Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005966

Physical Location & Seq

Genomic Coordinates Forward (+)

10182258 .. 10183340

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG071900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTACAAGTTCTATAAGCTTGTTGAGAATGAGAACCGCCCTCATGACTATTTGGACTCACAGCCCGAGATTAACGAAAACATGAGAGCAATTCTGATGGACTGGCTGGTAGTTGTTCACAGCAAGTTCGAGCTTTCTCCAGAGACTTTCTACCTAACCACCAACATAATTGATCGGTTCCTTTCAGTCAAGACTGTGCCAAGGAGAGAGTTGCAATTAGTTGGCATCAGCGCCATGCTGATTGCCTCAAAGTATGAAGAGATCTGGCCCCCTCAGGTCGATGACTTTGTTAGCCTTTCAGACAATGCTTACAGTAATGTGCAGATATTGGTGATGGAGAAAATGATACTGGGCAAGTTGGAGTGGACCTTGACTGTACCTACACTCTATGTGTTCTTGGTCCGGTTCATTAAAGCCGCAATTCCAGATGAACAAATGGAAAACCTGGTCTACTTTTTAGCGGAATTGGGTATGATGCATTATGGCATGCTTATGTACTGCCCTTCAATGGTTGCTGCCTCTGCAGTCTATGCTGCTAAATGCACTCTAAACAAGAGTCCTGCTTGGTGTGACACGCTTAAGCTTCACACTGGTTTCTCAGAATCTCAACTAATTGATTGTTCCAAAGTGTTGGTGAGCTTGCATGCTAAGGCTGCGAAAAACAAGCTTCAGGGTGTGTTCAAGAAGTACTTGAGTTCTGAGAGAGGTGCTGTGGCTTTGCTGTCTCCAGCAAAAGTGCTTTTGCCCCCAGCCAAAGCTTCAGGAGGATCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

258

Amino Acids

29.12

Weight (kDa)

