Rh6BG064000

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
9947471 .. 9950831
3361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG064000.1

Sequence Viewer

Length: 1359 bp
ATGGCTTCGAGAGTCGTTGATCAACAACAAGCCAGAGGTATGGCAGTGGCCGGAGTAGGAGTTAAGCCACAGAAGAAGAACGCTGTGGCAGATGGGAGAAACCGAAAACCACTTGGTGAGATTGGCAACCAGCAACTTGTTCGAGGAATTGAGATCAAGCCGAATCGCCCTATAACAAGTGATTGCAGGAACTTCCGGGCTCAATTACTAGCTAATGCACAGGCTGCAGCAGCTAATGAGAACAACAAGAAGCAAGTTTGTGTTAACGTGAATGAACTTGTGGCGGTTAAAAGGGATGAGGCACCCAAGCCAGTGCAGAAGAAAGTAGTTAATATCAAGTTGAAGCCCAAGGAGATAATCGAAATCAGTCCGGAGACAGAGGAAGGCTTGATTGAAAAGGTTAAGCATGAGAAGAAGAAAGAAGGAGCTTCAAAGAAGAAAGCAGCACCAACTCTTACTTCGGTCCTTACTGCTAGAAGCAAGGCTGCTTGTGGTTTGACTAATAAACCAAAGGATGTGATTGTTGATATTGATGCCAAAGATGCTGGTAATGACTTGGCTGCTGTTGAATATGTTGAGGACATGTACAAGTTCTATAAGCTTGTTGAGAATGAGAACCGCCCTCATGACTATATTGACTCACAGCCTGAGATTAACGAAAACATGAGAGCAATTCTGATGGACTGGCTGGTGGTTGTTCACAGCAAGTTCGAGCTTTCTCCGGAGACTTTCTACCTAACCACCAACATAATTGACCGGTTCCTTTCAGTCAAGACTGTGCCTAGGAGAGAGTTGCAATTAGTTGGCATCAGCGCCATGCTGATTGCCTCAAAGTATGAAGAGATCTGGCCCCCTCAGGTCGATGACTTTGTTAGCCTTTCGGACAATGCTTACAGTAATGTGCAGATATTGGTGATGGAGAAAATGATACTGGGTAAGTTGGAGTGGACCTTGACTGTACCTACACTCTATGTGTTCTTGGTCCGGTTCATTAAAGCCGCAATTCCAGATGAACAAATGGAAAACCTGGTCTACTTTCTAGCTGAATTGGGTATGATGCATTATGGCATGCTTATGTACTGCCCTTCAATGGTTGCTGCCTCTGCAGTCTATGCTGCTAAATGCACTCTAAACAAGACTCCTGCTTGGTGTGACACGCTTAAGCTTCACACTGGTTTCTCAGAATCCCAACTAATTGATTGTTCCAAAGTGTTGGTGAGCTTGCATGCTAAGGCTGCAAAAAACAAGCTTCAGGGTGTGTTCAAGAAGTACTTGAGTTCTGAGAGAGGTGCTGTGGCTTTGCTGTCTCCAGCCAAAGCGCTTTTGCCCCCAGCCAAAGCTTCAGGAGGATCTTCATAG
Functional Annotation

Protein Analysis

452

Amino Acids

50.06

Weight (kDa)

