Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005966

Physical Location & Seq

Genomic Coordinates Forward (+)

4043924 .. 4046907

Gene Structure 2984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGCTTCTAGAGTTGCTGATCAACAACAAGTGAGAGGTATGGCAGTGGTCGGAGCAGGAGTTAAGCCACAGAAGAAGGCTGTGGTCGATGGGAGAAACCGAAAACCACTGGGTGAGATTGGTAATCAGCAAGCTGTTAGGGGAATTGAGGTCAAGCCTAATCGCCCCATAACAAGGAACTTCCGGGCTCAATTACTGGCTAATGCACAGGCTGCAGCAGCTAATGAGAACAACAAGAAGCAAGTTTGTGTGAATGTTAATGGAGGTGCTGCTGTTCTTGATGAACTTGTGCCAGTTAGGAGGGCTGAGGCACCCAAGCCAGTGCAGAAGAAACTTGTTATTGTCAAGCCAAAACCCAAGGAAGTAATTGAAATCAGCCCGGACAAAGAGGAAGGCTTGATTGAAAAAGCCAAGCCTGAGAAGAAGAAAGAAGGAGCTTCAAAGAAGAAAGCAGCACCAACTCTCACTTCAGTGCTTACTGCTAGAAGCAAGGCTGCTTGTGGTTTGACTAATAAACCAAAGGAAGTGATTGTTGATATTGATGCCAAAGATGTTGGTAATGACTTGGCTGCTGTTGAATATGTGGAGGACATGTACAAGTTCTATAAGCTTGTTGAGCATGAGAACCGCCCACATGACTATATGGACTCACAGCCTGAGATCAACGAGAACATGAGAGCAATTTTGATGGACTGGCTGGTTGTTGTTCACAGAAAATTCGAGCTTTCTCCAGAGGCATTCTACCTAACTGTGAACATAATTGATCGGTTCCTTTCGGTCAAGACTGTGCCAAGAAGAGATTTACAATTAGTTGGCATCAGTGCCATGCTAATTGCCTCAAAGTATGAAGAGATCTGGCCCCCTCAGGTGGATGACTTTGTTAGCCTTTCGGACAATGCTTACAGTAATGTGCAGATCTTGGTAATGGAGAAAATGATACTGGGCAAGTTGGAGTGGACCTTGACTGTTCCTACACTCTATGTGTTCCTGGTCCGGTTCATTAAAGCTGCAATTTCAGATGAACAAATGGAAAACTTGGTCTACTATCTAGCTGAATTGGGTATGATGCATTATGGCATACTTATGTACTGCCCTTCTATGATTGCTGCATCTGCAGTCTATGCTGCTAAATGCACTCTGAACAAGAGCCCTGCTTGGTGTGACACGCTCAAGCTTCACACTGGTTTCTCTGAAGAGCAACTAATTGATTGTTCCAAAGTGTTGGTGAGCTTGCAAGCAAAGGCTGCGAGAAACAAGCTTCAGGGTGTGTACAAGAAGTACTCGAGTTCTGAGAAAAGTGCTGTGGCTTTGCTGACTCCTGCCAAACTGCTTTTGCCACCAGCCACAGCTTCAGGAGGATCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

456

Amino Acids

50.3

Weight (kDa)