6.96

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	1 - 124	3.5e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	127 - 243	1.8e-36	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT3G11520 AT3G11520 AT4G37490 AT5G06150 AT5G06150
fragaria_vesca	FvH4_2g04990 FvH4_2g04990
malus_domestica	MD12G1093900.v1.1
pyrus_communis	pycom12g07970
rosa_chinensis	RchiOBHm_Chr6g0254751
rosa_laevigata	RLG00000014891
rosa_multiflora	Rmu_sc0007716.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210550
rosa_samantha	Rh6AG071900 Rh6BG064000 Rh6CG063400 Rh6DG060500
rosa_wichuraiana	Rw6G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	3 cut(s)	37, 417, 461
AclWI	GGATC	1 cut(s)	775
AcuI	CTGAAG	2 cut(s)	653, 744
AfaI	GTAC	4 cut(s)	5, 378, 497, 689
AfiI	CCNNNNNNNGG	1 cut(s)	508
AflII	CTTAAG	1 cut(s)	578
AgsI	TTSAA	2 cut(s)	507, 682
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	6 cut(s)	19, 133, 583, 639, 667, 758
AluI	AGCT	6 cut(s)	19, 133, 583, 639, 667, 758
Alw26I	GTCTC	2 cut(s)	137, 729
AlwI	GGATC	1 cut(s)	775
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	3 cut(s)	515, 533, 653
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	267, 366, 400
AsuHPI	GGTGA	2 cut(s)	343, 646
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	366, 400
AxyI	CCTNAGG	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	502, 520, 640
BccI	CCATC	2 cut(s)	91, 328
BciT130I	CCWGG	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	137, 729
BfmI	CTRYAG	1 cut(s)	522
BfoI	RGCGCY	1 cut(s)	234
BfrI	CTTAAG	1 cut(s)	578
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	4 cut(s)	417, 516, 534, 654
BlsI	GCNGC	4 cut(s)	418, 517, 535, 655
BmcAI	AGTACT	1 cut(s)	689
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	2 cut(s)	366, 400
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	3 cut(s)	267, 366, 400
BmiI	GGNNCC	2 cut(s)	179, 269
BmrFI	CCNGG	1 cut(s)	446
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	234, 465
BmuI	ACTGGG	1 cut(s)	359
BpmI	CTGGAG	2 cut(s)	123, 711
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	712
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	3 cut(s)	107, 354, 595
Bse21I	CCTNAGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMII	CTCAG	3 cut(s)	287, 612, 690
BseNI	ACTGG	3 cut(s)	107, 354, 595
BseXI	GCAGC	3 cut(s)	502, 520, 640
BseYI	CCCAGC	1 cut(s)	748
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	2 cut(s)	137, 729
BsnI	GGCC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	172, 261, 767
BspACI	CCGC	3 cut(s)	37, 417, 461
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	3 cut(s)	286, 611, 691
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	179, 269
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	1 cut(s)	775
BspTI	CTTAAG	1 cut(s)	578
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	107, 354, 595
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	3 cut(s)	172, 261, 767
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	3 cut(s)	196, 314, 376
Bst6I	CTCTTC	1 cut(s)	252
BstAFI	CTTAAG	1 cut(s)	578
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	488, 641, 645
BstDEI	CTNAG	4 cut(s)	273, 598, 648, 699
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	3 cut(s)	175, 264, 770
BstMAI	GTCTC	2 cut(s)	137, 729
BstMBI	GATC	3 cut(s)	172, 261, 767
BstMWI	GCNNNNNNNGC	3 cut(s)	521, 530, 653
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	2 cut(s)	490, 647
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	522
BstV1I	GCAGC	3 cut(s)	502, 520, 640
BstX2I	RGATCY	2 cut(s)	261, 767
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	2 cut(s)	261, 767
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	3 cut(s)	488, 641, 645
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	267, 366, 400
CsiI	ACCWGGT	1 cut(s)	444
Csp6I	GTAC	4 cut(s)	4, 377, 496, 688
CviAII	CATG	5 cut(s)	44, 82, 235, 487, 644
CviQI	GTAC	4 cut(s)	4, 377, 496, 688
DdeI	CTNAG	4 cut(s)	273, 598, 648, 699
DpnI	GATC	3 cut(s)	174, 263, 769
DpnII	GATC	3 cut(s)	172, 261, 767
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	366, 400
Eco57I	CTGAAG	2 cut(s)	653, 744
Eco81I	CCTNAGG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	5 cut(s)	47, 85, 238, 490, 647
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FatI	CATG	5 cut(s)	43, 81, 234, 486, 643
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	4 cut(s)	417, 516, 534, 654
Fsp4HI	GCNGC	4 cut(s)	417, 516, 534, 654
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	4 cut(s)	417, 516, 534, 654
GsaI	CCCAGC	1 cut(s)	752
GsuI	CTGGAG	2 cut(s)	123, 711
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	1 cut(s)	403
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	5 cut(s)	47, 85, 238, 490, 647
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HindIII	AAGCTT	4 cut(s)	17, 581, 665, 756
HinfI	GANTC	3 cut(s)	56, 556, 602
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	2 cut(s)	343, 646
Hpy166II	GTNNAC	3 cut(s)	118, 366, 451
Hpy188I	TCNGA	4 cut(s)	96, 301, 601, 700
Hpy188III	TCNNGA	6 cut(s)	44, 140, 190, 425, 682, 762
Hpy8I	GTNNAC	3 cut(s)	118, 366, 451
HpyAV	CCTTC	1 cut(s)	513
HpyCH4III	ACNGT	3 cut(s)	196, 314, 376
HpyCH4V	TGCA	6 cut(s)	214, 322, 478, 524, 543, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	521, 530, 653
HpyF3I	CTNAG	4 cut(s)	273, 598, 648, 699
Hsp92II	CATG	5 cut(s)	47, 85, 238, 490, 647
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	172, 261, 767
Lsp1109I	GCAGC	3 cut(s)	502, 520, 640
LweI	GCATC	2 cut(s)	234, 465
MabI	ACCWGGT	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	3 cut(s)	174, 263, 769
MboI	GATC	3 cut(s)	172, 261, 767
MboII	GAAGA	2 cut(s)	269, 762
MflI	RGATCY	2 cut(s)	261, 767
MluCI	AATT	6 cut(s)	90, 168, 215, 420, 464, 612
MlyI	GAGTC	2 cut(s)	50, 565
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	6 cut(s)	51, 256, 282, 529, 698, 758
Mph1103I	ATGCAT	1 cut(s)	480
MseI	TTAA	3 cut(s)	72, 411, 579
MslI	CAYNNNNRTG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	3 cut(s)	521, 530, 653
NdeII	GATC	3 cut(s)	172, 261, 767
NlaIII	CATG	5 cut(s)	47, 85, 238, 490, 647
NlaIV	GGNNCC	2 cut(s)	179, 269
NmuCI	GTSAC	1 cut(s)	569
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	2 cut(s)	490, 647
PaeI	GCATGC	2 cut(s)	490, 647
PagI	TCATGA	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	602
PkrI	GCNGC	4 cut(s)	418, 517, 535, 655
PleI	GAGTC	2 cut(s)	50, 564
PpsI	GAGTC	2 cut(s)	50, 564
Psp6I	CCWGG	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	179, 269
PspPI	GGNCC	3 cut(s)	267, 366, 400
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	2 cut(s)	261, 767
RsaI	GTAC	4 cut(s)	5, 378, 497, 689
RsaNI	GTAC	4 cut(s)	4, 377, 496, 688
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	3 cut(s)	72, 411, 579
SatI	GCNGC	4 cut(s)	417, 516, 534, 654
Sau3AI	GATC	3 cut(s)	172, 261, 767
Sau96I	GGNCC	3 cut(s)	267, 366, 400
ScaI	AGTACT	1 cut(s)	689
SchI	GAGTC	2 cut(s)	50, 565
ScrFI	CCNGG	1 cut(s)	446
SexAI	ACCWGGT	1 cut(s)	444
SfaNI	GCATC	2 cut(s)	234, 465
SfcI	CTRYAG	1 cut(s)	522
SinI	GGWCC	2 cut(s)	366, 400
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	578, 691
SmoI	CTYRAG	2 cut(s)	578, 691
SphI	GCATGC	2 cut(s)	490, 647
Sse9I	AATT	6 cut(s)	90, 168, 215, 420, 464, 612
SsiI	CCGC	3 cut(s)	37, 417, 461
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	196, 314, 376
TaqI	TCGA	2 cut(s)	129, 279
TasI	AATT	6 cut(s)	90, 168, 215, 420, 464, 612
TatI	WGTACW	3 cut(s)	3, 495, 687
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	3 cut(s)	72, 411, 579
Tru9I	TTAA	3 cut(s)	72, 411, 579
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	3 cut(s)	515, 533, 653
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	4 cut(s)	270, 397, 444, 762
TspRI	CASTG	1 cut(s)	595
Vha464I	CTTAAG	1 cut(s)	578
VpaK11BI	GGWCC	2 cut(s)	366, 400
XceI	RCATGY	2 cut(s)	490, 647
XmiI	GTMKAC	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.