RLG00000014891

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005966
Physical Location & Seq
Reverse (-)
59176828 .. 59177798
971 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014891

Sequence Viewer

Length: 756 bp
ATGCAGAATGAGAACCGCCCTCATGACTATATTGACTCACAGCCTGAGATTAACGAAAACATGAGAGCAATTCTGATGGACTGGCTGGTGGTTGTTCACAGCAAGTTCGAGCTTTCTCCGGAGACTTTCTACCTAACCACCAACATAATTGACCGGTTCCTTTCAGTCAAGACTGTGCCTAGGAGAGAGTTGCAATTAGTTGGCATCAGCGCCATGCTGATTGCCTCAAAGTATGAAGAGATCTGGCCCCCTCAGGTCGATGACTTTGTAAGCCTTTCGGACAATGCTTACAGTAATGTGCAGATATTGGTGATGGAGAAAATGATACTGGGCAAATTGGAGTGGACCTTGACTGTACCTACACTCTATGTGTTCTTGGTCCGGTTCATTAAAGCCGCAATTCCAGATGAACAAATGGAAAACCTGGTCTACTTTTTAGCCGAATTGGGTATGATGCATTATGGCATGCTAATGTACTGCCCTTCAATGGTTGCTGCCTCTGCAGTCTATGCTGCTAAATGCACTCTAAACAAGAGTCCTGCTTGGTGTGACACGCTTAAGCTTCACACTGGTTTCTCAGAATCTCAACTAATTGATTGTTCCAAAGTGTTGGTGAGCTTGCATGCTAAGGCTGCGAAAAACAAGCTTCAGGGTGTGTTCAAGAAGTACTTGAGTTCTGAGAGAGGTGCTGTGGCTTTGCTGTCTCCAGCCAAAGTGCTTTTGCCACCAGCCAAAGCTTCAGGAGGATCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

252

Amino Acids

28.17

Weight (kDa)

