Rw6G006280

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005966
Physical Location & Seq
Forward (+)
9953613 .. 9956850
3238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006280.1

Sequence Viewer

Length: 1350 bp
ATGGCTTCGAGAGTCGTTGATCAACAACAAGCCAGAGGTATGGCAGTGGCCGGAGTAGGAGTTAAGCCACAGAAGAAGAACGCTGTGGCGGATGGGAGAAACCGAAAACCACTTGGTGAGATTGGTAACCAGCAACTTGTTCGAGGAATTGAGATCAAGCCGAATCGCCCCATAACAAGGAACTTCCGGGCTCAATTACTAGCTAATGCACAGGCTGCAGCAGCTAATGAGAACAACAAGAAGCAAGTTTGTGTTAACGTGAATGAACTTGTGGCGGTTAAAAGGGATGAGGCACCCAAGCCAGTGCAGAAGAAAGTAGTTAATATCAAGTTGAAGCCCAAGGAGATAATCGAAATCAGTCCGGAGACAGAGGAAGGCTTGATTGAAAAGGTTAAGCATGAGAAGAAGAAAGAAGGAGCTTCAAAGAAGAAAGCAGCACCAACTCTTACTTCAGTCCTTACTGCTAGAAGCAAGGCTGCCTGTGGTTTGACTAATAAACCAAAGGATGTGATTGTTGATATTGATGCCAAAGATGCTGGTAATGACTTGGCTGCTGTTGAATATGTTGAGGACATGTACAAGTTCTATAAGCTTGTTGAGAATGAGAACCGCCCTCATGACTATATTGACTCACAGCCTGAGATTAACGAAAACATGAGAGCAATTCTGATGGACTGGCTGGTGGTTGTTCACAGCAAGTTCGAGCTTTCTCCCGAGACTTTCTACCTAACCACCAACATAATTGACCGGTTCCTTTCAGTCAAGACTGTGCCTAGGAGAGAGTTGCAATTAGTTGGCATCAGCGCCATGCTGATTGCCTCAAAGTATGAAGAGATCTGGCCCCCTCAGGTCGATGACTTTGTTAGCCTTTCGGACAATGCTTACAGTAATGTGCAGATATTGGTGATGGAGAAAATGATACTGGGTAAGTTGGAGTGGACCTTGACTGTACCTACACTCTATGTGTTCTTGGTCCGGTTCATTAAAGCCGCAATTCCAGATGAACAAATGGAAAACCTGGTCTACTTTCTAGCTGAATTGGGTATGATGCATTATGGTATGCTTATGTACTGCCCTTCAATGGTTGCTGCCTCTGCAGTCTATGCTGCTAAATGCACTCTAAACAAGAGTCCTGCTTGGTGTGACACGCTTAAGCTTCACACTGGTTTCTCAGAATCTCAACTAATTGATTGTTCCAAAGTGTTGGTGAGCTTGCATGCTAAGGCTGCGAAAAACAAGCTTCAGGGTGTGTTCAAGAAGTACTTGAGTTCTGAGAGAGGTGCTGTGGCTTTGCTGTCTCCAGCCAAAGTGCTTTTGCCCCCAGCCAAAGCTTCAGGAGGATCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

449

Amino Acids

49.77

Weight (kDa)

