Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005966

Physical Location & Seq

Genomic Coordinates Reverse (-)

1859279 .. 1861703

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGCGACGAGAGCAAACGTACCTGAACAAGTCAGAGGTGCTCCTCTCGTTGATGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAGTCGGCGTGCCCTCGGTGACATCGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAGGCTCAACCTCCGATTAATCGACCCATTACTCGAAGTTTCCGTGCCCAGTTATTAGCGAATGCCCAACTCGAAAGAAAGCCAATCAATGGAGACAACAAGGTTCCAGCTCTTGGTCCAAAGAGACAACCTCTTGCTGCAAGAAACCCAGAAGCTCAAAGGGCGGTTCAGAAGAAGAATCTAGTGGTTAAGCAACAGACGAAGCCTGTTGAAGTGATCGAGACGAAGAAGGAGGTGACTAAAAAGGAAGTAGCGATGTCACCTAAGAATAAGAAAGTGACGTACTCGTCTGTACTTAGTGCTCGGAGCAAAGCTGCTTGTGGTATAGTCAACAAACCAAAGATTATCGATATTGATGAATCTGACAAAGATAACCATTTGGCTGCGGTGGAGTATGTTGATGATATGTACTCGTTCTATAAAGAAGTTGAGAAGGAGAGTCAGCCTAAGATGTACATGCACATTCAGACTGAAATGAATGAGAAGATGAGAGCGATCTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCTCAACCTTGAAACTCTGTACCTCACCGTCAACATCATTGATCGATTCCTCTCTGTGAAAGCTGTCCCTAAAAGAGAGTTACAGCTAGTGGGAATCAGTGCCTTGCTTATTGCTTCCAAATATGAAGAAATCTGGCCACCTCAGGTTAACGATCTGGTGTATGTCACGGACAATGCTTACAGTAGCAGACAGATTCTGGTGATGGAGAAGGCAATTCTTGGAAACCTCGAATGGTATTTGACAGTCCCGACTCAATACGTCTTCCTTGTCCGCTTCATCAAAGCTTCGATGTCTGATCCAGAAATGGAGAATATGGTTCACTTCCTTGCTGAATTGGGGATGATGCATTACGACACCTTGACGTTCTGTCCCTCCATGCTTGCTGCTTCAGCTGTTTACACGGCAAGATGCTCATTGAACAAGTCCCCTGCTTGGACTGATACATTGCAGTTCCACACCGGCTACACAGAGTCTGAGATTATGGACTGCTCAAAGCTTTTAGCTTTTCTTCACTCGAGATGCGGTGAGAGCAGGCTACGTGCAGTGTACAAGAAGTACTCGAAGGCAGAGAATGGAGGTGTTGCTATGGTTTCTCCGGCCAAGTCTCTCTTGAGTGCTGCTGCTGATTGGAAGAAGCCTGTTTCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

445

Amino Acids

49.85

Weight (kDa)