9.16

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	197 - 321	9.8e-49	Cyclin, N-terminal domain
Cyclin_C	PF02984	324 - 440	4.3e-36	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT3G11520 AT3G11520 AT4G37490 AT5G06150 AT5G06150
fragaria_vesca	FvH4_2g04990 FvH4_2g04990
malus_domestica	MD12G1093900.v1.1
pyrus_communis	pycom12g07970
rosa_chinensis	RchiOBHm_Chr6g0254751
rosa_laevigata	RLG00000014891
rosa_multiflora	Rmu_sc0007716.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210550
rosa_samantha	Rh6AG071900 Rh6BG064000 Rh6CG063400 Rh6DG060500
rosa_wichuraiana	Rw6G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	1041
AciI	CCGC	1 cut(s)	628
AclWI	GGATC	1 cut(s)	1366
AcsI	RAATTY	1 cut(s)	716
AcuI	CTGAAG	4 cut(s)	453, 1212, 1244, 1335
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	4 cut(s)	596, 1088, 1271, 1280
AfiI	CCNNNNNNNGG	2 cut(s)	174, 868
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	4 cut(s)	371, 404, 441, 578
AjnI	CCWGG	1 cut(s)	987
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AleI	CACNNNNGTG	1 cut(s)	470
AlwI	GGATC	1 cut(s)	1366
Ama87I	CYCGRG	1 cut(s)	1282
AoxI	GGCC	1 cut(s)	857
ApoI	RAATTY	1 cut(s)	716
AspS9I	GGNCC	3 cut(s)	858, 957, 991
AsuC2I	CCSGG	2 cut(s)	185, 380
AsuHPI	GGTGA	2 cut(s)	125, 1237
AvaI	CYCGRG	1 cut(s)	1282
AvaII	GGWCC	2 cut(s)	957, 991
AxyI	CCTNAGG	1 cut(s)	864
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	2 cut(s)	190, 1151
BbvCI	CCTCAGC	1 cut(s)	306
BccI	CCATC	2 cut(s)	83, 682
BciT130I	CCWGG	1 cut(s)	989
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	185, 380
BfaI	CTAG	3 cut(s)	9, 483, 1049
BfmI	CTRYAG	2 cut(s)	213, 1113
BglII	AGATCT	2 cut(s)	852, 915
BmcAI	AGTACT	1 cut(s)	1280
Bme1390I	CCNGG	3 cut(s)	185, 380, 989
Bme18I	GGWCC	2 cut(s)	957, 991
BmeT110I	CYCGRG	1 cut(s)	1282
BmgT120I	GGNCC	3 cut(s)	858, 957, 991
BmiI	GGNNCC	3 cut(s)	312, 770, 860
BmrFI	CCNGG	3 cut(s)	185, 380, 989
BmrI	ACTGGG	2 cut(s)	119, 950
BmsI	GCATC	4 cut(s)	532, 825, 1056, 1118
BmuI	ACTGGG	2 cut(s)	119, 950
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	1154
BpuMI	CCSGG	2 cut(s)	185, 380
BsaJI	CCNNGG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	993
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 578, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 868
Bse1I	ACTGG	7 cut(s)	114, 201, 293, 320, 698, 945, 1186
Bse21I	CCTNAGG	1 cut(s)	864
BseBI	CCWGG	1 cut(s)	989
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	877
BseLI	CCNNNNNNNGG	2 cut(s)	174, 868
BseMII	CTCAG	5 cut(s)	297, 408, 648, 878, 1281
BseNI	ACTGG	7 cut(s)	114, 201, 293, 320, 698, 945, 1186
BsgI	GTGCAG	2 cut(s)	344, 932
BshFI	GGCC	1 cut(s)	859
BshNI	GGYRCC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	1282
BsiSI	CCGG	3 cut(s)	184, 380, 994
BslI	CCNNNNNNNGG	2 cut(s)	174, 868
BsmI	GAATGC	1 cut(s)	737
BsnI	GGCC	1 cut(s)	859
BsoBI	CYCGRG	1 cut(s)	1282
Bsp1286I	GDGCHC	2 cut(s)	190, 1151
Bsp1407I	TGTACA	2 cut(s)	594, 1269
Bsp143I	GATC	6 cut(s)	19, 660, 763, 852, 915, 1358
BspACI	CCGC	1 cut(s)	628
BspANI	GGCC	1 cut(s)	859
