Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005966

Physical Location & Seq

Genomic Coordinates Reverse (-)

17621886 .. 17624308

Gene Structure 2423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGATGACTTCTCGTTCGATTGTTCCTCAACAATCCACGGATGATGTTGTTGTGGTAGATGGCAAAAACGTAGCGAAAGGAAGAAACCGTCAAGTTCTTGGTGATATAGGTAATGTTGTTCGAGGAAATTACCCAAAGAACAACGAACCGGAAAAGATCAATCATCGTCCTCGTACACGATCTCAAAATCCCACGCTTCTTGTGGAGGATAATCTCAAAAAACCTGTAGTCAAGAGAAACGCAGTACCAAAGCCGAAGAAAGTGGCTGGGAAACCAAAGGTAGTAGACGTGATTGAGATAAGTTCAGACAGTGATGAAGAACTTGGTTTAGTTGCTGCTCGAGAGAAGAAGGCTACTAAGAAGAAAGCGACCACTTACACATCTGTTCTTACTGCTAGAAGCAAGGCTGCTTGTGGTTTAGAGAAGAAACAGAAAGAAAAGATTGTTGATATCGATTCTGCTGATGTTGAGAATGACCTCGCAGCTGTGGAATATGTGGAAGATATTTACAGTTTTTACAAGTCTGTTGAGAGTGAATGGAGGCCACGAGATTACATGGCATCTCAGCCTGATATTAATGAAAAGATGAGACTGATCCTGGTGGAGTGGTTGATTGATGTGCATGTCCGATTCGAGCTAAACCCGGAAACATTTTACCTCACTGTTAACATTCTGGATCGGTTCTTGTCGGTTAAGCCAGTGCCTCGAAAAGAACTGCAGCTTGTTGGTCTCAGTGCTCTTCTCATGTCGGCCAAGTATGAAGAAATTTGGCCACCACAGGTGGAGGATCTAGTTGATATTGCAGACCATGCATACAGTCACAAACAGATTCTGGTGATGGAGAAGACAATACTGTCTACACTTGAGTGGTACTTGACAGTTCCGACTCATTATGTCTTCCTAGCTCGTTTCATCAAAGCTTCCATTGCAGACGAAAAGATGGAGAATATGGTGCACTATTTGGCTGAGTTAGGCGTAATGCATTACGATACGATGATAATGTTCAGTCCATCAATGGTAGCTGCTTCTGCAATCTACGCAGCAAGATCTTCTCTCCGCCAAGTTCCCATATGGACCAGCACTCTCAAGCATCACACTGGCTATTCTGAGACTCAGCTCATGGACTGTGCAAAGCTGTTGGCGTATCAGCAATGGAAGCAACAAGAAGAAGGGAGTGAGAGCAGTACTAAGGGAGCTTTACGAAAGAAATACTCCAAGGACGAACGCTTCGCTGTGGCTTTGATCCCTCCGGCCAAAGCTTTGTTGACCGGAACTGAATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

428

Amino Acids

48.46

Weight (kDa)