9.32

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	185 - 310	7e-49	Cyclin, N-terminal domain
Cyclin_C	PF02984	312 - 428	3.8e-37	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT3G11520 AT3G11520 AT4G37490 AT5G06150 AT5G06150
fragaria_vesca	FvH4_2g04990 FvH4_2g04990
malus_domestica	MD12G1093900.v1.1
pyrus_communis	pycom12g07970
rosa_chinensis	RchiOBHm_Chr6g0254751
rosa_laevigata	RLG00000014891
rosa_multiflora	Rmu_sc0007716.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210550
rosa_samantha	Rh6AG071900 Rh6BG064000 Rh6CG063400 Rh6DG060500
rosa_wichuraiana	Rw6G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	436
AccB7I	CCANNNNNTGG	2 cut(s)	239, 263
AciI	CCGC	4 cut(s)	314, 536, 958, 1209
AclWI	GGATC	1 cut(s)	977
AcoI	YGGCCR	2 cut(s)	821, 1284
AcuI	CTGAAG	1 cut(s)	1059
AfaI	GTAC	8 cut(s)	21, 434, 444, 560, 605, 707, 1235, 1244
AfiI	CCNNNNNNNGG	3 cut(s)	239, 263, 1119
AgsI	TTSAA	5 cut(s)	61, 143, 362, 698, 1105
AhdI	GACNNNNNGTC	1 cut(s)	1053
Alw21I	GWGCWC	3 cut(s)	43, 454, 690
Alw26I	GTCTC	4 cut(s)	237, 268, 365, 1296
AlwI	GGATC	1 cut(s)	977
AlwNI	CAGNNNCTG	2 cut(s)	883, 1160
Ama87I	CYCGRG	1 cut(s)	1201
AoxI	GGCC	2 cut(s)	821, 1284
ApeKI	GCWGC	6 cut(s)	287, 464, 533, 1070, 1304, 1307
AseI	ATTAAT	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	6 cut(s)	119, 397, 402, 703, 898, 1223
AvaI	CYCGRG	1 cut(s)	1201
AvaII	GGWCC	1 cut(s)	266
AxyI	CCTNAGG	1 cut(s)	828
BaeGI	GKGCMC	2 cut(s)	103, 199
BalI	TGGCCA	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	690
BbsI	GAAGAC	1 cut(s)	940
Bbv12I	GWGCWC	3 cut(s)	43, 454, 690
BbvI	GCAGC	6 cut(s)	274, 451, 520, 1057, 1291, 1294
BccI	CCATC	2 cut(s)	47, 883
BceAI	ACGGC	1 cut(s)	1104
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	4 cut(s)	237, 268, 365, 1296
BfaI	CTAG	3 cut(s)	332, 665, 773
BisI	GCNGC	6 cut(s)	288, 465, 534, 1071, 1305, 1308
BlsI	GCNGC	6 cut(s)	289, 466, 535, 1072, 1306, 1309
BmcAI	AGTACT	1 cut(s)	1244
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	266
BmeRI	GACNNNNNGTC	1 cut(s)	1053
BmeT110I	CYCGRG	1 cut(s)	1201
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	3 cut(s)	1020, 1085, 1196
BmuI	ACTGGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	940
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpuEI	CTTGAG	1 cut(s)	1318
BpuMI	CCSGG	1 cut(s)	135
Bsa29I	ATCGAT	2 cut(s)	498, 730
BsaAI	YACGTR	1 cut(s)	1226
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 263, 1119
Bse118I	RCCGGY	1 cut(s)	1145
Bse1I	ACTGG	1 cut(s)	199
Bse21I	CCTNAGG	1 cut(s)	828
Bse3DI	GCAATG	1 cut(s)	1130
BseCI	ATCGAT	2 cut(s)	498, 730
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	1032
BseLI	CCNNNNNNNGG	3 cut(s)	239, 263, 1119
BseMI	GCAATG	1 cut(s)	1130
BseMII	CTCAG	2 cut(s)	842, 1152
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	2 cut(s)	103, 199
BseXI	GCAGC	6 cut(s)	274, 451, 520, 1057, 1291, 1294
BsgI	GTGCAG	1 cut(s)	1248
BshFI	GGCC	2 cut(s)	823, 1286
BshVI	ATCGAT	2 cut(s)	498, 730
BsiHKAI	GWGCWC	3 cut(s)	43, 454, 690
BsiHKCI	CYCGRG	1 cut(s)	1201
BsiSI	CCGG	3 cut(s)	135, 1146, 1283
BslFI	GGGAC	4 cut(s)	737, 917, 1041, 1096
BslI	CCNNNNNNNGG	3 cut(s)	239, 263, 1119
BsmAI	GTCTC	4 cut(s)	237, 268, 365, 1296
BsmBI	CGTCTC	1 cut(s)	365
BsmFI	GGGAC	4 cut(s)	737, 917, 1041, 1096
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	823, 1286
BsoBI	CYCGRG	1 cut(s)	1201
Bsp1286I	GDGCHC	5 cut(s)	43, 103, 199, 454, 690
Bsp1407I	TGTACA	2 cut(s)	603, 1233
Bsp143I	GATC	5 cut(s)	366, 645, 727, 838, 982
