RH6CG063400

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0005966
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG063400.1

Sequence Viewer

Length: 1353 bp
ATGGCTTCGAGAGTCGTTGATCAACAACAAGCCAGAGGTATGGCAGTGGCCGGAGTAGGAGTTAAGCCACAGAAGAAGAACGCTGTGGCCGACGGGAGAAACCGAAAACCACTGGGTGAGATTGGTAACCAGCAACTTGTTCGAGGAGTTGAGATCAAGCCTAATCGCCCCATAACAAGGAACTTCCGGGCTCAATTACTAGCTAATGCACAGGCTGCGGCAGTTATTGAGAACAACAACAAGAAGCAAGTCTGTGCGAACGTGAATGAACTTGTGGCGGTTAAAAGGGATGAGGCACCCAAGCCAGTGCAGAAGAAAGTAGTTAATATCAAGTTGAAGCCCAAGGAGATAATCGAAATCAGCCCGGACACAGAGGAGGGCTTGATTGAAAAGGCTAAGCATGAGAAGAAGAAAGAAGGAGCTTCAAAGAAGAAAGCAGCACCAACTCTCACTTCAGTCCTTACTGCTAGAAGCAAGGCTGCTTGTGGTTTGACTAATAAACCAAAGGAACTGATTGTTGATATTGATGCCAAAGATGCTGGTAATGACTTGGCTGCTGTTGAATATGTTGAGGACATGTACAAGTTCTATAAGCTTGTTGAGAATGAGAACCGCCCTCATGACTATATGGACTCACAGCCTGAGATTAACGAAAACATGAGAGCAATTCTGATGGACTGGCTGGTAGTTGTTCACAGCAAGTTCGAGCTTTCTCCGGAGACTTTCTACCTAACCACCAACATAATTGATCGGTTCCTTTCGGTCAAGACTGTGCCAAGGAGGGAGTTGCAATTAGTTGGCATCAGTGCCATGCTAATCGCCTCAAAGTATGAAGAGATCTGGCCCCCTCAGGTCGATGACTTTGTGAGCCTTTCGGACAATGCTTACAGTAATGTGCAGATATTGGTGATGGAGAAAATGATACTGGGCAAGTTGGAATGGACCTTGACTGTGCCTACACTCTATGTGTTCCTAGTCCGGTTCATTAAAGCAGCAATTCCAGATGAACAAATGGAAAACCTTGTCTACTTTCTAGCTGAATTGGGTATGATGCATTATGGCATGCTTATGTACTGCCCTTCAATGGTTGCTGCCTCTGCAGTCTATGCTGCTAAATGCACTCTGAACAAGAGCCCTGCTTGGTGTGACACACTCAAGCTTCACACTGGTTTCTCAGAATCTCAACTAATTGATTGTTCCAAAGTGTTGGTGAGCTTGCACGCAAAGGCTGCGAAAAACAAGCTTCAGGGTGTGTTCAAGAAGTACTTGAGTTCTGAGAGAGGTGCTGTGGCTTCGCTGACTCCAGCCAAAGCGCTTTTGCCACCAGCCAAAGCTTCGGGAGGGTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

450

Amino Acids

49.83

Weight (kDa)