9.08

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 194 - 318 3e-48 Cyclin, N-terminal domain
Cyclin_C PF02984 321 - 437 7.3e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 1032
AccIII TCCGGA 2 cut(s) 370, 721
AciI CCGC 3 cut(s) 284, 619, 999
AclWI GGATC 1 cut(s) 1357
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 2 cut(s) 1235, 1326
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 4 cut(s) 587, 960, 1079, 1271
AfeI AGCGCT 1 cut(s) 1320
AfiI CCNNNNNNNGG 1 cut(s) 1090
AflII CTTAAG 1 cut(s) 1160
AflIII ACRYGT 1 cut(s) 582
AgeI ACCGGT 1 cut(s) 756
AgsI TTSAA 6 cut(s) 343, 395, 432, 569, 1089, 1264
AjnI CCWGG 1 cut(s) 1026
AjuI GAANNNNNNNTTGG 2 cut(s) 442, 474
Alw26I GTCTC 3 cut(s) 368, 719, 1311
AlwI GGATC 1 cut(s) 1357
Aor13HI TCCGGA 2 cut(s) 370, 721
Aor51HI AGCGCT 1 cut(s) 1320
AoxI GGCC 2 cut(s) 48, 848
ApeKI GCWGC 9 cut(s) 224, 227, 230, 443, 485, 560, 1097, 1115, 1235
AsiGI ACCGGT 1 cut(s) 756
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 2 cut(s) 815, 1321
AspS9I GGNCC 4 cut(s) 463, 849, 948, 982
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 3 cut(s) 128, 925, 1228
AvaII GGWCC 3 cut(s) 463, 948, 982
AvrII CCTAGG 1 cut(s) 782
AxyI CCTNAGG 1 cut(s) 855
BanI GGYRCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 202
BbvI GCAGC 9 cut(s) 211, 239, 242, 455, 472, 547, 1084, 1102, 1222
BccI CCATC 3 cut(s) 86, 673, 910
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 1 cut(s) 1028
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 3 cut(s) 368, 719, 1311
BfaI CTAG 4 cut(s) 209, 474, 783, 1040
BfmI CTRYAG 2 cut(s) 225, 1104
BfoI RGCGCY 2 cut(s) 816, 1322
BfrI CTTAAG 1 cut(s) 1160
BglII AGATCT 1 cut(s) 843
BlnI CCTAGG 1 cut(s) 782
BmcAI AGTACT 1 cut(s) 1271
Bme1390I CCNGG 2 cut(s) 197, 1028
Bme18I GGWCC 3 cut(s) 463, 948, 982
BmgT120I GGNCC 4 cut(s) 463, 849, 948, 982
BmiI GGNNCC 3 cut(s) 303, 761, 851
BmrFI CCNGG 2 cut(s) 197, 1028
BmrI ACTGGG 1 cut(s) 941
BmsI GCATC 4 cut(s) 523, 532, 816, 1047
BmuI ACTGGG 1 cut(s) 941
BpmI CTGGAG 1 cut(s) 1293
Bpu10I CCTNAGC 1 cut(s) 1230
BpuEI CTTGAG 1 cut(s) 1294
BpuMI CCSGG 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 348, 782
BsaWI WCCGGW 4 cut(s) 370, 721, 756, 984
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 1090
Bse118I RCCGGY 1 cut(s) 756
Bse1I ACTGG 4 cut(s) 311, 689, 936, 1177
Bse21I CCTNAGG 1 cut(s) 855
BseAI TCCGGA 2 cut(s) 370, 721
BseBI CCWGG 1 cut(s) 1028
BseDI CCNNGG 2 cut(s) 348, 782
BseGI GGATG 2 cut(s) 301, 520
BseLI CCNNNNNNNGG 1 cut(s) 1090
BseMII CTCAG 4 cut(s) 639, 869, 1194, 1272
BseNI ACTGG 4 cut(s) 311, 689, 936, 1177
BseXI GCAGC 9 cut(s) 211, 239, 242, 455, 472, 547, 1084, 1102, 1222