8.47

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	168 - 293	1.5e-47	Cyclin, N-terminal domain
Cyclin_C	PF02984	295 - 417	5.1e-33	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT1G34460 AT3G11520 AT3G11520 AT4G37490 AT5G06150 AT5G06150
fragaria_vesca	FvH4_2g04990 FvH4_2g04990
malus_domestica	MD12G1093900.v1.1
pyrus_communis	pycom12g07970
rosa_chinensis	RchiOBHm_Chr6g0254751
rosa_laevigata	RLG00000014891
rosa_multiflora	Rmu_sc0007716.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210550
rosa_samantha	Rh6AG071900 Rh6BG064000 Rh6CG063400 Rh6DG060500
rosa_wichuraiana	Rw6G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	853
AccI	GTMKAC	2 cut(s)	285, 857
AciI	CCGC	1 cut(s)	1057
AclWI	GGATC	4 cut(s)	589, 684, 795, 1237
AcoI	YGGCCR	3 cut(s)	750, 770, 1251
AcsI	RAATTY	1 cut(s)	765
AfaI	GTAC	4 cut(s)	175, 246, 872, 1186
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	597
AleI	CACNNNNGTG	1 cut(s)	865
Alw21I	GWGCWC	2 cut(s)	739, 957
Alw26I	GTCTC	3 cut(s)	583, 734, 1103
Alw44I	GTGCAC	1 cut(s)	953
AlwI	GGATC	4 cut(s)	589, 684, 795, 1237
AlwNI	CAGNNNCTG	1 cut(s)	832
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	4 cut(s)	542, 750, 770, 1251
ApaLI	GTGCAC	1 cut(s)	953
ApeKI	GCWGC	6 cut(s)	335, 407, 482, 718, 1022, 1040
ApoI	RAATTY	1 cut(s)	765
ArsI	GACNNNNNNTTYG	3 cut(s)	30, 1211, 1243
AseI	ATTAAT	1 cut(s)	576
AspS9I	GGNCC	1 cut(s)	1074
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	2 cut(s)	113, 847
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	1074
BaeGI	GKGCMC	1 cut(s)	957
BalI	TGGCCA	1 cut(s)	772
BauI	CACGAG	1 cut(s)	546
BbsI	GAAGAC	2 cut(s)	851, 889
Bbv12I	GWGCWC	2 cut(s)	739, 957
BbvI	GCAGC	6 cut(s)	322, 394, 494, 730, 1009, 1052
BccI	CCATC	4 cut(s)	53, 832, 934, 1018
BciT130I	CCWGG	1 cut(s)	599
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	3 cut(s)	583, 734, 1103
BfaI	CTAG	3 cut(s)	396, 791, 902
BfmI	CTRYAG	2 cut(s)	225, 716
BglII	AGATCT	1 cut(s)	1046
BisI	GCNGC	6 cut(s)	336, 408, 483, 719, 1023, 1041
BlsI	GCNGC	6 cut(s)	337, 409, 484, 720, 1024, 1042
BmcAI	AGTACT	1 cut(s)	1186
Bme1390I	CCNGG	2 cut(s)	599, 644
Bme18I	GGWCC	1 cut(s)	1074
BmeT110I	CYCGRG	1 cut(s)	339
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	1074
BmrFI	CCNGG	2 cut(s)	599, 644
BmsI	GCATC	2 cut(s)	569, 1099
BpiI	GAAGAC	2 cut(s)	851, 889
BpuEI	CTTGAG	2 cut(s)	884, 1070
BpuMI	CCSGG	1 cut(s)	644
Bsa29I	ATCGAT	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	734
BsaJI	CCNNGG	2 cut(s)	36, 1215
BsaWI	WCCGGW	2 cut(s)	148, 1268
Bse1I	ACTGG	2 cut(s)	698, 1102
Bse3DI	GCAATG	2 cut(s)	924, 1157
BseBI	CCWGG	1 cut(s)	599
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	36, 1215
BseGI	GGATG	1 cut(s)	46