9.17

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 192 - 316 1e-48 Cyclin, N-terminal domain
Cyclin_C PF02984 319 - 435 5.2e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 295
AccI GTMKAC 1 cut(s) 1026
AccIII TCCGGA 1 cut(s) 715
AciI CCGC 3 cut(s) 218, 278, 613
AcoI YGGCCR 2 cut(s) 48, 87
AcuI CTGAAG 2 cut(s) 438, 1229
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 3 cut(s) 581, 1073, 1265
AfeI AGCGCT 1 cut(s) 1314
AfiI CCNNNNNNNGG 2 cut(s) 177, 1084
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 6 cut(s) 337, 389, 426, 563, 1083, 1258
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AluBI AGCT 9 cut(s) 203, 422, 595, 709, 1037, 1159, 1215, 1243, 1334
AluI AGCT 9 cut(s) 203, 422, 595, 709, 1037, 1159, 1215, 1243, 1334
Alw26I GTCTC 1 cut(s) 713
Aor13HI TCCGGA 1 cut(s) 715
Aor51HI AGCGCT 1 cut(s) 1314
AoxI GGCC 3 cut(s) 48, 87, 842
ApeKI GCWGC 8 cut(s) 215, 437, 479, 554, 992, 1091, 1109, 1229
AspLEI GCGC 1 cut(s) 1315
AspS9I GGNCC 2 cut(s) 843, 942
AsuC2I CCSGG 2 cut(s) 188, 365
AsuHPI GGTGA 3 cut(s) 128, 919, 1222
AvaII GGWCC 1 cut(s) 942
AxyI CCTNAGG 1 cut(s) 849
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 193, 1136
BbsI GAAGAC 1 cut(s) 1338
BbvI GCAGC 8 cut(s) 202, 449, 466, 541, 1004, 1078, 1096, 1216
BccI CCATC 2 cut(s) 667, 904
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 2 cut(s) 188, 365
BcoDI GTCTC 1 cut(s) 713
BfaI CTAG 4 cut(s) 200, 468, 974, 1034
BfmI CTRYAG 1 cut(s) 1098
BfoI RGCGCY 1 cut(s) 1316
BglII AGATCT 1 cut(s) 837
BisI GCNGC 9 cut(s) 216, 219, 438, 480, 555, 993, 1092, 1110, 1230
BlpI GCTNAGC 1 cut(s) 396
BlsI GCNGC 9 cut(s) 217, 220, 439, 481, 556, 994, 1093, 1111, 1231
BmcAI AGTACT 1 cut(s) 1265
Bme1390I CCNGG 2 cut(s) 188, 365
Bme18I GGWCC 1 cut(s) 942
BmgT120I GGNCC 2 cut(s) 843, 942
BmiI GGNNCC 3 cut(s) 297, 755, 845
BmrFI CCNGG 2 cut(s) 188, 365
BmrI ACTGGG 2 cut(s) 122, 935
BmsI GCATC 4 cut(s) 517, 526, 810, 1041
BmuI ACTGGG 2 cut(s) 122, 935
BpiI GAAGAC 1 cut(s) 1338
BpmI CTGGAG 1 cut(s) 1287
Bpu1102I GCTNAGC 1 cut(s) 396
BpuEI CTTGAG 2 cut(s) 1139, 1288
BpuMI CCSGG 2 cut(s) 188, 365
BsaJI CCNNGG 2 cut(s) 342, 776
BsaWI WCCGGW 2 cut(s) 715, 978
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 1084
Bse1I ACTGG 5 cut(s) 117, 305, 683, 930, 1171
Bse21I CCTNAGG 1 cut(s) 849
BseAI TCCGGA 1 cut(s) 715
BseDI CCNNGG 2 cut(s) 342, 776
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 2 cut(s) 177, 1084
BseMII CTCAG 4 cut(s) 633, 863, 1188, 1266
BseNI ACTGG 5 cut(s) 117, 305, 683, 930, 1171