9.17

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 191 - 315 2.9e-48 Cyclin, N-terminal domain
Cyclin_C PF02984 318 - 434 5.7e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 1023
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 4 cut(s) 89, 275, 610, 990
AclWI GGATC 1 cut(s) 1348
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 3 cut(s) 435, 1226, 1317
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 4 cut(s) 578, 951, 1070, 1262
AfiI CCNNNNNNNGG 2 cut(s) 177, 1081
AflII CTTAAG 1 cut(s) 1151
AflIII ACRYGT 1 cut(s) 573
AgeI ACCGGT 1 cut(s) 747
AgsI TTSAA 6 cut(s) 334, 386, 423, 560, 1080, 1255
AjnI CCWGG 1 cut(s) 1017
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
Alw26I GTCTC 3 cut(s) 359, 710, 1302
AlwI GGATC 1 cut(s) 1348
Ama87I CYCGRG 1 cut(s) 713
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 2 cut(s) 48, 839
ApeKI GCWGC 9 cut(s) 215, 218, 221, 434, 476, 551, 1088, 1106, 1226
AsiGI ACCGGT 1 cut(s) 747
AspA2I CCTAGG 1 cut(s) 773
AspLEI GCGC 1 cut(s) 806
AspS9I GGNCC 3 cut(s) 840, 939, 973
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 3 cut(s) 128, 916, 1219
AvaI CYCGRG 1 cut(s) 713
AvaII GGWCC 2 cut(s) 939, 973
AvrII CCTAGG 1 cut(s) 773
AxyI CCTNAGG 1 cut(s) 846
BanI GGYRCC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 193
BbvI GCAGC 9 cut(s) 202, 230, 233, 446, 463, 538, 1075, 1093, 1213
BccI CCATC 3 cut(s) 86, 664, 901
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 1 cut(s) 1019
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 3 cut(s) 359, 710, 1302
BfaI CTAG 4 cut(s) 200, 465, 774, 1031
BfmI CTRYAG 2 cut(s) 216, 1095
BfoI RGCGCY 1 cut(s) 807
BfrI CTTAAG 1 cut(s) 1151
BglII AGATCT 1 cut(s) 834
BlnI CCTAGG 1 cut(s) 773
BmcAI AGTACT 1 cut(s) 1262
Bme1390I CCNGG 2 cut(s) 188, 1019
Bme18I GGWCC 2 cut(s) 939, 973
BmeT110I CYCGRG 1 cut(s) 713
BmgT120I GGNCC 3 cut(s) 840, 939, 973
BmiI GGNNCC 3 cut(s) 294, 752, 842
BmrFI CCNGG 2 cut(s) 188, 1019
BmrI ACTGGG 1 cut(s) 932
BmsI GCATC 4 cut(s) 514, 523, 807, 1038
BmuI ACTGGG 1 cut(s) 932
BpmI CTGGAG 1 cut(s) 1284
Bpu10I CCTNAGC 1 cut(s) 1221
BpuEI CTTGAG 1 cut(s) 1285
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 339, 773
BsaWI WCCGGW 3 cut(s) 361, 747, 975
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 1081
Bse118I RCCGGY 1 cut(s) 747
Bse1I ACTGG 4 cut(s) 302, 680, 927, 1168
Bse21I CCTNAGG 1 cut(s) 846
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 1 cut(s) 1019
BseDI CCNNGG 2 cut(s) 339, 773
BseGI GGATG 3 cut(s) 97, 292, 511
BseLI CCNNNNNNNGG 2 cut(s) 177, 1081
BseMII CTCAG 4 cut(s) 630, 860, 1185, 1263
BseNI ACTGG 4 cut(s) 302, 680, 927, 1168
