Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008333

Physical Location & Seq

Genomic Coordinates Forward (+)

12890404 .. 12892955

Gene Structure 2552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G35190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAGAATCACACGACCATGAAAGTTTCATCTCTTAATTGTATCGATCTAGCCAACGACGATCTTAATCATTCTGTTGTTTCCCTCAAACAGGCATGTTTGGATTGTGGATTTTTCTATGTGATCAATCATGGGATAAGCGAAGAGTTCATGGACGATGTTTTCGAGCAGAGCAAGAAGCTTTTTGCTCTTCCTTTAGAAGAAAAGATGAAAGTGTTGAGAAACGAAAAGCATCGAGGCTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATCCTCATTGGGATAAGCCATTCTATGGTCCTAACCCTTGGCCTGATGCTGATGTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAGAAGCATTGAGGGTTTCTATGGCTATTGCAAGACTTTTGGCGTTAGCACTTGACTTGGATGTGGGATACTTTGATAGGACGGAGATGCTTGGAAAACCTATTGCAACTATGCGACTGTTGCGGTATCAAGGGATTTCTGATCCTTCGAAAGGAATATATGCATGTGGAGCACATTCTGACTTCGGAATGATGACTCTGTTAGCCACTGATGGTGTAATGGGACTCCAGATATGCAAAGATAAGAACGCGATGCCGCAGAAGTGGGAATATGTACCGCCGATTAAAGGAGCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAAATCCACGTTGCATCGGGTTCTTGGAAACGGTCAGGAACGATATTCTATTCCATTCTTTGTGGAACCAAATCATGACTGTCTCGTGGAGTGTCTCCCAACCTGCAAGTCGGAAAGCGAGCTTCCTAAATATCCACCGATCAAATGTTCGACATACCTCACCCAGCGTTACGAGGAAACACATGCGAATTTAAGCATCTACCACCAACAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

329

Amino Acids

37.63

Weight (kDa)