BseMI	GCAATG	2 cut(s)	924, 1157
BseMII	CTCAG	5 cut(s)	578, 745, 957, 1098, 1127
BseNI	ACTGG	2 cut(s)	698, 1102
BseSI	GKGCMC	1 cut(s)	957
BseXI	GCAGC	6 cut(s)	322, 394, 494, 730, 1009, 1052
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	4 cut(s)	544, 752, 772, 1253
BshVI	ATCGAT	1 cut(s)	453
BsiHKAI	GWGCWC	2 cut(s)	739, 957
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	4 cut(s)	149, 644, 1250, 1269
BsmAI	GTCTC	3 cut(s)	583, 734, 1103
BsnI	GGCC	4 cut(s)	544, 752, 772, 1253
Bso31I	GGTCTC	1 cut(s)	734
BsoBI	CYCGRG	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	739, 957
Bsp143I	GATC	7 cut(s)	156, 179, 594, 676, 787, 1046, 1242
BspACI	CCGC	1 cut(s)	1057
BspANI	GGCC	4 cut(s)	544, 752, 772, 1253
BspCNI	CTCAG	5 cut(s)	577, 744, 958, 1099, 1126
BspDI	ATCGAT	1 cut(s)	453
BspMAI	CTGCAG	1 cut(s)	720
BspPI	GGATC	4 cut(s)	589, 684, 795, 1237
BspQI	GCTCTTC	1 cut(s)	744
BspTNI	GGTCTC	1 cut(s)	734
BsrDI	GCAATG	2 cut(s)	924, 1157
BsrI	ACTGG	2 cut(s)	698, 1102
BssECI	CCNNGG	2 cut(s)	36, 1215
BssMI	GATC	7 cut(s)	156, 179, 594, 676, 787, 1046, 1242
BssSI	CACGAG	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	1215
Bst2BI	CACGAG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	8 cut(s)	89, 311, 512, 664, 818, 855, 880, 1127
Bst6I	CTCTTC	1 cut(s)	744
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstDEI	CTNAG	8 cut(s)	357, 564, 731, 966, 1107, 1113, 1188, 1284
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	7 cut(s)	159, 182, 597, 679, 790, 1049, 1245
BstMAI	GTCTC	3 cut(s)	583, 734, 1103
BstMBI	GATC	7 cut(s)	156, 179, 594, 676, 787, 1046, 1242
BstMWI	GCNNNNNNNGC	5 cut(s)	809, 926, 1028, 1037, 1156
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	2 cut(s)	597, 642
BstSFI	CTRYAG	2 cut(s)	225, 716
BstSLI	GKGCMC	1 cut(s)	957
BstV1I	GCAGC	6 cut(s)	322, 394, 494, 730, 1009, 1052
BstV2I	GAAGAC	2 cut(s)	851, 889
BstX2I	RGATCY	2 cut(s)	787, 1046
BstYI	RGATCY	2 cut(s)	787, 1046
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	4 cut(s)	544, 752, 772, 1253
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	36
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	5 cut(s)	316, 660, 705, 739, 1095
CaiI	CAGNNNCTG	1 cut(s)	832
Cfr13I	GGNCC	1 cut(s)	1074
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	4 cut(s)	174, 245, 871, 1185
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	5 cut(s)	556, 623, 745, 809, 1120
CviQI	GTAC	4 cut(s)	174, 245, 871, 1185
DdeI	CTNAG	8 cut(s)	357, 564, 731, 966, 1107, 1113, 1188, 1284
DpnI	GATC	7 cut(s)	158, 181, 596, 678, 789, 1048, 1244
DpnII	GATC	7 cut(s)	156, 179, 594, 676, 787, 1046, 1242
DrdI	GACNNNNNNGTC	1 cut(s)	853
DseDI	GACNNNNNNGTC	1 cut(s)	853
EaeI	YGGCCR	3 cut(s)	750, 770, 1251