BseXI GCAGC 9 cut(s) 202, 230, 233, 446, 463, 538, 1075, 1093, 1213
BseYI CCCAGC 1 cut(s) 1321
BsgI GTGCAG 2 cut(s) 326, 914
BshFI GGCC 2 cut(s) 50, 841
BshNI GGYRCC 1 cut(s) 292
BshTI ACCGGT 1 cut(s) 747
BsiHKCI CYCGRG 1 cut(s) 713
BsiSI CCGG 5 cut(s) 51, 187, 362, 748, 976
BslI CCNNNNNNNGG 2 cut(s) 177, 1081
BsmAI GTCTC 3 cut(s) 359, 710, 1302
BsnI GGCC 2 cut(s) 50, 841
BsoBI CYCGRG 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 193
Bsp13I TCCGGA 1 cut(s) 361
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 4 cut(s) 19, 153, 834, 1340
BspACI CCGC 4 cut(s) 89, 275, 610, 990
BspANI GGCC 2 cut(s) 50, 841
BspCNI CTCAG 4 cut(s) 631, 859, 1184, 1264
BspEI TCCGGA 1 cut(s) 361
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 3 cut(s) 294, 752, 842
BspMAI CTGCAG 2 cut(s) 220, 1099
BspPI GGATC 1 cut(s) 1348
BspT107I GGYRCC 1 cut(s) 292
BspTI CTTAAG 1 cut(s) 1151
BsrFI RCCGGY 1 cut(s) 747
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 4 cut(s) 302, 680, 927, 1168
BssAI RCCGGY 1 cut(s) 747
BssECI CCNNGG 2 cut(s) 339, 773
BssMI GATC 4 cut(s) 19, 153, 834, 1340
BssT1I CCWWGG 2 cut(s) 339, 773
Bst2UI CCWGG 1 cut(s) 1019
Bst4CI ACNGT 3 cut(s) 769, 887, 949
Bst6I CTCTTC 1 cut(s) 825
BstAFI CTTAAG 1 cut(s) 1151
BstAPI GCANNNNNTGC 2 cut(s) 215, 1103
BstAUI TGTACA 1 cut(s) 576
BstC8I GCNNGC 2 cut(s) 1214, 1218
BstDEI CTNAG 5 cut(s) 639, 846, 1171, 1221, 1272
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 3 cut(s) 97, 292, 511
BstH2I RGCGCY 1 cut(s) 807
BstHHI GCGC 1 cut(s) 806
BstKTI GATC 4 cut(s) 22, 156, 837, 1343
BstMAI GTCTC 3 cut(s) 359, 710, 1302
BstMBI GATC 4 cut(s) 19, 153, 834, 1340
BstMWI GCNNNNNNNGC 6 cut(s) 215, 221, 533, 1094, 1103, 1226
BstNI CCWGG 1 cut(s) 1019
BstNSI RCATGY 2 cut(s) 577, 1220
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 186, 1017
BstSFI CTRYAG 2 cut(s) 216, 1095
BstV1I GCAGC 9 cut(s) 202, 230, 233, 446, 463, 538, 1075, 1093, 1213
BstX2I RGATCY 2 cut(s) 834, 1340
BstXI CCANNNNNNTGG 2 cut(s) 40, 1204
BstYI RGATCY 2 cut(s) 834, 1340
Bsu36I CCTNAGG 1 cut(s) 846
BsuRI GGCC 2 cut(s) 50, 841
BtsCI GGATG 3 cut(s) 97, 292, 511
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 51, 309, 1161
Cac8I GCNNGC 2 cut(s) 1214, 1218
CciI TCATGA 1 cut(s) 616
CfoI GCGC 1 cut(s) 806
Cfr10I RCCGGY 1 cut(s) 747
Cfr13I GGNCC 3 cut(s) 840, 939, 973
CsiI ACCWGGT 1 cut(s) 1017
Csp6I GTAC 4 cut(s) 577, 950, 1069, 1261
CspAI ACCGGT 1 cut(s) 747
CviAII CATG 6 cut(s) 398, 574, 617, 655, 808, 1217
CviQI GTAC 4 cut(s) 577, 950, 1069, 1261
DdeI CTNAG 5 cut(s) 639, 846, 1171, 1221, 1272
DpnI GATC 4 cut(s) 21, 155, 836, 1342
DpnII GATC 4 cut(s) 19, 153, 834, 1340
DraIII CACNNNGTG 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
