Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008333

Physical Location & Seq

Genomic Coordinates Reverse (-)

3356912 .. 3359711

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05100.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCAACCCAAATCACAAACGGCGACGGAGTTGCCAGAGTCTCCGCCCTCAACTGCATCGATCCCTCGAGCCCCGACACCCACCAATCCGTCTCTTTACTCAAACAGGCGTGTTTGGATTGCGGGTTTTTCTACCTGGTGAATCATGGAATAAGCGAGGAGTTCATGGCGAAGGTGTTTGATCAGAGCAGGAGGCTTTTCGGGTTGCCATTGAGTGCAAAAATGGAGCTTTTGAGGAACAAGAATTACAGGGGATATACCCCTTCTCTCGACGAGCATCTCGATCATGAAAACCAAGTTCACGTAGGAGATTACAAGGAGGGGTATTACATAGGAGTTGAGCTACAAGAAGATGACCCAGAAGCTAAAAAGCCGTTTTATGGGCCTAATGTTTGGCCTGCTCCAGAAGTGTTGCCGGGGTGGAGGGAGACCATGGAGGATTATCATAGACAATGCTTGGAGGTGGCTAAGTCAGTTGGTAGGCTTGTGGCCCTTGCTCTTGATCTCGACATCCATTTCTTCGACAAACCAGAAATGCTTGGCGAGGCTATAGCAACACTGCGTTTACTACACTATGATGGTCAAGTTTCTGATCCAGCGAATGGAATTTTTGGAGCTGGAGCTCATTCGGACTTTGGTTTTATAACCCTATTGGCAACAGATGATGTTGCAGGTCTCCAAATATGCAAAGATAAGGATGCAAAACCTCAAATATGGGAATATGTACCACCAATAAAAGGTGCATTTATAGTGAATATTGGTGACATGCTGGAACGCTGGAGCAACGGCATTTTCAAGTCCACATTGCATAGAGTTGTAGGGAACGGTCAAGACAGATACTCTATCGTATACTTTATAGAACCAAGTCACGATTGTCTTGTTGAATGTTTGCCTACGTGCAAATCTGAAAATAACCCTCCCAAATTTCCCCCGATCTTGTGCCGCACTTACCTGAGCCAGCGCTATTACGACACTCACGCTGATCTGAATGTCTACACCGAACATAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

338

Amino Acids

38.02

Weight (kDa)