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
EciI	GGCGGA	1 cut(s)	1046
Eco130I	CCWWGG	1 cut(s)	1215
Eco31I	GGTCTC	1 cut(s)	734
Eco32I	GATATC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	1074
Eco88I	CYCGRG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	597
EcoRV	GATATC	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	1215
EcoT22I	ATGCAT	2 cut(s)	814, 984
ErhI	CCWWGG	1 cut(s)	1215
FaeI	CATG	5 cut(s)	559, 626, 748, 812, 1123
FatI	CATG	5 cut(s)	555, 622, 744, 808, 1119
FauNDI	CATATG	1 cut(s)	1070
FblI	GTMKAC	2 cut(s)	285, 857
Fnu4HI	GCNGC	6 cut(s)	336, 408, 483, 719, 1023, 1041
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	6 cut(s)	336, 408, 483, 719, 1023, 1041
FspBI	CTAG	3 cut(s)	396, 791, 902
GluI	GCNGC	6 cut(s)	336, 408, 483, 719, 1023, 1041
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	4 cut(s)	544, 752, 772, 1253
HapII	CCGG	4 cut(s)	149, 644, 1250, 1269
Hin1II	CATG	5 cut(s)	559, 626, 748, 812, 1123
HincII	GTYRAC	2 cut(s)	667, 1266
HindII	GTYRAC	2 cut(s)	667, 1266
HindIII	AAGCTT	2 cut(s)	918, 1257
HinfI	GANTC	6 cut(s)	455, 630, 829, 886, 1111, 1277
HpaI	GTTAAC	1 cut(s)	667
HpaII	CCGG	4 cut(s)	149, 644, 1250, 1269
HphI	GGTGA	2 cut(s)	113, 847
Hpy166II	GTNNAC	6 cut(s)	176, 286, 667, 858, 955, 1266
Hpy188I	TCNGA	4 cut(s)	307, 629, 885, 1108
Hpy188III	TCNNGA	3 cut(s)	232, 341, 674
Hpy8I	GTNNAC	6 cut(s)	176, 286, 667, 858, 955, 1266
HpyAV	CCTTC	2 cut(s)	343, 1163
HpyCH4III	ACNGT	8 cut(s)	89, 311, 512, 664, 818, 855, 880, 1127
HpyCH4IV	ACGT	2 cut(s)	69, 288
HpyCH4V	TGCA	9 cut(s)	622, 718, 803, 812, 929, 955, 982, 1031, 1130
HpyF10VI	GCNNNNNNNGC	5 cut(s)	809, 926, 1028, 1037, 1156
HpyF3I	CTNAG	8 cut(s)	357, 564, 731, 966, 1107, 1113, 1188, 1284
HpySE526I	ACGT	2 cut(s)	69, 288
Hsp92II	CATG	5 cut(s)	559, 626, 748, 812, 1123
KspAI	GTTAAC	1 cut(s)	667
Kzo9I	GATC	7 cut(s)	156, 179, 594, 676, 787, 1046, 1242
LguI	GCTCTTC	1 cut(s)	744
LmnI	GCTCC	1 cut(s)	1193
Lsp1109I	GCAGC	6 cut(s)	322, 394, 494, 730, 1009, 1052
LweI	GCATC	2 cut(s)	569, 1099
MaeI	CTAG	3 cut(s)	396, 791, 902
MaeII	ACGT	2 cut(s)	69, 288
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	7 cut(s)	158, 181, 596, 678, 789, 1048, 1244
MboI	GATC	7 cut(s)	156, 179, 594, 676, 787, 1046, 1242
MflI	RGATCY	2 cut(s)	787, 1046
MhlI	GDGCHC	2 cut(s)	739, 957
MlsI	TGGCCA	1 cut(s)	772
MluCI	AATT	2 cut(s)	127, 765
MluNI	TGGCCA	1 cut(s)	772
MlyI	GAGTC	2 cut(s)	880, 1105
MmeI	TCCRAC	1 cut(s)	908
Mox20I	TGGCCA	1 cut(s)	772
Mph1103I	ATGCAT	2 cut(s)	814, 984
MscI	TGGCCA	1 cut(s)	772
MseI	TTAA	3 cut(s)	576, 666, 693
MslI	CAYNNNNRTG	1 cut(s)	865
Msp20I	TGGCCA	1 cut(s)	772
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	4 cut(s)	149, 644, 1250, 1269