6.52

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 6 - 117 9.5e-47 Cyclin, N-terminal domain
Cyclin_C PF02984 120 - 236 1.7e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 429
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 2 cut(s) 16, 396
AclWI GGATC 1 cut(s) 754
AcuI CTGAAG 2 cut(s) 632, 723
AfaI GTAC 3 cut(s) 357, 476, 668
AfiI CCNNNNNNNGG 1 cut(s) 487
AflII CTTAAG 1 cut(s) 557
AgeI ACCGGT 1 cut(s) 153
AgsI TTSAA 2 cut(s) 486, 661
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 5 cut(s) 112, 562, 618, 646, 737
AluI AGCT 5 cut(s) 112, 562, 618, 646, 737
Alw26I GTCTC 2 cut(s) 116, 708
AlwI GGATC 1 cut(s) 754
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 494, 512, 632
AsiGI ACCGGT 1 cut(s) 153
AspA2I CCTAGG 1 cut(s) 179
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 3 cut(s) 246, 345, 379
AsuHPI GGTGA 2 cut(s) 322, 625
AvaII GGWCC 2 cut(s) 345, 379
AvrII CCTAGG 1 cut(s) 179
AxyI CCTNAGG 1 cut(s) 252
BbvI GCAGC 3 cut(s) 481, 499, 619
BccI CCATC 2 cut(s) 70, 307
BciT130I CCWGG 1 cut(s) 425
BcoDI GTCTC 2 cut(s) 116, 708
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 213
BfrI CTTAAG 1 cut(s) 557
BglII AGATCT 1 cut(s) 240
BisI GCNGC 4 cut(s) 396, 495, 513, 633
BlnI CCTAGG 1 cut(s) 179
BlsI GCNGC 4 cut(s) 397, 496, 514, 634
BmcAI AGTACT 1 cut(s) 668
Bme1390I CCNGG 1 cut(s) 425
Bme18I GGWCC 2 cut(s) 345, 379
BmgT120I GGNCC 3 cut(s) 246, 345, 379
BmiI GGNNCC 2 cut(s) 158, 248
BmrFI CCNGG 1 cut(s) 425
BmrI ACTGGG 1 cut(s) 338
BmsI GCATC 2 cut(s) 213, 444
BmuI ACTGGG 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 691
BsaJI CCNNGG 1 cut(s) 179
BsaWI WCCGGW 3 cut(s) 118, 153, 381
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 3 cut(s) 86, 333, 574
Bse21I CCTNAGG 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMII CTCAG 4 cut(s) 36, 266, 591, 669
BseNI ACTGG 3 cut(s) 86, 333, 574
BseXI GCAGC 3 cut(s) 481, 499, 619
BsgI GTGCAG 1 cut(s) 320
BshFI GGCC 1 cut(s) 247
BshTI ACCGGT 1 cut(s) 153
BsiSI CCGG 3 cut(s) 119, 154, 382
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 2 cut(s) 116, 708
BsnI GGCC 1 cut(s) 247
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 2 cut(s) 240, 746
BspACI CCGC 2 cut(s) 16, 396
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 4 cut(s) 37, 265, 590, 670
BspEI TCCGGA 1 cut(s) 118
BspHI TCATGA 1 cut(s) 22
BspLI GGNNCC 2 cut(s) 158, 248
BspMAI CTGCAG 1 cut(s) 505
BspPI GGATC 1 cut(s) 754
BspTI CTTAAG 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 3 cut(s) 86, 333, 574
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 2 cut(s) 240, 746
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 3 cut(s) 175, 293, 355
Bst6I CTCTTC 1 cut(s) 231
BstAFI CTTAAG 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 509
BstC8I GCNNGC 3 cut(s) 467, 620, 624
BstDEI CTNAG 5 cut(s) 45, 252, 577, 627, 678
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 2 cut(s) 243, 749
BstMAI GTCTC 2 cut(s) 116, 708
BstMBI GATC 2 cut(s) 240, 746
BstMWI GCNNNNNNNGC 3 cut(s) 500, 509, 632
BstNI CCWGG 1 cut(s) 425
BstNSI RCATGY 2 cut(s) 469, 626
BstSCI CCNGG 1 cut(s) 423
BstSFI CTRYAG 1 cut(s) 501
BstV1I GCAGC 3 cut(s) 481, 499, 619
BstX2I RGATCY 2 cut(s) 240, 746
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 2 cut(s) 240, 746
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 3 cut(s) 467, 620, 624
CciI TCATGA 1 cut(s) 22
CfoI GCGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 3 cut(s) 246, 345, 379
CsiI ACCWGGT 1 cut(s) 423
Csp6I GTAC 3 cut(s) 356, 475, 667
CspAI ACCGGT 1 cut(s) 153
CviAII CATG 5 cut(s) 23, 61, 214, 466, 623
CviQI GTAC 3 cut(s) 356, 475, 667
DdeI CTNAG 5 cut(s) 45, 252, 577, 627, 678
DpnI GATC 2 cut(s) 242, 748
DpnII GATC 2 cut(s) 240, 746
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 345, 379
Eco57I CTGAAG 2 cut(s) 632, 723
Eco81I CCTNAGG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 179
EcoT22I ATGCAT 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 5 cut(s) 26, 64, 217, 469, 626