EciI GGCGGA 1 cut(s) 104
Eco130I CCWWGG 2 cut(s) 339, 773
Eco24I GRGCYC 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 939, 973
Eco57I CTGAAG 3 cut(s) 435, 1226, 1317
Eco81I CCTNAGG 1 cut(s) 846
Eco88I CYCGRG 1 cut(s) 713
Eco91I GGTNACC 1 cut(s) 125
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 1017
EcoT14I CCWWGG 2 cut(s) 339, 773
EcoT22I ATGCAT 1 cut(s) 1053
EcoT38I GRGCYC 1 cut(s) 193
ErhI CCWWGG 2 cut(s) 339, 773
FaeI CATG 6 cut(s) 401, 577, 620, 658, 811, 1220
FalI AAGNNNNNCTT 2 cut(s) 1247, 1279
FatI CATG 6 cut(s) 397, 573, 616, 654, 807, 1216
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 1 cut(s) 1023
FokI GGATG 3 cut(s) 104, 299, 518
FriOI GRGCYC 1 cut(s) 193
FspBI CTAG 4 cut(s) 200, 465, 774, 1031
GlaI GCGC 1 cut(s) 805
GsaI CCCAGC 1 cut(s) 1325
GsuI CTGGAG 1 cut(s) 1284
HaeII RGCGCY 1 cut(s) 807
HaeIII GGCC 2 cut(s) 50, 841
HapII CCGG 5 cut(s) 51, 187, 362, 748, 976
HhaI GCGC 1 cut(s) 806
Hin1II CATG 6 cut(s) 401, 577, 620, 658, 811, 1220
Hin6I GCGC 1 cut(s) 804
HinP1I GCGC 1 cut(s) 804
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 4 cut(s) 590, 1154, 1238, 1329
HinfI GANTC 5 cut(s) 12, 163, 629, 1129, 1175
HpaI GTTAAC 1 cut(s) 256
HpaII CCGG 5 cut(s) 51, 187, 362, 748, 976
HphI GGTGA 3 cut(s) 128, 916, 1219
Hpy166II GTNNAC 4 cut(s) 256, 691, 939, 1024
Hpy188I TCNGA 4 cut(s) 669, 874, 1174, 1273
Hpy188III TCNNGA 8 cut(s) 9, 362, 617, 713, 763, 998, 1255, 1335
Hpy8I GTNNAC 4 cut(s) 256, 691, 939, 1024
HpyAV CCTTC 3 cut(s) 368, 407, 1086
HpyCH4III ACNGT 3 cut(s) 769, 887, 949
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 9 cut(s) 209, 218, 307, 787, 895, 1051, 1097, 1116, 1216
HpyF10VI GCNNNNNNNGC 6 cut(s) 215, 221, 533, 1094, 1103, 1226
HpyF3I CTNAG 5 cut(s) 639, 846, 1171, 1221, 1272
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 6 cut(s) 401, 577, 620, 658, 811, 1220
HspAI GCGC 1 cut(s) 804
Kpn2I TCCGGA 1 cut(s) 361
Ksp22I TGATCA 1 cut(s) 19
KspAI GTTAAC 1 cut(s) 256
Kzo9I GATC 4 cut(s) 19, 153, 834, 1340
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 9 cut(s) 202, 230, 233, 446, 463, 538, 1075, 1093, 1213
LweI GCATC 4 cut(s) 514, 523, 807, 1038
MabI ACCWGGT 1 cut(s) 1017
MaeI CTAG 4 cut(s) 200, 465, 774, 1031
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 125, 1142
MalI GATC 4 cut(s) 21, 155, 836, 1342
MboI GATC 4 cut(s) 19, 153, 834, 1340
MboII GAAGA 8 cut(s) 85, 88, 322, 415, 418, 439, 842, 1335
MflI RGATCY 2 cut(s) 834, 1340
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 8 cut(s) 147, 194, 663, 741, 788, 993, 1037, 1185
MlyI GAGTC 3 cut(s) 21, 623, 1138
MmeI TCCRAC 1 cut(s) 912
Mph1103I ATGCAT 1 cut(s) 1053