BseYI CCCAGC 1 cut(s) 1330
BsgI GTGCAG 2 cut(s) 335, 923
BshFI GGCC 2 cut(s) 50, 850
BshNI GGYRCC 1 cut(s) 301
BshTI ACCGGT 1 cut(s) 756
BsiSI CCGG 6 cut(s) 51, 196, 371, 722, 757, 985
BslI CCNNNNNNNGG 1 cut(s) 1090
BsmAI GTCTC 3 cut(s) 368, 719, 1311
BsnI GGCC 2 cut(s) 50, 850
Bsp1286I GDGCHC 1 cut(s) 202
Bsp13I TCCGGA 2 cut(s) 370, 721
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 4 cut(s) 19, 153, 843, 1349
BspACI CCGC 3 cut(s) 284, 619, 999
BspANI GGCC 2 cut(s) 50, 850
BspCNI CTCAG 4 cut(s) 640, 868, 1193, 1273
BspEI TCCGGA 2 cut(s) 370, 721
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 3 cut(s) 303, 761, 851
BspMAI CTGCAG 2 cut(s) 229, 1108
BspPI GGATC 1 cut(s) 1357
BspT107I GGYRCC 1 cut(s) 301
BspTI CTTAAG 1 cut(s) 1160
BsrFI RCCGGY 1 cut(s) 756
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 4 cut(s) 311, 689, 936, 1177
BssAI RCCGGY 1 cut(s) 756
BssECI CCNNGG 2 cut(s) 348, 782
BssMI GATC 4 cut(s) 19, 153, 843, 1349
BssT1I CCWWGG 2 cut(s) 348, 782
Bst2UI CCWGG 1 cut(s) 1028
Bst4CI ACNGT 3 cut(s) 778, 896, 958
Bst6I CTCTTC 1 cut(s) 834
BstAFI CTTAAG 1 cut(s) 1160
BstAPI GCANNNNNTGC 2 cut(s) 224, 1112
BstAUI TGTACA 1 cut(s) 585
BstC8I GCNNGC 3 cut(s) 1070, 1223, 1227
BstDEI CTNAG 5 cut(s) 648, 855, 1180, 1230, 1281
BstF5I GGATG 2 cut(s) 301, 520
BstH2I RGCGCY 2 cut(s) 816, 1322
BstHHI GCGC 2 cut(s) 815, 1321
BstKTI GATC 4 cut(s) 22, 156, 846, 1352
BstMAI GTCTC 3 cut(s) 368, 719, 1311
BstMBI GATC 4 cut(s) 19, 153, 843, 1349
BstMWI GCNNNNNNNGC 6 cut(s) 224, 230, 542, 1103, 1112, 1235
BstNI CCWGG 1 cut(s) 1028
BstNSI RCATGY 3 cut(s) 586, 1072, 1229
BstSCI CCNGG 2 cut(s) 195, 1026
BstSFI CTRYAG 2 cut(s) 225, 1104
BstV1I GCAGC 9 cut(s) 211, 239, 242, 455, 472, 547, 1084, 1102, 1222
BstX2I RGATCY 2 cut(s) 843, 1349
BstXI CCANNNNNNTGG 2 cut(s) 40, 1213
BstYI RGATCY 2 cut(s) 843, 1349
Bsu36I CCTNAGG 1 cut(s) 855
BsuRI GGCC 2 cut(s) 50, 850
BtsCI GGATG 2 cut(s) 301, 520
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 51, 318, 1170
Cac8I GCNNGC 3 cut(s) 1070, 1223, 1227
CciI TCATGA 1 cut(s) 625
CfoI GCGC 2 cut(s) 815, 1321
Cfr10I RCCGGY 1 cut(s) 756
Cfr13I GGNCC 4 cut(s) 463, 849, 948, 982
CsiI ACCWGGT 1 cut(s) 1026
Csp6I GTAC 4 cut(s) 586, 959, 1078, 1270
CspAI ACCGGT 1 cut(s) 756
CviAII CATG 7 cut(s) 407, 583, 626, 664, 817, 1069, 1226
CviQI GTAC 4 cut(s) 586, 959, 1078, 1270
DdeI CTNAG 5 cut(s) 648, 855, 1180, 1230, 1281
DpnI GATC 4 cut(s) 21, 155, 845, 1351
DpnII GATC 4 cut(s) 19, 153, 843, 1349
DraIII CACNNNGTG 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
Eco130I CCWWGG 2 cut(s) 348, 782
Eco24I GRGCYC 1 cut(s) 202
Eco47I GGWCC 3 cut(s) 463, 948, 982