5.47

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	13 - 128	2.9e-34	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	182 - 281	2.5e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35190 AT1G35190
fragaria_vesca	FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010
malus_domestica	MD02G1064900.v1.1
prunus_persica	Prupe.7G221000_v2.0.a1 Prupe.7G221000_v2.0.a1
pyrus_communis	pycom02g05100 pycom03g18760 pycom15g17490
rosa_chinensis	RchiOBHm_Chr2g0091751
rosa_laevigata	RLG00000016249
rosa_multiflora	Rmu_sc0000897.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149770
rosa_rugosa	Rorug02G0020300 Rorug02G0020400 Rorug02G0020500
rosa_samantha	Rh2CG065900 Rh2DG064400
rosa_wichuraiana	Rw2G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	884
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccII	CGCG	1 cut(s)	680
AciI	CCGC	3 cut(s)	553, 686, 707
AclI	AACGTT	1 cut(s)	754
AclWI	GGATC	4 cut(s)	263, 300, 332, 566
AcsI	RAATTY	1 cut(s)	961
AfaI	GTAC	1 cut(s)	705
AfiI	CCNNNNNNNGG	4 cut(s)	91, 362, 581, 716
AgsI	TTSAA	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	397
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	2 cut(s)	181, 895
AluI	AGCT	2 cut(s)	181, 895
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	2 cut(s)	860, 872
AlwI	GGATC	4 cut(s)	263, 300, 332, 566
AoxI	GGCC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	961
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	925
AsuII	TTCGAA	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	365
BauI	CACGAG	1 cut(s)	857
Bbv12I	GWGCWC	1 cut(s)	604
BccI	CCATC	1 cut(s)	635
BciT130I	CCWGG	1 cut(s)	399
BciVI	GTATCC	1 cut(s)	491
BclI	TGATCA	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	860, 872
BfaI	CTAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	884
BfuI	GTATCC	1 cut(s)	491
BisI	GCNGC	1 cut(s)	686
BlsI	GCNGC	1 cut(s)	687
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	840
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	6 cut(s)	241, 373, 507, 672, 796, 978
BpmI	CTGGAG	1 cut(s)	641
Bpu14I	TTCGAA	1 cut(s)	578
Bsa29I	ATCGAT	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 362, 581, 716
Bse3DI	GCAATG	1 cut(s)	769
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	399
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	496
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	4 cut(s)	91, 362, 581, 716
BseMI	GCAATG	1 cut(s)	769
BseYI	CCCAGC	1 cut(s)	936
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	604
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	4 cut(s)	91, 362, 581, 716
BsmAI	GTCTC	2 cut(s)	860, 872
BsmFI	GGGAC	1 cut(s)	666
BsnI	GGCC	1 cut(s)	379
Bsp119I	TTCGAA	1 cut(s)	578
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	8 cut(s)	46, 61, 123, 268, 292, 337, 571, 912
BspACI	CCGC	3 cut(s)	553, 686, 707
BspANI	GGCC	1 cut(s)	379
BspDI	ATCGAT	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	680
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	1 cut(s)	840
BspMI	ACCTGC	1 cut(s)	884
BspPI	GGATC	4 cut(s)	263, 300, 332, 566
BspQI	GCTCTTC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	769
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	8 cut(s)	46, 61, 123, 268, 292, 337, 571, 912
BssSI	CACGAG	1 cut(s)	857
BssT1I	CCWWGG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	857
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	3 cut(s)	549, 806, 854
Bst6I	CTCTTC	2 cut(s)	138, 195
BstBI	TTCGAA	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	893
BstENI	CCTNNNNNAGG	2 cut(s)	89, 579
BstF5I	GGATG	1 cut(s)	496
BstFNI	CGCG	1 cut(s)	680
BstKTI	GATC	8 cut(s)	49, 64, 126, 271, 295, 340, 574, 915
BstMAI	GTCTC	2 cut(s)	860, 872
BstMBI	GATC	8 cut(s)	46, 61, 123, 268, 292, 337, 571, 912
BstMWI	GCNNNNNNNGC	2 cut(s)	550, 599
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	3 cut(s)	99, 597, 959
BstSCI	CCNGG	1 cut(s)	397
BstUI	CGCG	1 cut(s)	680
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
Bsu15I	ATCGAT	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	379
BsuTUI	ATCGAT	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	695
BtsCI	GGATG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	636
BveI	ACCTGC	1 cut(s)	884
Cac8I	GCNNGC	1 cut(s)	893
CciI	TCATGA	1 cut(s)	847
Cfr13I	GGNCC	1 cut(s)	365
ClaI	ATCGAT	1 cut(s)	45
CsiI	ACCWGGT	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	704
