Rroxscaffold_7G00210550

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
61036751 .. 61040166
3416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210550.1

Sequence Viewer

Length: 1350 bp
ATGGCTTCGAGAGTCGTTGATCAACAACAAGCCAGAGGTATGGCAGTGGCCGGAGTAGGAGTTAAGCCACCGAAGAAGAACGCTGTGGCGGATGGGCGAAACCGAAAACCACTTGGTGAGATTGGTAACCAGCAACTTGTTCGAGGAATTGAGATCAAGCCGAATCGCCCTATAACAAGGAACTTCCGGGCTCAATTACTAGCTAATGCACAGGCTGTAGCGGCTAATGAGAACAACAAGAAGCAAGTTTGTGTAAACGTGAATGAACTTGTGGCGGTTAAAAGGGATGAGGCACCCAAGCCAGTGCAGAAGAAAGTAGTTAATATCAAGTTGAAGCCCAAGGAGATAATCGAAATCAGTCCGGACACAGAGGAAGGCTTGATTGAAAAGGTTAAGCATGAGAAGAAGAAAGAAGGAGCTTCAAAGAAGAAAGCGGCACCAACTCTTACTTCAGTCCTTACTGCTAGAAGCAAGGCTGCTTGTGGTTTGACTAATAAACCAAAGGAATTGATTGTTGATATTGATGCCAAAGATGCTGGTAATGACTTAGCTGCTGTTGAATATGTTGAGGACATGTACAAGTTCTATAAGCTTGTTGAGAATGAGAACCGCCCTCATGACTATATTGACTCACAGCCTGAGATTAACGAAAACATGAGAGCAATTCTGATGGACTGGCTGGTGGTTGTTCACAGCAAGTTCGAGCTTTCTCCGGAGACTTTCTACCTAACCACCAACATAATTGACCGGTTCCTTTCAGTCAAGACTGTGCCTCGGAGAGAGTTGCAATTAGTTGGCATCAGCGCCATGCTGATTGCCTCAAAGTATGAAGAGATCTGGCCCCCTCAGGTCGATGACTTTGTTAGCCTTTCGGACAATGCTTACAGTAATGTGCAGATATTGGTGATGGAGAAAATGATACTGGGCAAGTTGGAGTGGACCTTGACTGTACCTACACTCTATGTGTTCTTGGTCCGGTTCATTAAAGCCGCAATTCCAGATGAACAAATGGAAAACCTGGTCTACTTTTTAGCTGAATTGGGTATGATGCATTATGGCATGCTAATGTACTGCCCTTCAATGGTTGCTGCCTCTGCAGTCTATGCTGCTAAATGCACTCTAAACAAGAGTCCTGCTTGGTGTGACACGCTTAAGCTTCACACTGGTTTCTCAGAATCTCAACTAATTGATTGTTCCAAAGTGTTGGTGAGCTTGCATGCTAAGGCTGCGAAAAACAAGCTTCAGGGTGTGTTCAAGAAGTACTTGAGTTCTGAGAGAGGTGCTGTGGCTTTGCTGTCTCCAGCCAAAGTGCTTTTGCCACCAGCCAAAGCTTCAGGAGGATCTTCATAG
Functional Annotation

Protein Analysis

449

Amino Acids

49.78

Weight (kDa)