Eco47III AGCGCT 1 cut(s) 1320
Eco57I CTGAAG 2 cut(s) 1235, 1326
Eco81I CCTNAGG 1 cut(s) 855
EcoRII CCWGG 1 cut(s) 1026
EcoT14I CCWWGG 2 cut(s) 348, 782
EcoT22I ATGCAT 1 cut(s) 1062
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 2 cut(s) 348, 782
FaeI CATG 7 cut(s) 410, 586, 629, 667, 820, 1072, 1229
FalI AAGNNNNNCTT 2 cut(s) 1256, 1288
FatI CATG 7 cut(s) 406, 582, 625, 663, 816, 1068, 1225
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 1 cut(s) 1032
FokI GGATG 2 cut(s) 308, 527
FriOI GRGCYC 1 cut(s) 202
FspBI CTAG 4 cut(s) 209, 474, 783, 1040
GlaI GCGC 2 cut(s) 814, 1320
GsaI CCCAGC 1 cut(s) 1334
GsuI CTGGAG 1 cut(s) 1293
HaeII RGCGCY 2 cut(s) 816, 1322
HaeIII GGCC 2 cut(s) 50, 850
HapII CCGG 6 cut(s) 51, 196, 371, 722, 757, 985
HhaI GCGC 2 cut(s) 815, 1321
Hin1II CATG 7 cut(s) 410, 586, 629, 667, 820, 1072, 1229
Hin6I GCGC 2 cut(s) 813, 1319
HinP1I GCGC 2 cut(s) 813, 1319
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 4 cut(s) 599, 1163, 1247, 1338
HinfI GANTC 5 cut(s) 12, 163, 638, 1138, 1184
HpaI GTTAAC 1 cut(s) 265
HpaII CCGG 6 cut(s) 51, 196, 371, 722, 757, 985
HphI GGTGA 3 cut(s) 128, 925, 1228
Hpy166II GTNNAC 4 cut(s) 265, 700, 948, 1033
Hpy188I TCNGA 4 cut(s) 678, 883, 1183, 1282
Hpy188III TCNNGA 8 cut(s) 9, 371, 626, 722, 772, 1007, 1264, 1344
Hpy8I GTNNAC 4 cut(s) 265, 700, 948, 1033
HpyAV CCTTC 3 cut(s) 377, 416, 1095
HpyCH4III ACNGT 3 cut(s) 778, 896, 958
HpyCH4IV ACGT 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 6 cut(s) 224, 230, 542, 1103, 1112, 1235
HpyF3I CTNAG 5 cut(s) 648, 855, 1180, 1230, 1281
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 7 cut(s) 410, 586, 629, 667, 820, 1072, 1229
HspAI GCGC 2 cut(s) 813, 1319
Kpn2I TCCGGA 2 cut(s) 370, 721
Ksp22I TGATCA 1 cut(s) 19
KspAI GTTAAC 1 cut(s) 265
Kzo9I GATC 4 cut(s) 19, 153, 843, 1349
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 9 cut(s) 211, 239, 242, 455, 472, 547, 1084, 1102, 1222
LweI GCATC 4 cut(s) 523, 532, 816, 1047
MabI ACCWGGT 1 cut(s) 1026
MaeI CTAG 4 cut(s) 209, 474, 783, 1040
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 1151
MalI GATC 4 cut(s) 21, 155, 845, 1351
MboI GATC 4 cut(s) 19, 153, 843, 1349
MboII GAAGA 8 cut(s) 85, 88, 331, 424, 427, 448, 851, 1344
MflI RGATCY 2 cut(s) 843, 1349
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 8 cut(s) 147, 203, 672, 750, 797, 1002, 1046, 1194
MlyI GAGTC 3 cut(s) 21, 632, 1132
MmeI TCCRAC 1 cut(s) 921
Mph1103I ATGCAT 1 cut(s) 1062
MroI TCCGGA 2 cut(s) 370, 721
MseI TTAA 8 cut(s) 63, 264, 288, 330, 402, 654, 993, 1161
MslI CAYNNNNRTG 1 cut(s) 1073
MspCI CTTAAG 1 cut(s) 1160