BseRI GAGGAG 2 cut(s) 159, 389
BseXI GCAGC 8 cut(s) 202, 449, 466, 541, 1004, 1078, 1096, 1216
BsgI GTGCAG 2 cut(s) 329, 917
BshFI GGCC 3 cut(s) 50, 89, 844
BshNI GGYRCC 1 cut(s) 295
BsiSI CCGG 5 cut(s) 51, 187, 365, 716, 979
BslI CCNNNNNNNGG 2 cut(s) 177, 1084
BsmAI GTCTC 1 cut(s) 713
BsnI GGCC 3 cut(s) 50, 89, 844
Bsp1286I GDGCHC 2 cut(s) 193, 1136
Bsp13I TCCGGA 1 cut(s) 715
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 4 cut(s) 19, 153, 748, 837
Bsp1720I GCTNAGC 1 cut(s) 396
BspACI CCGC 3 cut(s) 218, 278, 613
BspANI GGCC 3 cut(s) 50, 89, 844
BspCNI CTCAG 4 cut(s) 634, 862, 1187, 1267
BspEI TCCGGA 1 cut(s) 715
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 3 cut(s) 297, 755, 845
BspMAI CTGCAG 1 cut(s) 1102
BspT107I GGYRCC 1 cut(s) 295
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 5 cut(s) 117, 305, 683, 930, 1171
BssECI CCNNGG 2 cut(s) 342, 776
BssMI GATC 4 cut(s) 19, 153, 748, 837
BssT1I CCWWGG 2 cut(s) 342, 776
Bst4CI ACNGT 3 cut(s) 772, 890, 952
Bst6I CTCTTC 1 cut(s) 828
BstAPI GCANNNNNTGC 3 cut(s) 215, 1106, 1229
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 1064, 1217, 1221
BstDEI CTNAG 5 cut(s) 396, 642, 849, 1174, 1275
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 1316
BstHHI GCGC 1 cut(s) 1315
BstKTI GATC 4 cut(s) 22, 156, 751, 840
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 4 cut(s) 19, 153, 748, 837
BstMWI GCNNNNNNNGC 5 cut(s) 215, 536, 1097, 1106, 1229
BstNSI RCATGY 2 cut(s) 580, 1066
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 186, 363
BstSFI CTRYAG 1 cut(s) 1098
BstV1I GCAGC 8 cut(s) 202, 449, 466, 541, 1004, 1078, 1096, 1216
BstV2I GAAGAC 1 cut(s) 1338
BstX2I RGATCY 1 cut(s) 837
BstXI CCANNNNNNTGG 2 cut(s) 40, 1207
BstYI RGATCY 1 cut(s) 837
Bsu36I CCTNAGG 1 cut(s) 849
BsuRI GGCC 3 cut(s) 50, 89, 844
BtsCI GGATG 1 cut(s) 295
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 5 cut(s) 51, 110, 312, 811, 1164
Cac8I GCNNGC 3 cut(s) 1064, 1217, 1221
CciI TCATGA 1 cut(s) 619
CfoI GCGC 1 cut(s) 1315
Cfr13I GGNCC 2 cut(s) 843, 942
Csp6I GTAC 3 cut(s) 580, 1072, 1264
CviAII CATG 6 cut(s) 401, 577, 620, 658, 811, 1063
CviQI GTAC 3 cut(s) 580, 1072, 1264
DdeI CTNAG 5 cut(s) 396, 642, 849, 1174, 1275
DpnI GATC 4 cut(s) 21, 155, 750, 839
DpnII GATC 4 cut(s) 19, 153, 748, 837
DraIII CACNNNGTG 1 cut(s) 116
EaeI YGGCCR 2 cut(s) 48, 87
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Eco130I CCWWGG 2 cut(s) 342, 776
Eco24I GRGCYC 2 cut(s) 193, 1136
Eco47I GGWCC 1 cut(s) 942
Eco47III AGCGCT 1 cut(s) 1314
Eco57I CTGAAG 2 cut(s) 438, 1229