9.17

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 191 - 315 2.9e-48 Cyclin, N-terminal domain
Cyclin_C PF02984 318 - 434 5.7e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 292, 436
AccI GTMKAC 1 cut(s) 1023
AccIII TCCGGA 2 cut(s) 361, 712
AciI CCGC 6 cut(s) 89, 221, 275, 434, 610, 990
AclWI GGATC 1 cut(s) 1348
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 3 cut(s) 435, 1226, 1317
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 4 cut(s) 578, 951, 1070, 1262
AfiI CCNNNNNNNGG 1 cut(s) 1081
AflII CTTAAG 1 cut(s) 1151
AflIII ACRYGT 1 cut(s) 573
AgeI ACCGGT 1 cut(s) 747
AgsI TTSAA 6 cut(s) 334, 386, 423, 560, 1080, 1255
AjnI CCWGG 1 cut(s) 1017
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
Alw26I GTCTC 2 cut(s) 710, 1302
AlwI GGATC 1 cut(s) 1348
Aor13HI TCCGGA 2 cut(s) 361, 712
AoxI GGCC 2 cut(s) 48, 839
ApeKI GCWGC 5 cut(s) 476, 551, 1088, 1106, 1226
AsiGI ACCGGT 1 cut(s) 747
AspLEI GCGC 1 cut(s) 806
AspS9I GGNCC 3 cut(s) 840, 939, 973
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 3 cut(s) 128, 916, 1219
AvaII GGWCC 2 cut(s) 939, 973
AxyI CCTNAGG 1 cut(s) 846
BanI GGYRCC 2 cut(s) 292, 436
BanII GRGCYC 1 cut(s) 193
BbvI GCAGC 5 cut(s) 463, 538, 1075, 1093, 1213
BccI CCATC 3 cut(s) 86, 664, 901
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 1 cut(s) 1019
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 2 cut(s) 710, 1302
BfaI CTAG 2 cut(s) 200, 465
BfmI CTRYAG 2 cut(s) 216, 1095
BfoI RGCGCY 1 cut(s) 807
BfrI CTTAAG 1 cut(s) 1151
BglII AGATCT 1 cut(s) 834
BisI GCNGC 8 cut(s) 222, 435, 477, 552, 990, 1089, 1107, 1227
BlsI GCNGC 8 cut(s) 223, 436, 478, 553, 991, 1090, 1108, 1228
BmcAI AGTACT 1 cut(s) 1262
Bme1390I CCNGG 2 cut(s) 188, 1019
Bme18I GGWCC 2 cut(s) 939, 973
BmgT120I GGNCC 3 cut(s) 840, 939, 973
BmiI GGNNCC 4 cut(s) 294, 438, 752, 842
BmrFI CCNGG 2 cut(s) 188, 1019
BmrI ACTGGG 1 cut(s) 932
BmsI GCATC 4 cut(s) 514, 523, 807, 1038
BmuI ACTGGG 1 cut(s) 932
BpmI CTGGAG 1 cut(s) 1284
Bpu10I CCTNAGC 1 cut(s) 1221
BpuEI CTTGAG 1 cut(s) 1285
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 339, 773
BsaWI WCCGGW 4 cut(s) 361, 712, 747, 975
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 1081
Bse118I RCCGGY 1 cut(s) 747
Bse1I ACTGG 4 cut(s) 302, 680, 927, 1168
Bse21I CCTNAGG 1 cut(s) 846
BseAI TCCGGA 2 cut(s) 361, 712
BseBI CCWGG 1 cut(s) 1019
BseDI CCNNGG 2 cut(s) 339, 773
BseGI GGATG 2 cut(s) 97, 292
BseLI CCNNNNNNNGG 1 cut(s) 1081
BseMII CTCAG 4 cut(s) 630, 860, 1185, 1263
BseNI ACTGG 4 cut(s) 302, 680, 927, 1168
BseXI GCAGC 5 cut(s) 463, 538, 1075, 1093, 1213
BsgI GTGCAG 2 cut(s) 326, 914
BshFI GGCC 2 cut(s) 50, 841
BshNI GGYRCC 2 cut(s) 292, 436