BspACI	CCGC	4 cut(s)	314, 536, 958, 1209
BspANI	GGCC	2 cut(s)	823, 1286
BspCNI	CTCAG	2 cut(s)	841, 1153
BspDI	ATCGAT	2 cut(s)	498, 730
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	977
BsrDI	GCAATG	1 cut(s)	1130
BsrFI	RCCGGY	1 cut(s)	1145
BsrGI	TGTACA	2 cut(s)	603, 1233
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	1145
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	5 cut(s)	366, 645, 727, 838, 982
Bst4CI	ACNGT	4 cut(s)	80, 715, 869, 931
Bst6I	CTCTTC	1 cut(s)	83
BstAUI	TGTACA	2 cut(s)	603, 1233
BstBAI	YACGTR	1 cut(s)	1226
BstC8I	GCNNGC	3 cut(s)	99, 1068, 1220
BstDEI	CTNAG	6 cut(s)	414, 446, 597, 828, 1161, 1335
BstF5I	GGATG	1 cut(s)	1032
BstKTI	GATC	5 cut(s)	369, 648, 730, 841, 985
BstMAI	GTCTC	4 cut(s)	237, 268, 365, 1296
BstMBI	GATC	5 cut(s)	366, 645, 727, 838, 982
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 311, 1076, 1215
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	133
BstSLI	GKGCMC	2 cut(s)	103, 199
BstV1I	GCAGC	6 cut(s)	274, 451, 520, 1057, 1291, 1294
BstV2I	GAAGAC	1 cut(s)	940
Bsu15I	ATCGAT	2 cut(s)	498, 730
Bsu36I	CCTNAGG	1 cut(s)	828
BsuRI	GGCC	2 cut(s)	823, 1286
BsuTUI	ATCGAT	2 cut(s)	498, 730
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	1032
BtsI	GCAGTG	1 cut(s)	1236
BtsIMutI	CAGTG	2 cut(s)	790, 1236
Cac8I	GCNNGC	3 cut(s)	99, 1068, 1220
CaiI	CAGNNNCTG	2 cut(s)	883, 1160
Cfr10I	RCCGGY	1 cut(s)	1145
Cfr13I	GGNCC	1 cut(s)	266
ClaI	ATCGAT	2 cut(s)	498, 730
Csp6I	GTAC	8 cut(s)	20, 433, 443, 559, 604, 706, 1234, 1243
CviAII	CATG	2 cut(s)	607, 1063
CviQI	GTAC	8 cut(s)	20, 433, 443, 559, 604, 706, 1234, 1243
DdeI	CTNAG	6 cut(s)	414, 446, 597, 828, 1161, 1335
DpnI	GATC	5 cut(s)	368, 647, 729, 840, 984
DpnII	GATC	5 cut(s)	366, 645, 727, 838, 982
DrdI	GACNNNNNNGTC	1 cut(s)	436
DriI	GACNNNNNGTC	1 cut(s)	1053
DseDI	GACNNNNNNGTC	1 cut(s)	436
EaeI	YGGCCR	2 cut(s)	821, 1284
Eam1104I	CTCTTC	1 cut(s)	83
Eam1105I	GACNNNNNGTC	1 cut(s)	1053
EarI	CTCTTC	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	688
Eco24I	GRGCYC	1 cut(s)	690
Eco47I	GGWCC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	1059
Eco81I	CCTNAGG	1 cut(s)	828
Eco88I	CYCGRG	1 cut(s)	1201
EcoICRI	GAGCTC	1 cut(s)	688
EcoT22I	ATGCAT	1 cut(s)	1035
EcoT38I	GRGCYC	1 cut(s)	690
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	2 cut(s)	610, 1066
FalI	AAGNNNNNCTT	2 cut(s)	1280, 1312
FaqI	GGGAC	4 cut(s)	737, 917, 1041, 1096
FatI	CATG	2 cut(s)	606, 1062
Fnu4HI	GCNGC	6 cut(s)	288, 465, 534, 1071, 1305, 1308
FokI	GGATG	1 cut(s)	1039
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	6 cut(s)	288, 465, 534, 1071, 1305, 1308
FspBI	CTAG	3 cut(s)	332, 665, 773
GluI	GCNGC	6 cut(s)	288, 465, 534, 1071, 1305, 1308
HaeIII	GGCC	2 cut(s)	823, 1286
HapII	CCGG	3 cut(s)	135, 1146, 1283
Hin1II	CATG	2 cut(s)	610, 1066
HincII	GTYRAC	3 cut(s)	481, 718, 835
HindII	GTYRAC	3 cut(s)	481, 718, 835
HindIII	AAGCTT	2 cut(s)	969, 1181
HpaI	GTTAAC	1 cut(s)	835
HpaII	CCGG	3 cut(s)	135, 1146, 1283
HphI	GGTGA	6 cut(s)	119, 397, 402, 703, 898, 1223
Hpy166II	GTNNAC	7 cut(s)	481, 673, 718, 835, 1006, 1084, 1234
Hpy188III	TCNNGA	6 cut(s)	370, 649, 934, 986, 1203, 1297
Hpy8I	GTNNAC	7 cut(s)	481, 673, 718, 835, 1006, 1084, 1234
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	373, 577, 889, 1243
HpyCH4III	ACNGT	4 cut(s)	80, 715, 869, 931
HpyCH4IV	ACGT	5 cut(s)	18, 431, 945, 1049, 1225
HpyCH4V	TGCA	5 cut(s)	290, 610, 1033, 1135, 1229
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 311, 1076, 1215
HpyF3I	CTNAG	6 cut(s)	414, 446, 597, 828, 1161, 1335