5.2

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35190 AT1G35190
fragaria_vesca	FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010
malus_domestica	MD02G1064900.v1.1
prunus_persica	Prupe.7G221000_v2.0.a1 Prupe.7G221000_v2.0.a1
pyrus_communis	pycom02g05100 pycom03g18760 pycom15g17490
rosa_chinensis	RchiOBHm_Chr2g0091751
rosa_laevigata	RLG00000016249
rosa_multiflora	Rmu_sc0000897.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149770
rosa_rugosa	Rorug02G0020300 Rorug02G0020400 Rorug02G0020500
rosa_samantha	Rh2CG065900 Rh2DG064400
rosa_wichuraiana	Rw2G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	662
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccI	GTMKAC	2 cut(s)	849, 993
AciI	CCGC	3 cut(s)	45, 123, 943
AclWI	GGATC	2 cut(s)	56, 587
AcsI	RAATTY	2 cut(s)	606, 923
AfaI	GTAC	1 cut(s)	726
AfeI	AGCGCT	1 cut(s)	962
AfiI	CCNNNNNNNGG	3 cut(s)	380, 602, 737
AgsI	TTSAA	2 cut(s)	796, 884
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	5 cut(s)	229, 343, 365, 617, 623
AluI	AGCT	5 cut(s)	229, 343, 365, 617, 623
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	4 cut(s)	46, 97, 422, 680
AlwI	GGATC	2 cut(s)	56, 587
Ama87I	CYCGRG	1 cut(s)	67
Aor51HI	AGCGCT	1 cut(s)	962
AoxI	GGCC	3 cut(s)	383, 395, 489
ApoI	RAATTY	2 cut(s)	606, 923
AspLEI	GCGC	1 cut(s)	963
AspS9I	GGNCC	2 cut(s)	383, 490
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	2 cut(s)	151, 773
AvaI	CYCGRG	1 cut(s)	67
BanII	GRGCYC	2 cut(s)	74, 625
Bbv12I	GWGCWC	1 cut(s)	625
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	3 cut(s)	37, 358, 802
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	4 cut(s)	46, 97, 422, 680
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	964
BfuAI	ACCTGC	1 cut(s)	662
BisI	GCNGC	1 cut(s)	943
BlsI	GCNGC	1 cut(s)	944
Bme1390I	CCNGG	2 cut(s)	137, 417
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	383, 490
BmrFI	CCNGG	2 cut(s)	137, 417
BmsI	GCATC	3 cut(s)	66, 286, 688
BpmI	CTGGAG	3 cut(s)	387, 639, 799
Bpu10I	CCTNAGC	1 cut(s)	953
BpuMI	CCSGG	1 cut(s)	417
Bsa29I	ATCGAT	1 cut(s)	60
BsaAI	YACGTR	2 cut(s)	304, 897
BsaI	GGTCTC	2 cut(s)	422, 680
BsaJI	CCNNGG	2 cut(s)	416, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	380, 602, 737
Bse3DI	GCAATG	1 cut(s)	803
BseBI	CCWGG	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	416, 432
BseGI	GGATG	2 cut(s)	510, 703
BseLI	CCNNNNNNNGG	3 cut(s)	380, 602, 737
BseMI	GCAATG	1 cut(s)	803
BseMII	CTCAG	1 cut(s)	944
BseRI	GAGGAG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	385, 397, 491
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	625
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	3 cut(s)	380, 602, 737
BsmAI	GTCTC	4 cut(s)	46, 97, 422, 680
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	3 cut(s)	385, 397, 491
Bso31I	GGTCTC	2 cut(s)	422, 680
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	74, 625
Bsp143I	GATC	7 cut(s)	61, 181, 283, 502, 592, 933, 982
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	3 cut(s)	45, 123, 943
BspANI	GGCC	3 cut(s)	385, 397, 491
BspCNI	CTCAG	1 cut(s)	945
BspDI	ATCGAT	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	286
BspMI	ACCTGC	1 cut(s)	662
BspPI	GGATC	2 cut(s)	56, 587
BspTNI	GGTCTC	2 cut(s)	422, 680
BsrDI	GCAATG	1 cut(s)	803
BssECI	CCNNGG	2 cut(s)	416, 432
BssMI	GATC	7 cut(s)	61, 181, 283, 502, 592, 933, 982
BssNAI	GTATAC	1 cut(s)	850
BssT1I	CCWWGG	1 cut(s)	432
Bst1107I	GTATAC	1 cut(s)	850
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	827
BstBAI	YACGTR	2 cut(s)	304, 897
BstC8I	GCNNGC	2 cut(s)	399, 959
BstDEI	CTNAG	2 cut(s)	468, 953
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	510, 703
BstH2I	RGCGCY	1 cut(s)	964
BstHHI	GCGC	1 cut(s)	963
BstKTI	GATC	7 cut(s)	64, 184, 286, 505, 595, 936, 985
BstMAI	GTCTC	4 cut(s)	46, 97, 422, 680
BstMBI	GATC	7 cut(s)	61, 181, 283, 502, 592, 933, 982
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	2 cut(s)	135, 415
BstSFI	CTRYAG	1 cut(s)	549
BstZ17I	GTATAC	1 cut(s)	850
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	385, 397, 491
BsuTUI	ATCGAT	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	510, 703
BtsI	GCAGTG	1 cut(s)	557
BtsIMutI	CAGTG	1 cut(s)	557
BveI	ACCTGC	1 cut(s)	662
Cac8I	GCNNGC	2 cut(s)	399, 959