MroI TCCGGA 1 cut(s) 361
MseI TTAA 8 cut(s) 63, 255, 279, 321, 393, 645, 984, 1152
MspCI CTTAAG 1 cut(s) 1151
MspI CCGG 5 cut(s) 51, 187, 362, 748, 976
MspR9I CCNGG 2 cut(s) 188, 1019
MvaI CCWGG 1 cut(s) 1019
MwoI GCNNNNNNNGC 6 cut(s) 215, 221, 533, 1094, 1103, 1226
NciI CCSGG 1 cut(s) 188
NdeII GATC 4 cut(s) 19, 153, 834, 1340
NlaIII CATG 6 cut(s) 401, 577, 620, 658, 811, 1220
NlaIV GGNNCC 3 cut(s) 294, 752, 842
NmuCI GTSAC 1 cut(s) 1142
NsiI ATGCAT 1 cut(s) 1053
NspI RCATGY 2 cut(s) 577, 1220
PaeI GCATGC 1 cut(s) 1220
PagI TCATGA 1 cut(s) 616
PciI ACATGT 1 cut(s) 573
PfeI GAWTC 2 cut(s) 163, 1175
PinAI ACCGGT 1 cut(s) 747
PleI GAGTC 3 cut(s) 20, 623, 1137
PpsI GAGTC 3 cut(s) 20, 623, 1137
PscI ACATGT 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 1017
PspEI GGTNACC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 1321
PspGI CCWGG 1 cut(s) 1017
PspN4I GGNNCC 3 cut(s) 294, 752, 842
PspPI GGNCC 3 cut(s) 840, 939, 973
PstI CTGCAG 2 cut(s) 220, 1099
PsuI RGATCY 2 cut(s) 834, 1340
RsaI GTAC 4 cut(s) 578, 951, 1070, 1262
RsaNI GTAC 4 cut(s) 577, 950, 1069, 1261
SaqAI TTAA 8 cut(s) 63, 255, 279, 321, 393, 645, 984, 1152
Sau3AI GATC 4 cut(s) 19, 153, 834, 1340
Sau96I GGNCC 3 cut(s) 840, 939, 973
ScaI AGTACT 1 cut(s) 1262
SchI GAGTC 3 cut(s) 21, 623, 1138
ScrFI CCNGG 2 cut(s) 188, 1019
SduI GDGCHC 1 cut(s) 193
SexAI ACCWGGT 1 cut(s) 1017
SfaNI GCATC 4 cut(s) 514, 523, 807, 1038
SfcI CTRYAG 2 cut(s) 216, 1095
SinI GGWCC 2 cut(s) 939, 973
SmlI CTYRAG 2 cut(s) 1151, 1264
SmoI CTYRAG 2 cut(s) 1151, 1264
SphI GCATGC 1 cut(s) 1220
Sse9I AATT 8 cut(s) 147, 194, 663, 741, 788, 993, 1037, 1185
SsiI CCGC 4 cut(s) 89, 275, 610, 990
SspMI CTAG 4 cut(s) 200, 465, 774, 1031
StyD4I CCNGG 2 cut(s) 186, 1017
StyI CCWWGG 2 cut(s) 339, 773
TaaI ACNGT 3 cut(s) 769, 887, 949
TaiI ACGT 1 cut(s) 261
TaqI TCGA 5 cut(s) 8, 142, 351, 702, 852
TasI AATT 8 cut(s) 147, 194, 663, 741, 788, 993, 1037, 1185
TatI WGTACW 3 cut(s) 576, 1068, 1260
TauI GCSGC 1 cut(s) 992
TfiI GAWTC 2 cut(s) 163, 1175
Tru1I TTAA 8 cut(s) 63, 255, 279, 321, 393, 645, 984, 1152
Tru9I TTAA 8 cut(s) 63, 255, 279, 321, 393, 645, 984, 1152
TscAI CASTG 3 cut(s) 51, 309, 1168
TseFI GTSAC 1 cut(s) 1142
TseI GCWGC 9 cut(s) 215, 218, 221, 434, 476, 551, 1088, 1106, 1226
Tsp45I GTSAC 1 cut(s) 1142
TspDTI ATGAA 5 cut(s) 279, 843, 970, 1017, 1335
TspRI CASTG 3 cut(s) 51, 309, 1168
Vha464I CTTAAG 1 cut(s) 1151
VpaK11BI GGWCC 2 cut(s) 939, 973
XceI RCATGY 2 cut(s) 577, 1220
XmaJI CCTAGG 1 cut(s) 773
XmiI GTMKAC 1 cut(s) 1023
XspI CTAG 4 cut(s) 200, 465, 774, 1031
ZrmI AGTACT 1 cut(s) 1262
Zsp2I ATGCAT 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.