HpySE526I	ACGT	5 cut(s)	18, 431, 945, 1049, 1225
Hsp92II	CATG	2 cut(s)	610, 1066
KspAI	GTTAAC	1 cut(s)	835
Kzo9I	GATC	5 cut(s)	366, 645, 727, 838, 982
LmnI	GCTCC	2 cut(s)	46, 456
Lsp1109I	GCAGC	6 cut(s)	274, 451, 520, 1057, 1291, 1294
LweI	GCATC	3 cut(s)	1020, 1085, 1196
MaeI	CTAG	3 cut(s)	332, 665, 773
MaeII	ACGT	5 cut(s)	18, 431, 945, 1049, 1225
MaeIII	GTNAC	7 cut(s)	107, 385, 408, 427, 660, 765, 850
MalI	GATC	5 cut(s)	368, 647, 729, 840, 984
MboI	GATC	5 cut(s)	366, 645, 727, 838, 982
MhlI	GDGCHC	5 cut(s)	43, 103, 199, 454, 690
MlsI	TGGCCA	1 cut(s)	823
MluCI	AATT	2 cut(s)	900, 1019
MluNI	TGGCCA	1 cut(s)	823
MlyI	GAGTC	4 cut(s)	100, 598, 931, 1166
Mox20I	TGGCCA	1 cut(s)	823
Mph1103I	ATGCAT	1 cut(s)	1035
MscI	TGGCCA	1 cut(s)	823
MseI	TTAA	3 cut(s)	168, 339, 834
Msp20I	TGGCCA	1 cut(s)	823
MspA1I	CMGCKG	1 cut(s)	1079
MspI	CCGG	3 cut(s)	135, 1146, 1283
MspR9I	CCNGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	217
MwoI	GCNNNNNNNGC	4 cut(s)	11, 311, 1076, 1215
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	366, 645, 727, 838, 982
NlaIII	CATG	2 cut(s)	610, 1066
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	5 cut(s)	107, 385, 408, 427, 850
NsiI	ATGCAT	1 cut(s)	1035
NspI	RCATGY	1 cut(s)	610
PaeR7I	CTCGAG	1 cut(s)	1201
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	6 cut(s)	64, 328, 509, 732, 780, 880
PflMI	CCANNNNNTGG	2 cut(s)	239, 263
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	6 cut(s)	289, 466, 535, 1072, 1306, 1309
PleI	GAGTC	4 cut(s)	99, 597, 931, 1165
PpsI	GAGTC	4 cut(s)	99, 597, 931, 1165
Ppu21I	YACGTR	1 cut(s)	1226
PshBI	ATTAAT	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	690
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	266
PstNI	CAGNNNCTG	2 cut(s)	883, 1160
PvuII	CAGCTG	1 cut(s)	1079
RsaI	GTAC	8 cut(s)	21, 434, 444, 560, 605, 707, 1235, 1244
RsaNI	GTAC	8 cut(s)	20, 433, 443, 559, 604, 706, 1234, 1243
SacI	GAGCTC	1 cut(s)	690
SaqAI	TTAA	3 cut(s)	168, 339, 834
SatI	GCNGC	6 cut(s)	288, 465, 534, 1071, 1305, 1308
Sau3AI	GATC	5 cut(s)	366, 645, 727, 838, 982
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	1244
SchI	GAGTC	4 cut(s)	100, 598, 931, 1166
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	5 cut(s)	43, 103, 199, 454, 690
SfaNI	GCATC	3 cut(s)	1020, 1085, 1196
Sfr274I	CTCGAG	1 cut(s)	1201
SinI	GGWCC	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	1201
SmlI	CTYRAG	2 cut(s)	1201, 1297
SmoI	CTYRAG	2 cut(s)	1201, 1297
Sse9I	AATT	2 cut(s)	900, 1019
SsiI	CCGC	4 cut(s)	314, 536, 958, 1209
SspMI	CTAG	3 cut(s)	332, 665, 773
SstI	GAGCTC	1 cut(s)	690
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	4 cut(s)	80, 715, 869, 931
TaiI	ACGT	5 cut(s)	21, 434, 948, 1052, 1228
TasI	AATT	2 cut(s)	900, 1019
TatI	WGTACW	5 cut(s)	442, 558, 603, 1233, 1242
TfiI	GAWTC	6 cut(s)	64, 328, 509, 732, 780, 880
Tru1I	TTAA	3 cut(s)	168, 339, 834
Tru9I	TTAA	3 cut(s)	168, 339, 834
TscAI	CASTG	2 cut(s)	790, 1236
TseFI	GTSAC	5 cut(s)	107, 385, 408, 427, 850
TseI	GCWGC	6 cut(s)	287, 464, 533, 1070, 1304, 1307
Tsp45I	GTSAC	5 cut(s)	107, 385, 408, 427, 850
TspDTI	ATGAA	4 cut(s)	522, 641, 825, 952
TspGWI	ACGGA	2 cut(s)	182, 869
TspRI	CASTG	2 cut(s)	790, 1236
Van91I	CCANNNNNTGG	2 cut(s)	239, 263
VpaK11BI	GGWCC	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	168
XceI	RCATGY	1 cut(s)	610
XhoI	CTCGAG	1 cut(s)	1201
XspI	CTAG	3 cut(s)	332, 665, 773
ZrmI	AGTACT	1 cut(s)	1244
Zsp2I	ATGCAT	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.