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	1 cut(s)	963
Cfr13I	GGNCC	2 cut(s)	383, 490
ClaI	ATCGAT	1 cut(s)	60
CsiI	ACCWGGT	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	5 cut(s)	146, 166, 287, 433, 766
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	2 cut(s)	468, 953
DpnI	GATC	7 cut(s)	63, 183, 285, 504, 594, 935, 984
DpnII	GATC	7 cut(s)	61, 181, 283, 502, 592, 933, 982
EciI	GGCGGA	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	623
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	2 cut(s)	74, 625
Eco31I	GGTCTC	2 cut(s)	422, 680
Eco47III	AGCGCT	1 cut(s)	962
Eco53kI	GAGCTC	1 cut(s)	623
Eco88I	CYCGRG	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	2 cut(s)	74, 625
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	5 cut(s)	149, 169, 290, 436, 769
FatI	CATG	5 cut(s)	145, 165, 286, 432, 765
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	181
FblI	GTMKAC	2 cut(s)	849, 993
Fnu4HI	GCNGC	1 cut(s)	943
FokI	GGATG	2 cut(s)	497, 710
FriOI	GRGCYC	2 cut(s)	74, 625
Fsp4HI	GCNGC	1 cut(s)	943
GlaI	GCGC	1 cut(s)	962
GluI	GCNGC	1 cut(s)	943
GsuI	CTGGAG	3 cut(s)	387, 639, 799
HaeII	RGCGCY	1 cut(s)	964
HaeIII	GGCC	3 cut(s)	385, 397, 491
HapII	CCGG	1 cut(s)	416
HhaI	GCGC	1 cut(s)	963
Hin1II	CATG	5 cut(s)	149, 169, 290, 436, 769
Hin6I	GCGC	1 cut(s)	961
HinP1I	GCGC	1 cut(s)	961
HinfI	GANTC	2 cut(s)	39, 142
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	2 cut(s)	151, 773
Hpy166II	GTNNAC	5 cut(s)	301, 566, 801, 850, 994
Hpy188I	TCNGA	5 cut(s)	186, 592, 631, 907, 987
Hpy188III	TCNNGA	8 cut(s)	269, 281, 287, 404, 500, 506, 830, 869
Hpy8I	GTNNAC	5 cut(s)	301, 566, 801, 850, 994
Hpy99I	CGWCG	2 cut(s)	29, 275
HpyAV	CCTTC	2 cut(s)	166, 273
HpyCH4III	ACNGT	1 cut(s)	827
HpyCH4IV	ACGT	2 cut(s)	303, 896
HpyCH4V	TGCA	8 cut(s)	57, 218, 671, 687, 701, 743, 808, 900
HpyF3I	CTNAG	2 cut(s)	468, 953
HpySE526I	ACGT	2 cut(s)	303, 896
Hsp92II	CATG	5 cut(s)	149, 169, 290, 436, 769
HspAI	GCGC	1 cut(s)	961
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	7 cut(s)	61, 181, 283, 502, 592, 933, 982
LmnI	GCTCC	5 cut(s)	226, 406, 614, 620, 780
LweI	GCATC	3 cut(s)	66, 286, 688
MabI	ACCWGGT	1 cut(s)	135
MaeII	ACGT	2 cut(s)	303, 896
MaeIII	GTNAC	2 cut(s)	761, 866
MalI	GATC	7 cut(s)	63, 183, 285, 504, 594, 935, 984
MboI	GATC	7 cut(s)	61, 181, 283, 502, 592, 933, 982
MboII	GAAGA	2 cut(s)	362, 511
MhlI	GDGCHC	2 cut(s)	74, 625
MluCI	AATT	3 cut(s)	244, 606, 923
MlyI	GAGTC	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	2 cut(s)	137, 417
MvaI	CCWGG	1 cut(s)	137
NciI	CCSGG	1 cut(s)	417
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	7 cut(s)	61, 181, 283, 502, 592, 933, 982
NlaIII	CATG	5 cut(s)	149, 169, 290, 436, 769
NmuCI	GTSAC	2 cut(s)	761, 866
NspI	RCATGY	1 cut(s)	769
PaeR7I	CTCGAG	1 cut(s)	67
PagI	TCATGA	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	602
PkrI	GCNGC	1 cut(s)	944
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Ppu21I	YACGTR	2 cut(s)	304, 897
PsiI	TTATAA	1 cut(s)	644
Psp124BI	GAGCTC	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	383, 490
PspXI	VCTCGAGB	1 cut(s)	67
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	576
SacI	GAGCTC	1 cut(s)	625
SatI	GCNGC	1 cut(s)	943
Sau3AI	GATC	7 cut(s)	61, 181, 283, 502, 592, 933, 982
Sau96I	GGNCC	2 cut(s)	383, 490
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	2 cut(s)	137, 417
SduI	GDGCHC	2 cut(s)	74, 625
SexAI	ACCWGGT	1 cut(s)	135
SfaNI	GCATC	3 cut(s)	66, 286, 688
SfcI	CTRYAG	1 cut(s)	549
Sfr274I	CTCGAG	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	3 cut(s)	244, 606, 923
SsiI	CCGC	3 cut(s)	45, 123, 943
SspI	AATATT	1 cut(s)	757
SstI	GAGCTC	1 cut(s)	625
StyD4I	CCNGG	2 cut(s)	135, 415
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	827
TaiI	ACGT	2 cut(s)	306, 899
TaqI	TCGA	6 cut(s)	60, 68, 270, 282, 507, 522
TasI	AATT	3 cut(s)	244, 606, 923
TauI	GCSGC	1 cut(s)	945
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	2 cut(s)	761, 866
Tsp45I	GTSAC	2 cut(s)	761, 866
TspDTI	ATGAA	2 cut(s)	154, 303
TspGWI	ACGGA	2 cut(s)	42, 79
TspRI	CASTG	1 cut(s)	564
Van91I	CCANNNNNTGG	1 cut(s)	602
XapI	RAATTY	2 cut(s)	606, 923
XceI	RCATGY	1 cut(s)	769
XhoI	CTCGAG	1 cut(s)	67
XmiI	GTMKAC	2 cut(s)	849, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.