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FatI CATG 5 cut(s) 22, 60, 213, 465, 622
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 4 cut(s) 396, 495, 513, 633
Fsp4HI GCNGC 4 cut(s) 396, 495, 513, 633
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 211
GluI GCNGC 4 cut(s) 396, 495, 513, 633
GsuI CTGGAG 1 cut(s) 690
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 1 cut(s) 247
HapII CCGG 3 cut(s) 119, 154, 382
HhaI GCGC 1 cut(s) 212
Hin1II CATG 5 cut(s) 26, 64, 217, 469, 626
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HindIII AAGCTT 3 cut(s) 560, 644, 735
HinfI GANTC 3 cut(s) 35, 535, 581
HpaII CCGG 3 cut(s) 119, 154, 382
HphI GGTGA 2 cut(s) 322, 625
Hpy166II GTNNAC 3 cut(s) 97, 345, 430
Hpy188I TCNGA 4 cut(s) 75, 280, 580, 679
Hpy188III TCNNGA 6 cut(s) 23, 119, 169, 404, 661, 741
Hpy8I GTNNAC 3 cut(s) 97, 345, 430
HpyAV CCTTC 1 cut(s) 492
HpyCH4III ACNGT 3 cut(s) 175, 293, 355
HpyCH4V TGCA 7 cut(s) 4, 193, 301, 457, 503, 522, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 509, 632
HpyF3I CTNAG 5 cut(s) 45, 252, 577, 627, 678
Hsp92II CATG 5 cut(s) 26, 64, 217, 469, 626
HspAI GCGC 1 cut(s) 210
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 240, 746
Lsp1109I GCAGC 3 cut(s) 481, 499, 619
LweI GCATC 2 cut(s) 213, 444
MabI ACCWGGT 1 cut(s) 423
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 548
MalI GATC 2 cut(s) 242, 748
MboI GATC 2 cut(s) 240, 746
MboII GAAGA 2 cut(s) 248, 741
MflI RGATCY 2 cut(s) 240, 746
MluCI AATT 7 cut(s) 69, 147, 194, 335, 399, 443, 591
MlyI GAGTC 2 cut(s) 29, 544
MnlI CCTC 6 cut(s) 30, 235, 261, 508, 677, 737
Mph1103I ATGCAT 1 cut(s) 459
MroI TCCGGA 1 cut(s) 118
MseI TTAA 3 cut(s) 51, 390, 558
MslI CAYNNNNRTG 1 cut(s) 470
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 3 cut(s) 119, 154, 382
MspR9I CCNGG 1 cut(s) 425
MvaI CCWGG 1 cut(s) 425
MwoI GCNNNNNNNGC 3 cut(s) 500, 509, 632
NdeII GATC 2 cut(s) 240, 746
NlaIII CATG 5 cut(s) 26, 64, 217, 469, 626
NlaIV GGNNCC 2 cut(s) 158, 248
NmuCI GTSAC 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 459
NspI RCATGY 2 cut(s) 469, 626
PaeI GCATGC 2 cut(s) 469, 626
PagI TCATGA 1 cut(s) 22
PfeI GAWTC 1 cut(s) 581
PinAI ACCGGT 1 cut(s) 153
PkrI GCNGC 4 cut(s) 397, 496, 514, 634
PleI GAGTC 2 cut(s) 29, 543
PpsI GAGTC 2 cut(s) 29, 543
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 158, 248
PspPI GGNCC 3 cut(s) 246, 345, 379
PstI CTGCAG 1 cut(s) 505
PsuI RGATCY 2 cut(s) 240, 746
RsaI GTAC 3 cut(s) 357, 476, 668
RsaNI GTAC 3 cut(s) 356, 475, 667
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 3 cut(s) 51, 390, 558
SatI GCNGC 4 cut(s) 396, 495, 513, 633
Sau3AI GATC 2 cut(s) 240, 746
Sau96I GGNCC 3 cut(s) 246, 345, 379
ScaI AGTACT 1 cut(s) 668
SchI GAGTC 2 cut(s) 29, 544
ScrFI CCNGG 1 cut(s) 425
SexAI ACCWGGT 1 cut(s) 423
SfaNI GCATC 2 cut(s) 213, 444
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 2 cut(s) 345, 379
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 557, 670
SmoI CTYRAG 2 cut(s) 557, 670
SphI GCATGC 2 cut(s) 469, 626
Sse9I AATT 7 cut(s) 69, 147, 194, 335, 399, 443, 591
SsiI CCGC 2 cut(s) 16, 396
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 423
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 3 cut(s) 175, 293, 355
TaqI TCGA 2 cut(s) 108, 258
TasI AATT 7 cut(s) 69, 147, 194, 335, 399, 443, 591
TatI WGTACW 2 cut(s) 474, 666
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 3 cut(s) 51, 390, 558
Tru9I TTAA 3 cut(s) 51, 390, 558
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 3 cut(s) 494, 512, 632
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 4 cut(s) 249, 376, 423, 741
TspRI CASTG 1 cut(s) 574
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 2 cut(s) 345, 379
XceI RCATGY 2 cut(s) 469, 626
XmaJI CCTAGG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 1 cut(s) 180
ZrmI AGTACT 1 cut(s) 668
Zsp2I ATGCAT 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.