CviAII	CATG	8 cut(s)	19, 96, 131, 151, 594, 848, 956, 987
CviJI	RGCY	9 cut(s)	53, 181, 240, 355, 379, 455, 635, 768, 895
CviKI_1	RGCY	9 cut(s)	53, 181, 240, 355, 379, 455, 635, 768, 895
CviQI	GTAC	1 cut(s)	704
DpnI	GATC	8 cut(s)	48, 63, 125, 270, 294, 339, 573, 914
DpnII	GATC	8 cut(s)	46, 61, 123, 268, 292, 337, 571, 912
DraI	TTTAAA	1 cut(s)	775
Eam1104I	CTCTTC	2 cut(s)	138, 195
EarI	CTCTTC	2 cut(s)	138, 195
Eco130I	CCWWGG	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	365
EcoNI	CCTNNNNNAGG	2 cut(s)	89, 579
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	8 cut(s)	22, 99, 134, 154, 597, 851, 959, 990
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	8 cut(s)	18, 95, 130, 150, 593, 847, 955, 986
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	686
FokI	GGATG	1 cut(s)	503
Fsp4HI	GCNGC	1 cut(s)	686
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	686
GsaI	CCCAGC	1 cut(s)	940
GsuI	CTGGAG	1 cut(s)	641
HaeIII	GGCC	1 cut(s)	379
Hin1II	CATG	8 cut(s)	22, 99, 134, 154, 597, 851, 959, 990
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	5 cut(s)	7, 277, 625, 654, 733
HphI	GGTGA	1 cut(s)	925
Hpy188I	TCNGA	4 cut(s)	571, 610, 617, 886
Hpy188III	TCNNGA	5 cut(s)	254, 431, 658, 809, 848
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	585
HpyCH4III	ACNGT	3 cut(s)	549, 806, 854
HpyCH4IV	ACGT	2 cut(s)	754, 782
HpyCH4V	TGCA	6 cut(s)	461, 536, 593, 666, 787, 879
HpyF10VI	GCNNNNNNNGC	2 cut(s)	550, 599
HpySE526I	ACGT	2 cut(s)	754, 782
Hsp92II	CATG	8 cut(s)	22, 99, 134, 154, 597, 851, 959, 990
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	8 cut(s)	46, 61, 123, 268, 292, 337, 571, 912
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	3 cut(s)	599, 719, 759
LweI	GCATC	6 cut(s)	241, 373, 507, 672, 796, 978
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	2 cut(s)	754, 782
MaeIII	GTNAC	1 cut(s)	941
MalI	GATC	8 cut(s)	48, 63, 125, 270, 294, 339, 573, 914
MboI	GATC	8 cut(s)	46, 61, 123, 268, 292, 337, 571, 912
MboII	GAAGA	3 cut(s)	155, 182, 212
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	604
MluCI	AATT	3 cut(s)	37, 318, 961
MlyI	GAGTC	2 cut(s)	619, 648
MmeI	TCCRAC	2 cut(s)	737, 864
MnlI	CCTC	7 cut(s)	95, 230, 295, 351, 435, 940, 941
Mph1103I	ATGCAT	1 cut(s)	595
MseI	TTAA	5 cut(s)	36, 66, 714, 774, 965
MslI	CAYNNNNRTG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	2 cut(s)	550, 599
NdeII	GATC	8 cut(s)	46, 61, 123, 268, 292, 337, 571, 912
NlaIII	CATG	8 cut(s)	22, 99, 134, 154, 597, 851, 959, 990
NlaIV	GGNNCC	1 cut(s)	840
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	3 cut(s)	99, 597, 959
NspV	TTCGAA	1 cut(s)	578
PagI	TCATGA	1 cut(s)	847
PciSI	GCTCTTC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	7, 277, 733
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	687
PleI	GAGTC	2 cut(s)	619, 648
PpsI	GAGTC	2 cut(s)	619, 648
Psp1406I	AACGTT	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	936
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	840
PspPI	GGNCC	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	705
RsaNI	GTAC	1 cut(s)	704
RseI	CAYNNNNRTG	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	5 cut(s)	36, 66, 714, 774, 965
SatI	GCNGC	1 cut(s)	686
Sau3AI	GATC	8 cut(s)	46, 61, 123, 268, 292, 337, 571, 912
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	2 cut(s)	619, 648
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	604
SetI	ASST	9 cut(s)	183, 250, 400, 532, 757, 785, 878, 897, 933
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	6 cut(s)	241, 373, 507, 672, 796, 978
SfuI	TTCGAA	1 cut(s)	578
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	3 cut(s)	37, 318, 961
SsiI	CCGC	3 cut(s)	553, 686, 707
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	3 cut(s)	549, 806, 854
TaiI	ACGT	2 cut(s)	757, 785
TaqI	TCGA	5 cut(s)	45, 165, 235, 578, 923
TasI	AATT	3 cut(s)	37, 318, 961
TauI	GCSGC	1 cut(s)	688
TfiI	GAWTC	3 cut(s)	7, 277, 733
Tru1I	TTAA	5 cut(s)	36, 66, 714, 774, 965
Tru9I	TTAA	5 cut(s)	36, 66, 714, 774, 965
TscAI	CASTG	1 cut(s)	643
TspDTI	ATGAA	5 cut(s)	18, 35, 139, 224, 273
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	643
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	365
XagI	CCTNNNNNAGG	2 cut(s)	89, 579
XapI	RAATTY	1 cut(s)	961
XceI	RCATGY	3 cut(s)	99, 597, 959
XspI	CTAG	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.