BshTI ACCGGT 1 cut(s) 747
BsiSI CCGG 6 cut(s) 51, 187, 362, 713, 748, 976
BslI CCNNNNNNNGG 1 cut(s) 1081
BsmAI GTCTC 2 cut(s) 710, 1302
BsnI GGCC 2 cut(s) 50, 841
Bsp1286I GDGCHC 1 cut(s) 193
Bsp13I TCCGGA 2 cut(s) 361, 712
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 4 cut(s) 19, 153, 834, 1340
BspACI CCGC 6 cut(s) 89, 221, 275, 434, 610, 990
BspANI GGCC 2 cut(s) 50, 841
BspCNI CTCAG 4 cut(s) 631, 859, 1184, 1264
BspEI TCCGGA 2 cut(s) 361, 712
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 4 cut(s) 294, 438, 752, 842
BspMAI CTGCAG 1 cut(s) 1099
BspPI GGATC 1 cut(s) 1348
BspT107I GGYRCC 2 cut(s) 292, 436
BspTI CTTAAG 1 cut(s) 1151
BsrFI RCCGGY 1 cut(s) 747
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 4 cut(s) 302, 680, 927, 1168
BssAI RCCGGY 1 cut(s) 747
BssECI CCNNGG 2 cut(s) 339, 773
BssMI GATC 4 cut(s) 19, 153, 834, 1340
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 1019
Bst4CI ACNGT 3 cut(s) 769, 887, 949
Bst6I CTCTTC 1 cut(s) 825
BstAFI CTTAAG 1 cut(s) 1151
BstAPI GCANNNNNTGC 1 cut(s) 1103
BstAUI TGTACA 1 cut(s) 576
BstC8I GCNNGC 3 cut(s) 1061, 1214, 1218
BstDEI CTNAG 6 cut(s) 547, 639, 846, 1171, 1221, 1272
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 2 cut(s) 97, 292
BstH2I RGCGCY 1 cut(s) 807
BstHHI GCGC 1 cut(s) 806
BstKTI GATC 4 cut(s) 22, 156, 837, 1343
BstMAI GTCTC 2 cut(s) 710, 1302
BstMBI GATC 4 cut(s) 19, 153, 834, 1340
BstMWI GCNNNNNNNGC 5 cut(s) 221, 533, 1094, 1103, 1226
BstNI CCWGG 1 cut(s) 1019
BstNSI RCATGY 3 cut(s) 577, 1063, 1220
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 186, 1017
BstSFI CTRYAG 2 cut(s) 216, 1095
BstV1I GCAGC 5 cut(s) 463, 538, 1075, 1093, 1213
BstX2I RGATCY 2 cut(s) 834, 1340
BstXI CCANNNNNNTGG 2 cut(s) 40, 1204
BstYI RGATCY 2 cut(s) 834, 1340
Bsu36I CCTNAGG 1 cut(s) 846
BsuRI GGCC 2 cut(s) 50, 841
BtsCI GGATG 2 cut(s) 97, 292
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 51, 309, 1161
Cac8I GCNNGC 3 cut(s) 1061, 1214, 1218
CciI TCATGA 1 cut(s) 616
CfoI GCGC 1 cut(s) 806
Cfr10I RCCGGY 1 cut(s) 747
Cfr13I GGNCC 3 cut(s) 840, 939, 973
CsiI ACCWGGT 1 cut(s) 1017
Csp6I GTAC 4 cut(s) 577, 950, 1069, 1261
CspAI ACCGGT 1 cut(s) 747
CviAII CATG 7 cut(s) 398, 574, 617, 655, 808, 1060, 1217
CviQI GTAC 4 cut(s) 577, 950, 1069, 1261
DdeI CTNAG 6 cut(s) 547, 639, 846, 1171, 1221, 1272
DpnI GATC 4 cut(s) 21, 155, 836, 1342
DpnII GATC 4 cut(s) 19, 153, 834, 1340
DraIII CACNNNGTG 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
EciI GGCGGA 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 939, 973
Eco57I CTGAAG 3 cut(s) 435, 1226, 1317
Eco81I CCTNAGG 1 cut(s) 846
Eco91I GGTNACC 1 cut(s) 125