MspR9I	CCNGG	2 cut(s)	599, 644
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	5 cut(s)	809, 926, 1028, 1037, 1156
NciI	CCSGG	1 cut(s)	644
NdeI	CATATG	1 cut(s)	1070
NdeII	GATC	7 cut(s)	156, 179, 594, 676, 787, 1046, 1242
NlaIII	CATG	5 cut(s)	559, 626, 748, 812, 1123
NmuCI	GTSAC	1 cut(s)	818
NsiI	ATGCAT	2 cut(s)	814, 984
NspI	RCATGY	1 cut(s)	626
OliI	CACNNNNGTG	1 cut(s)	865
PaeR7I	CTCGAG	1 cut(s)	339
PciSI	GCTCTTC	1 cut(s)	744
PfeI	GAWTC	4 cut(s)	455, 630, 829, 1277
PkrI	GCNGC	6 cut(s)	337, 409, 484, 720, 1024, 1042
PleI	GAGTC	2 cut(s)	880, 1105
PpsI	GAGTC	2 cut(s)	880, 1105
PshBI	ATTAAT	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	597
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	1074
PstI	CTGCAG	1 cut(s)	720
PstNI	CAGNNNCTG	1 cut(s)	832
PsuI	RGATCY	2 cut(s)	787, 1046
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	4 cut(s)	175, 246, 872, 1186
RsaNI	GTAC	4 cut(s)	174, 245, 871, 1185
RseI	CAYNNNNRTG	1 cut(s)	865
SapI	GCTCTTC	1 cut(s)	744
SaqAI	TTAA	3 cut(s)	576, 666, 693
SatI	GCNGC	6 cut(s)	336, 408, 483, 719, 1023, 1041
Sau3AI	GATC	7 cut(s)	156, 179, 594, 676, 787, 1046, 1242
Sau96I	GGNCC	1 cut(s)	1074
ScaI	AGTACT	1 cut(s)	1186
SchI	GAGTC	2 cut(s)	880, 1105
ScrFI	CCNGG	2 cut(s)	599, 644
SduI	GDGCHC	2 cut(s)	739, 957
SfaNI	GCATC	2 cut(s)	569, 1099
SfcI	CTRYAG	2 cut(s)	225, 716
Sfr274I	CTCGAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	1074
SlaI	CTCGAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	865
SmlI	CTYRAG	3 cut(s)	339, 863, 1085
SmoI	CTYRAG	3 cut(s)	339, 863, 1085
Sse9I	AATT	2 cut(s)	127, 765
SsiI	CCGC	1 cut(s)	1057
SspMI	CTAG	3 cut(s)	396, 791, 902
StyD4I	CCNGG	2 cut(s)	597, 642
StyI	CCWWGG	1 cut(s)	1215
TaaI	ACNGT	8 cut(s)	89, 311, 512, 664, 818, 855, 880, 1127
TaiI	ACGT	2 cut(s)	72, 291
TaqI	TCGA	6 cut(s)	17, 121, 340, 453, 633, 706
TasI	AATT	2 cut(s)	127, 765
TatI	WGTACW	1 cut(s)	1184
TfiI	GAWTC	4 cut(s)	455, 630, 829, 1277
Tru1I	TTAA	3 cut(s)	576, 666, 693
Tru9I	TTAA	3 cut(s)	576, 666, 693
TscAI	CASTG	5 cut(s)	316, 667, 705, 739, 1102
TseFI	GTSAC	1 cut(s)	818
TseI	GCWGC	6 cut(s)	335, 407, 482, 718, 1022, 1040
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	4 cut(s)	330, 594, 774, 901
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	5 cut(s)	316, 667, 705, 739, 1102
VneI	GTGCAC	1 cut(s)	953
VpaK11BI	GGWCC	1 cut(s)	1074
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	1 cut(s)	765
XceI	RCATGY	1 cut(s)	626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XhoI	CTCGAG	1 cut(s)	339
XmiI	GTMKAC	2 cut(s)	285, 857
XspI	CTAG	3 cut(s)	396, 791, 902
ZrmI	AGTACT	1 cut(s)	1186
Zsp2I	ATGCAT	2 cut(s)	814, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.