MspI CCGG 6 cut(s) 51, 196, 371, 722, 757, 985
MspR9I CCNGG 2 cut(s) 197, 1028
MvaI CCWGG 1 cut(s) 1028
MwoI GCNNNNNNNGC 6 cut(s) 224, 230, 542, 1103, 1112, 1235
NciI CCSGG 1 cut(s) 197
NdeII GATC 4 cut(s) 19, 153, 843, 1349
NlaIII CATG 7 cut(s) 410, 586, 629, 667, 820, 1072, 1229
NlaIV GGNNCC 3 cut(s) 303, 761, 851
NmuCI GTSAC 1 cut(s) 1151
NsiI ATGCAT 1 cut(s) 1062
NspI RCATGY 3 cut(s) 586, 1072, 1229
PaeI GCATGC 2 cut(s) 1072, 1229
PagI TCATGA 1 cut(s) 625
PciI ACATGT 1 cut(s) 582
PfeI GAWTC 2 cut(s) 163, 1184
PinAI ACCGGT 1 cut(s) 756
PleI GAGTC 3 cut(s) 20, 632, 1132
PpsI GAGTC 3 cut(s) 20, 632, 1132
PscI ACATGT 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 1026
PspFI CCCAGC 1 cut(s) 1330
PspGI CCWGG 1 cut(s) 1026
PspN4I GGNNCC 3 cut(s) 303, 761, 851
PspPI GGNCC 4 cut(s) 463, 849, 948, 982
PstI CTGCAG 2 cut(s) 229, 1108
PsuI RGATCY 2 cut(s) 843, 1349
RsaI GTAC 4 cut(s) 587, 960, 1079, 1271
RsaNI GTAC 4 cut(s) 586, 959, 1078, 1270
RseI CAYNNNNRTG 1 cut(s) 1073
SaqAI TTAA 8 cut(s) 63, 264, 288, 330, 402, 654, 993, 1161
Sau3AI GATC 4 cut(s) 19, 153, 843, 1349
Sau96I GGNCC 4 cut(s) 463, 849, 948, 982
ScaI AGTACT 1 cut(s) 1271
SchI GAGTC 3 cut(s) 21, 632, 1132
ScrFI CCNGG 2 cut(s) 197, 1028
SduI GDGCHC 1 cut(s) 202
SexAI ACCWGGT 1 cut(s) 1026
SfaNI GCATC 4 cut(s) 523, 532, 816, 1047
SfcI CTRYAG 2 cut(s) 225, 1104
SinI GGWCC 3 cut(s) 463, 948, 982
SmiMI CAYNNNNRTG 1 cut(s) 1073
SmlI CTYRAG 2 cut(s) 1160, 1273
SmoI CTYRAG 2 cut(s) 1160, 1273
SphI GCATGC 2 cut(s) 1072, 1229
Sse9I AATT 8 cut(s) 147, 203, 672, 750, 797, 1002, 1046, 1194
SsiI CCGC 3 cut(s) 284, 619, 999
SspMI CTAG 4 cut(s) 209, 474, 783, 1040
StyD4I CCNGG 2 cut(s) 195, 1026
StyI CCWWGG 2 cut(s) 348, 782
TaaI ACNGT 3 cut(s) 778, 896, 958
TaiI ACGT 1 cut(s) 270
TaqI TCGA 5 cut(s) 8, 142, 360, 711, 861
TaqII GACCGA 1 cut(s) 451
TasI AATT 8 cut(s) 147, 203, 672, 750, 797, 1002, 1046, 1194
TatI WGTACW 3 cut(s) 585, 1077, 1269
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 2 cut(s) 163, 1184
Tru1I TTAA 8 cut(s) 63, 264, 288, 330, 402, 654, 993, 1161
Tru9I TTAA 8 cut(s) 63, 264, 288, 330, 402, 654, 993, 1161
TscAI CASTG 3 cut(s) 51, 318, 1177
TseFI GTSAC 1 cut(s) 1151
TseI GCWGC 9 cut(s) 224, 227, 230, 443, 485, 560, 1097, 1115, 1235
Tsp45I GTSAC 1 cut(s) 1151
TspDTI ATGAA 5 cut(s) 288, 852, 979, 1026, 1344
TspRI CASTG 3 cut(s) 51, 318, 1177
Vha464I CTTAAG 1 cut(s) 1160
VpaK11BI GGWCC 3 cut(s) 463, 948, 982
XceI RCATGY 3 cut(s) 586, 1072, 1229
XmaJI CCTAGG 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 1032
XspI CTAG 4 cut(s) 209, 474, 783, 1040
ZrmI AGTACT 1 cut(s) 1271
Zsp2I ATGCAT 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.