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 1017
EcoT14I CCWWGG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 1053
EcoT38I GRGCYC 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 7 cut(s) 401, 577, 620, 658, 811, 1063, 1220
FalI AAGNNNNNCTT 2 cut(s) 1247, 1279
FatI CATG 7 cut(s) 397, 573, 616, 654, 807, 1059, 1216
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 1 cut(s) 1023
Fnu4HI GCNGC 8 cut(s) 222, 435, 477, 552, 990, 1089, 1107, 1227
FokI GGATG 2 cut(s) 104, 299
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 8 cut(s) 222, 435, 477, 552, 990, 1089, 1107, 1227
FspBI CTAG 2 cut(s) 200, 465
GlaI GCGC 1 cut(s) 805
GluI GCNGC 8 cut(s) 222, 435, 477, 552, 990, 1089, 1107, 1227
GsuI CTGGAG 1 cut(s) 1284
HaeII RGCGCY 1 cut(s) 807
HaeIII GGCC 2 cut(s) 50, 841
HapII CCGG 6 cut(s) 51, 187, 362, 713, 748, 976
HhaI GCGC 1 cut(s) 806
Hin1II CATG 7 cut(s) 401, 577, 620, 658, 811, 1063, 1220
Hin6I GCGC 1 cut(s) 804
HinP1I GCGC 1 cut(s) 804
HindIII AAGCTT 4 cut(s) 590, 1154, 1238, 1329
HinfI GANTC 5 cut(s) 12, 163, 629, 1129, 1175
HpaII CCGG 6 cut(s) 51, 187, 362, 713, 748, 976
HphI GGTGA 3 cut(s) 128, 916, 1219
Hpy166II GTNNAC 4 cut(s) 256, 691, 939, 1024
Hpy188I TCNGA 5 cut(s) 669, 777, 874, 1174, 1273
Hpy188III TCNNGA 8 cut(s) 9, 362, 617, 713, 763, 998, 1255, 1335
Hpy8I GTNNAC 4 cut(s) 256, 691, 939, 1024
HpyAV CCTTC 3 cut(s) 368, 407, 1086
HpyCH4III ACNGT 3 cut(s) 769, 887, 949
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 8 cut(s) 209, 307, 787, 895, 1051, 1097, 1116, 1216
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 533, 1094, 1103, 1226
HpyF3I CTNAG 6 cut(s) 547, 639, 846, 1171, 1221, 1272
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 7 cut(s) 401, 577, 620, 658, 811, 1063, 1220
HspAI GCGC 1 cut(s) 804
Kpn2I TCCGGA 2 cut(s) 361, 712
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 4 cut(s) 19, 153, 834, 1340
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 5 cut(s) 463, 538, 1075, 1093, 1213
LweI GCATC 4 cut(s) 514, 523, 807, 1038
MabI ACCWGGT 1 cut(s) 1017
MaeI CTAG 2 cut(s) 200, 465
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 125, 1142
MalI GATC 4 cut(s) 21, 155, 836, 1342
MboI GATC 4 cut(s) 19, 153, 834, 1340
MboII GAAGA 8 cut(s) 85, 88, 322, 415, 418, 439, 842, 1335
MflI RGATCY 2 cut(s) 834, 1340
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 9 cut(s) 147, 194, 506, 663, 741, 788, 993, 1037, 1185
MlyI GAGTC 3 cut(s) 21, 623, 1138
MmeI TCCRAC 1 cut(s) 912
Mph1103I ATGCAT 1 cut(s) 1053
MroI TCCGGA 2 cut(s) 361, 712
MseI TTAA 7 cut(s) 63, 279, 321, 393, 645, 984, 1152
MslI CAYNNNNRTG 1 cut(s) 1064
MspCI CTTAAG 1 cut(s) 1151