BspCNI	CTCAG	5 cut(s)	298, 409, 649, 877, 1282
BspLI	GGNNCC	3 cut(s)	312, 770, 860
BspMAI	CTGCAG	2 cut(s)	217, 1117
BspPI	GGATC	1 cut(s)	1366
BspQI	GCTCTTC	1 cut(s)	1188
BspT107I	GGYRCC	1 cut(s)	310
BsrGI	TGTACA	2 cut(s)	594, 1269
BsrI	ACTGG	7 cut(s)	114, 201, 293, 320, 698, 945, 1186
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	6 cut(s)	19, 660, 763, 852, 915, 1358
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	989
Bst4CI	ACNGT	4 cut(s)	751, 787, 905, 967
Bst6I	CTCTTC	3 cut(s)	790, 843, 1188
BstAPI	GCANNNNNTGC	3 cut(s)	212, 1121, 1244
BstAUI	TGTACA	2 cut(s)	594, 1269
BstC8I	GCNNGC	3 cut(s)	132, 1232, 1236
BstDEI	CTNAG	5 cut(s)	306, 417, 657, 864, 1290
BstF5I	GGATG	1 cut(s)	877
BstKTI	GATC	6 cut(s)	22, 663, 766, 855, 918, 1361
BstMBI	GATC	6 cut(s)	19, 660, 763, 852, 915, 1358
BstMWI	GCNNNNNNNGC	6 cut(s)	212, 218, 616, 1112, 1121, 1244
BstNI	CCWGG	1 cut(s)	989
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	3 cut(s)	183, 378, 987
BstSFI	CTRYAG	2 cut(s)	213, 1113
BstX2I	RGATCY	3 cut(s)	852, 915, 1358
BstXI	CCANNNNNNTGG	1 cut(s)	1222
BstYI	RGATCY	3 cut(s)	852, 915, 1358
Bsu36I	CCTNAGG	1 cut(s)	864
BsuRI	GGCC	1 cut(s)	859
BtsCI	GGATG	1 cut(s)	877
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	6 cut(s)	51, 107, 327, 477, 826, 1179
Cac8I	GCNNGC	3 cut(s)	132, 1232, 1236
Cfr13I	GGNCC	3 cut(s)	858, 957, 991
Csp6I	GTAC	4 cut(s)	595, 1087, 1270, 1279
CviAII	CATG	5 cut(s)	592, 620, 635, 673, 826
CviQI	GTAC	4 cut(s)	595, 1087, 1270, 1279
DdeI	CTNAG	5 cut(s)	306, 417, 657, 864, 1290
DpnI	GATC	6 cut(s)	21, 662, 765, 854, 917, 1360
DpnII	GATC	6 cut(s)	19, 660, 763, 852, 915, 1358
DraIII	CACNNNGTG	1 cut(s)	113
Eam1104I	CTCTTC	3 cut(s)	790, 843, 1188
EarI	CTCTTC	3 cut(s)	790, 843, 1188
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	2 cut(s)	190, 1151
Eco47I	GGWCC	2 cut(s)	957, 991
Eco57I	CTGAAG	4 cut(s)	453, 1212, 1244, 1335
Eco81I	CCTNAGG	1 cut(s)	864
Eco88I	CYCGRG	1 cut(s)	1282
EcoRII	CCWGG	1 cut(s)	987
EcoT14I	CCWWGG	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	1071
EcoT38I	GRGCYC	2 cut(s)	190, 1151
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	5 cut(s)	595, 623, 638, 676, 829
FatI	CATG	5 cut(s)	591, 619, 634, 672, 825
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	1041
FokI	GGATG	1 cut(s)	884
FriOI	GRGCYC	2 cut(s)	190, 1151
FspBI	CTAG	3 cut(s)	9, 483, 1049
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	1 cut(s)	859
HapII	CCGG	3 cut(s)	184, 380, 994
Hin1II	CATG	5 cut(s)	595, 623, 638, 676, 829
HindIII	AAGCTT	3 cut(s)	608, 1172, 1256
HinfI	GANTC	2 cut(s)	647, 1315
HpaII	CCGG	3 cut(s)	184, 380, 994
HphI	GGTGA	2 cut(s)	125, 1237
Hpy166II	GTNNAC	5 cut(s)	709, 754, 957, 1042, 1270
Hpy188I	TCNGA	6 cut(s)	53, 892, 1018, 1140, 1192, 1291
Hpy188III	TCNNGA	5 cut(s)	9, 278, 731, 781, 1353
Hpy8I	GTNNAC	5 cut(s)	709, 754, 957, 1042, 1270
HpyAV	CCTTC	4 cut(s)	70, 386, 425, 1104
HpyCH4III	ACNGT	4 cut(s)	751, 787, 905, 967
HpyF10VI	GCNNNNNNNGC	6 cut(s)	212, 218, 616, 1112, 1121, 1244
HpyF3I	CTNAG	5 cut(s)	306, 417, 657, 864, 1290
