	ACNGT	5 cut(s)	646, 682, 862, 873, 974
TaiI	ACGT	3 cut(s)	108, 480, 1159
TaqI	TCGA	9 cut(s)	51, 108, 126, 312, 403, 444, 734, 1133, 1178
TasI	AATT	2 cut(s)	654, 1067
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	203, 206
TfiI	GAWTC	6 cut(s)	76, 110, 223, 811, 841, 1088
Tru1I	TTAA	3 cut(s)	141, 897, 977
Tru9I	TTAA	3 cut(s)	141, 897, 977
TscAI	CASTG	2 cut(s)	649, 1068
TseFI	GTSAC	2 cut(s)	376, 781
TseI	GCWGC	6 cut(s)	65, 68, 197, 413, 464, 1001
Tsp45I	GTSAC	2 cut(s)	376, 781
TspDTI	ATGAA	3 cut(s)	11, 593, 1114
TspRI	CASTG	2 cut(s)	649, 1068
Van91I	CCANNNNNTGG	1 cut(s)	922
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	1067
XmiI	GTMKAC	2 cut(s)	444, 1014
XspI	CTAG	4 cut(s)	179, 687, 815, 944
Zsp2I	ATGCAT	2 cut(s)	543, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.