Eco81I CCTNAGG 1 cut(s) 849
Eco91I GGTNACC 1 cut(s) 125
EcoO65I GGTNACC 1 cut(s) 125
EcoT14I CCWWGG 2 cut(s) 342, 776
EcoT22I ATGCAT 1 cut(s) 1056
EcoT38I GRGCYC 2 cut(s) 193, 1136
ErhI CCWWGG 2 cut(s) 342, 776
FaeI CATG 6 cut(s) 404, 580, 623, 661, 814, 1066
FalI AAGNNNNNCTT 2 cut(s) 1250, 1282
FatI CATG 6 cut(s) 400, 576, 619, 657, 810, 1062
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 1 cut(s) 1026
Fnu4HI GCNGC 9 cut(s) 216, 219, 438, 480, 555, 993, 1092, 1110, 1230
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 2 cut(s) 193, 1136
Fsp4HI GCNGC 9 cut(s) 216, 219, 438, 480, 555, 993, 1092, 1110, 1230
FspBI CTAG 4 cut(s) 200, 468, 974, 1034
GlaI GCGC 1 cut(s) 1314
GluI GCNGC 9 cut(s) 216, 219, 438, 480, 555, 993, 1092, 1110, 1230
GsuI CTGGAG 1 cut(s) 1287
HaeII RGCGCY 1 cut(s) 1316
HaeIII GGCC 3 cut(s) 50, 89, 844
HapII CCGG 5 cut(s) 51, 187, 365, 716, 979
HhaI GCGC 1 cut(s) 1315
Hin1II CATG 6 cut(s) 404, 580, 623, 661, 814, 1066
Hin6I GCGC 1 cut(s) 1313
HinP1I GCGC 1 cut(s) 1313
HindIII AAGCTT 4 cut(s) 593, 1157, 1241, 1332
HinfI GANTC 4 cut(s) 12, 632, 1178, 1300
HpaII CCGG 5 cut(s) 51, 187, 365, 716, 979
HphI GGTGA 3 cut(s) 128, 919, 1222
Hpy166II GTNNAC 2 cut(s) 694, 1027
Hpy188I TCNGA 5 cut(s) 672, 877, 1125, 1177, 1276
Hpy188III TCNNGA 7 cut(s) 9, 620, 716, 766, 1001, 1258, 1338
Hpy8I GTNNAC 2 cut(s) 694, 1027
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 410, 1089
HpyCH4III ACNGT 3 cut(s) 772, 890, 952
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 8 cut(s) 209, 310, 790, 898, 1054, 1100, 1119, 1219
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 536, 1097, 1106, 1229
HpyF3I CTNAG 5 cut(s) 396, 642, 849, 1174, 1275
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 6 cut(s) 404, 580, 623, 661, 814, 1066
HspAI GCGC 1 cut(s) 1313
Kpn2I TCCGGA 1 cut(s) 715
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 4 cut(s) 19, 153, 748, 837
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 8 cut(s) 202, 449, 466, 541, 1004, 1078, 1096, 1216
LweI GCATC 4 cut(s) 517, 526, 810, 1041
MaeI CTAG 4 cut(s) 200, 468, 974, 1034
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 125, 1145
MalI GATC 4 cut(s) 21, 155, 750, 839
MboI GATC 4 cut(s) 19, 153, 748, 837
MboII GAAGA 8 cut(s) 85, 88, 325, 418, 421, 442, 845, 1338
MflI RGATCY 1 cut(s) 837
MhlI GDGCHC 2 cut(s) 193, 1136
MluCI AATT 7 cut(s) 194, 666, 744, 791, 996, 1040, 1188
MlyI GAGTC 3 cut(s) 21, 626, 1294
MmeI TCCRAC 1 cut(s) 915
Mph1103I ATGCAT 1 cut(s) 1056