MspI CCGG 6 cut(s) 51, 187, 362, 713, 748, 976
MspR9I CCNGG 2 cut(s) 188, 1019
MvaI CCWGG 1 cut(s) 1019
MwoI GCNNNNNNNGC 5 cut(s) 221, 533, 1094, 1103, 1226
NciI CCSGG 1 cut(s) 188
NdeII GATC 4 cut(s) 19, 153, 834, 1340
NlaIII CATG 7 cut(s) 401, 577, 620, 658, 811, 1063, 1220
NlaIV GGNNCC 4 cut(s) 294, 438, 752, 842
NmuCI GTSAC 1 cut(s) 1142
NsiI ATGCAT 1 cut(s) 1053
NspI RCATGY 3 cut(s) 577, 1063, 1220
PaeI GCATGC 2 cut(s) 1063, 1220
PagI TCATGA 1 cut(s) 616
PciI ACATGT 1 cut(s) 573
PfeI GAWTC 2 cut(s) 163, 1175
PinAI ACCGGT 1 cut(s) 747
PkrI GCNGC 8 cut(s) 223, 436, 478, 553, 991, 1090, 1108, 1228
PleI GAGTC 3 cut(s) 20, 623, 1137
PpsI GAGTC 3 cut(s) 20, 623, 1137
PscI ACATGT 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 1017
PspEI GGTNACC 1 cut(s) 125
PspGI CCWGG 1 cut(s) 1017
PspN4I GGNNCC 4 cut(s) 294, 438, 752, 842
PspPI GGNCC 3 cut(s) 840, 939, 973
PstI CTGCAG 1 cut(s) 1099
PsuI RGATCY 2 cut(s) 834, 1340
RsaI GTAC 4 cut(s) 578, 951, 1070, 1262
RsaNI GTAC 4 cut(s) 577, 950, 1069, 1261
RseI CAYNNNNRTG 1 cut(s) 1064
SaqAI TTAA 7 cut(s) 63, 279, 321, 393, 645, 984, 1152
SatI GCNGC 8 cut(s) 222, 435, 477, 552, 990, 1089, 1107, 1227
Sau3AI GATC 4 cut(s) 19, 153, 834, 1340
Sau96I GGNCC 3 cut(s) 840, 939, 973
ScaI AGTACT 1 cut(s) 1262
SchI GAGTC 3 cut(s) 21, 623, 1138
ScrFI CCNGG 2 cut(s) 188, 1019
SduI GDGCHC 1 cut(s) 193
SexAI ACCWGGT 1 cut(s) 1017
SfaNI GCATC 4 cut(s) 514, 523, 807, 1038
SfcI CTRYAG 2 cut(s) 216, 1095
SinI GGWCC 2 cut(s) 939, 973
SmiMI CAYNNNNRTG 1 cut(s) 1064
SmlI CTYRAG 2 cut(s) 1151, 1264
SmoI CTYRAG 2 cut(s) 1151, 1264
SphI GCATGC 2 cut(s) 1063, 1220
Sse9I AATT 9 cut(s) 147, 194, 506, 663, 741, 788, 993, 1037, 1185
SsiI CCGC 6 cut(s) 89, 221, 275, 434, 610, 990
SspMI CTAG 2 cut(s) 200, 465
StyD4I CCNGG 2 cut(s) 186, 1017
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 3 cut(s) 769, 887, 949
TaiI ACGT 1 cut(s) 261
TaqI TCGA 5 cut(s) 8, 142, 351, 702, 852
TasI AATT 9 cut(s) 147, 194, 506, 663, 741, 788, 993, 1037, 1185
TatI WGTACW 3 cut(s) 576, 1068, 1260
TauI GCSGC 3 cut(s) 224, 437, 992
TfiI GAWTC 2 cut(s) 163, 1175
Tru1I TTAA 7 cut(s) 63, 279, 321, 393, 645, 984, 1152
Tru9I TTAA 7 cut(s) 63, 279, 321, 393, 645, 984, 1152
TscAI CASTG 3 cut(s) 51, 309, 1168
TseFI GTSAC 1 cut(s) 1142
TseI GCWGC 5 cut(s) 476, 551, 1088, 1106, 1226
Tsp45I GTSAC 1 cut(s) 1142
TspDTI ATGAA 5 cut(s) 279, 843, 970, 1017, 1335
TspRI CASTG 3 cut(s) 51, 309, 1168
Vha464I CTTAAG 1 cut(s) 1151
VpaK11BI GGWCC 2 cut(s) 939, 973
XceI RCATGY 3 cut(s) 577, 1063, 1220
XmiI GTMKAC 1 cut(s) 1023
XspI CTAG 2 cut(s) 200, 465
ZrmI AGTACT 1 cut(s) 1262
Zsp2I ATGCAT 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.