Hsp92II	CATG	5 cut(s)	595, 623, 638, 676, 829
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	6 cut(s)	19, 660, 763, 852, 915, 1358
LguI	GCTCTTC	1 cut(s)	1188
LmnI	GCTCC	2 cut(s)	53, 434
LweI	GCATC	4 cut(s)	532, 825, 1056, 1118
MaeI	CTAG	3 cut(s)	9, 483, 1049
MaeIII	GTNAC	1 cut(s)	1160
MalI	GATC	6 cut(s)	21, 662, 765, 854, 917, 1360
MboI	GATC	6 cut(s)	19, 660, 763, 852, 915, 1358
MboII	GAAGA	9 cut(s)	85, 340, 433, 436, 457, 807, 860, 1205, 1353
MflI	RGATCY	3 cut(s)	852, 915, 1358
MhlI	GDGCHC	2 cut(s)	190, 1151
MlyI	GAGTC	2 cut(s)	641, 1309
MmeI	TCCRAC	2 cut(s)	31, 930
Mph1103I	ATGCAT	1 cut(s)	1071
MseI	TTAA	3 cut(s)	63, 258, 1002
MslI	CAYNNNNRTG	2 cut(s)	470, 1082
MspI	CCGG	3 cut(s)	184, 380, 994
MspR9I	CCNGG	3 cut(s)	185, 380, 989
Mva1269I	GAATGC	1 cut(s)	737
MvaI	CCWGG	1 cut(s)	989
MwoI	GCNNNNNNNGC	6 cut(s)	212, 218, 616, 1112, 1121, 1244
NciI	CCSGG	2 cut(s)	185, 380
NdeII	GATC	6 cut(s)	19, 660, 763, 852, 915, 1358
NlaIII	CATG	5 cut(s)	595, 623, 638, 676, 829
NlaIV	GGNNCC	3 cut(s)	312, 770, 860
NmuCI	GTSAC	1 cut(s)	1160
NsiI	ATGCAT	1 cut(s)	1071
NspI	RCATGY	1 cut(s)	595
OliI	CACNNNNGTG	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	1282
PciI	ACATGT	1 cut(s)	591
PciSI	GCTCTTC	1 cut(s)	1188
PctI	GAATGC	1 cut(s)	737
PleI	GAGTC	2 cut(s)	641, 1309
PpsI	GAGTC	2 cut(s)	641, 1309
PscI	ACATGT	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	987
PspGI	CCWGG	1 cut(s)	987
PspN4I	GGNNCC	3 cut(s)	312, 770, 860
PspPI	GGNCC	3 cut(s)	858, 957, 991
PspXI	VCTCGAGB	1 cut(s)	1282
PstI	CTGCAG	2 cut(s)	217, 1117
PsuI	RGATCY	3 cut(s)	852, 915, 1358
RsaI	GTAC	4 cut(s)	596, 1088, 1271, 1280
RsaNI	GTAC	4 cut(s)	595, 1087, 1270, 1279
RseI	CAYNNNNRTG	2 cut(s)	470, 1082
SapI	GCTCTTC	1 cut(s)	1188
SaqAI	TTAA	3 cut(s)	63, 258, 1002
Sau3AI	GATC	6 cut(s)	19, 660, 763, 852, 915, 1358
Sau96I	GGNCC	3 cut(s)	858, 957, 991
ScaI	AGTACT	1 cut(s)	1280
SchI	GAGTC	2 cut(s)	641, 1309
ScrFI	CCNGG	3 cut(s)	185, 380, 989
SduI	GDGCHC	2 cut(s)	190, 1151
SfaNI	GCATC	4 cut(s)	532, 825, 1056, 1118
SfcI	CTRYAG	2 cut(s)	213, 1113
Sfr274I	CTCGAG	1 cut(s)	1282
SinI	GGWCC	2 cut(s)	957, 991
SlaI	CTCGAG	1 cut(s)	1282
SmiMI	CAYNNNNRTG	2 cut(s)	470, 1082
SmlI	CTYRAG	2 cut(s)	1169, 1282
SmoI	CTYRAG	2 cut(s)	1169, 1282
SsiI	CCGC	1 cut(s)	628
SspMI	CTAG	3 cut(s)	9, 483, 1049
StyD4I	CCNGG	3 cut(s)	183, 378, 987
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	4 cut(s)	751, 787, 905, 967
TaqI	TCGA	3 cut(s)	87, 720, 1283
TaqII	GACCGA	1 cut(s)	766
TatI	WGTACW	4 cut(s)	594, 1086, 1269, 1278
Tru1I	TTAA	3 cut(s)	63, 258, 1002
Tru9I	TTAA	3 cut(s)	63, 258, 1002
TscAI	CASTG	6 cut(s)	51, 114, 327, 477, 826, 1186
TseFI	GTSAC	1 cut(s)	1160
Tsp45I	GTSAC	1 cut(s)	1160
TspDTI	ATGAA	5 cut(s)	297, 861, 988, 1035, 1353
TspRI	CASTG	6 cut(s)	51, 114, 327, 477, 826, 1186
VpaK11BI	GGWCC	2 cut(s)	957, 991
XapI	RAATTY	1 cut(s)	716
XbaI	TCTAGA	1 cut(s)	8
XceI	RCATGY	1 cut(s)	595
XhoI	CTCGAG	1 cut(s)	1282
XmiI	GTMKAC	1 cut(s)	1041
XspI	CTAG	3 cut(s)	9, 483, 1049
ZrmI	AGTACT	1 cut(s)	1280
Zsp2I	ATGCAT	1 cut(s)	1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.