MroI TCCGGA 1 cut(s) 715
MseI TTAA 5 cut(s) 63, 282, 324, 648, 987
MslI CAYNNNNRTG 1 cut(s) 1067
MspI CCGG 5 cut(s) 51, 187, 365, 716, 979
MspR9I CCNGG 2 cut(s) 188, 365
MwoI GCNNNNNNNGC 5 cut(s) 215, 536, 1097, 1106, 1229
NciI CCSGG 2 cut(s) 188, 365
NdeII GATC 4 cut(s) 19, 153, 748, 837
NlaIII CATG 6 cut(s) 404, 580, 623, 661, 814, 1066
NlaIV GGNNCC 3 cut(s) 297, 755, 845
NmuCI GTSAC 1 cut(s) 1145
NsiI ATGCAT 1 cut(s) 1056
NspI RCATGY 2 cut(s) 580, 1066
PaeI GCATGC 1 cut(s) 1066
PagI TCATGA 1 cut(s) 619
PciI ACATGT 1 cut(s) 576
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 1178
PkrI GCNGC 9 cut(s) 217, 220, 439, 481, 556, 994, 1093, 1111, 1231
PleI GAGTC 3 cut(s) 20, 626, 1294
PpsI GAGTC 3 cut(s) 20, 626, 1294
PscI ACATGT 1 cut(s) 576
PspEI GGTNACC 1 cut(s) 125
PspN4I GGNNCC 3 cut(s) 297, 755, 845
PspPI GGNCC 2 cut(s) 843, 942
PstI CTGCAG 1 cut(s) 1102
PsuI RGATCY 1 cut(s) 837
RsaI GTAC 3 cut(s) 581, 1073, 1265
RsaNI GTAC 3 cut(s) 580, 1072, 1264
RseI CAYNNNNRTG 1 cut(s) 1067
SaqAI TTAA 5 cut(s) 63, 282, 324, 648, 987
SatI GCNGC 9 cut(s) 216, 219, 438, 480, 555, 993, 1092, 1110, 1230
Sau3AI GATC 4 cut(s) 19, 153, 748, 837
Sau96I GGNCC 2 cut(s) 843, 942
ScaI AGTACT 1 cut(s) 1265
SchI GAGTC 3 cut(s) 21, 626, 1294
ScrFI CCNGG 2 cut(s) 188, 365
SduI GDGCHC 2 cut(s) 193, 1136
SfaNI GCATC 4 cut(s) 517, 526, 810, 1041
SfcI CTRYAG 1 cut(s) 1098
SinI GGWCC 1 cut(s) 942
SmiMI CAYNNNNRTG 1 cut(s) 1067
SmlI CTYRAG 2 cut(s) 1154, 1267
SmoI CTYRAG 2 cut(s) 1154, 1267
SphI GCATGC 1 cut(s) 1066
Sse9I AATT 7 cut(s) 194, 666, 744, 791, 996, 1040, 1188
SsiI CCGC 3 cut(s) 218, 278, 613
SspMI CTAG 4 cut(s) 200, 468, 974, 1034
StyD4I CCNGG 2 cut(s) 186, 363
StyI CCWWGG 2 cut(s) 342, 776
TaaI ACNGT 3 cut(s) 772, 890, 952
TaiI ACGT 1 cut(s) 264
TaqI TCGA 5 cut(s) 8, 142, 354, 705, 855
TaqII GACCGA 1 cut(s) 751
TasI AATT 7 cut(s) 194, 666, 744, 791, 996, 1040, 1188
TatI WGTACW 3 cut(s) 579, 1071, 1263
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 1178
Tru1I TTAA 5 cut(s) 63, 282, 324, 648, 987
Tru9I TTAA 5 cut(s) 63, 282, 324, 648, 987
TscAI CASTG 5 cut(s) 51, 117, 312, 811, 1171
TseFI GTSAC 1 cut(s) 1145
TseI GCWGC 8 cut(s) 215, 437, 479, 554, 992, 1091, 1109, 1229
Tsp45I GTSAC 1 cut(s) 1145
TspDTI ATGAA 5 cut(s) 282, 846, 973, 1020, 1338
TspRI CASTG 5 cut(s) 51, 117, 312, 811, 1171
VpaK11BI GGWCC 1 cut(s) 942
XceI RCATGY 2 cut(s) 580, 1066
XmiI GTMKAC 1 cut(s) 1026
XspI CTAG 4 cut(s) 200, 468, 974, 1034
ZrmI AGTACT 1 cut(s) 1265
Zsp2I ATGCAT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.