Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008333

Physical Location & Seq

Genomic Coordinates Reverse (-)

12354000 .. 12361514

Gene Structure 7515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17490.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGACCGTCAACTAAAGCAATAAATCAGAGGAGTCAGAAATCCGAAAGCTTTTCCTCCATTTCGTACACTCGATTCTCAATTCCTGCCACTTCACTTCCCCCGAAAATGGCAACCCAAATCACTAACGGCGACGGAGCCGCCAGTGTCTCCGCCCTCAACTGCATCGATCTCTCAAGCTCTGACACCCACCGATCCGTCTCTTTGCTCAAACAGGCGTGTTTGGATTGCGGGTTTTTCTACTTGCTGAATCATGGAATAAGCGAGGAGTTCATGGCGGAGGTGTTTGGTCAGAGTAGGAGGCTTTTCGAGTTGCCATTGGGTGCAAAAATGGAGCTTTTGAGGAACAAGAACTACAGGGGATATACCCCTTATCTCGACCAGCATCTCGATCCTGAAAACCAAGTTCACGGAGATTACAAGGAGGGGTATTACATAGGAGTTGAGCTGCAAGAAGATGACCCAGAAGCTAAAAAGCCGTTTTATGGCCCTAATGTTTGGCCTGCTCCAGATGTGTTGCCGGGGTGGAGGGAGACTATGGAGGAATATCATAGACAATGCTTGGAGGTGGCTAAGTCAGTTGCTAGGCTTGTGGCCCTTGCTCTTGATCTTGACATCCATTTCTTCGACAAACCAGAAATGCTAGACGAGGCTATAGCAACAGTGAGGTTACTACACTACGATGGTCAGGTTTCTGATCCAGTGAAAGGAATTTTTGGAGCTGGAGCTCATTCGGACTTTGGTTTTATAACCCTGTTGGCAACAGATGATGTTGTAGGTCTCCAAATATGCAAGGATAAGGATGTGAAACCTCAAATATGGGAATATGTATCACCAATAAAAGGAGCATTTATAGTGAATATTGGTGACATGCTGGAACGCTGGAGCAACGGCGTTTTCAAGTCCACATTGCATAGAGTTGTAGGGAACGGTCAAGACAGATATTCTATCGCATTCTTTATAGAACCAAGTCACGATTGTCTTGTCGAGTGCCTGCCTACCTGCAAATCCGAAAAAAACCCTCCCAAGTTTCCTCCGATCTTGTGCCGCACTTACCTGAACCAGCGCTATCACGATACTCACACTGATAAGAATGTCTACACCGAACACAACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

373

Amino Acids

42.01

Weight (kDa)

5.63

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35190 AT1G35190
fragaria_vesca	FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010
malus_domestica	MD02G1064900.v1.1
prunus_persica	Prupe.7G221000_v2.0.a1 Prupe.7G221000_v2.0.a1
pyrus_communis	pycom02g05100 pycom03g18760 pycom15g17490
rosa_chinensis	RchiOBHm_Chr2g0091751
rosa_laevigata	RLG00000016249
rosa_multiflora	Rmu_sc0000897.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149770
rosa_rugosa	Rorug02G0020300 Rorug02G0020400 Rorug02G0020500
rosa_samantha	Rh2CG065900 Rh2DG064400
rosa_wichuraiana	Rw2G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
Acc36I	ACCTGC	1 cut(s)	1010
AccI	GTMKAC	1 cut(s)	1098
AciI	CCGC	5 cut(s)	141, 153, 231, 278, 1048
AclWI	GGATC	3 cut(s)	189, 386, 692
AcsI	RAATTY	1 cut(s)	711
AfaI	GTAC	1 cut(s)	68
AfeI	AGCGCT	1 cut(s)	1067
AfiI	CCNNNNNNNGG	4 cut(s)	109, 485, 707, 842
AgsI	TTSAA	1 cut(s)	901
AluBI	AGCT	7 cut(s)	51, 180, 337, 448, 470, 722, 728
AluI	AGCT	7 cut(s)	51, 180, 337, 448, 470, 722, 728
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	4 cut(s)	154, 205, 527, 785
AlwI	GGATC	3 cut(s)	189, 386, 692
Aor51HI	AGCGCT	1 cut(s)	1067
AoxI	GGCC	3 cut(s)	487, 500, 594
ApeKI	GCWGC	1 cut(s)	448
ApoI	RAATTY	1 cut(s)	711
AspLEI	GCGC	1 cut(s)	1068
AspS9I	GGNCC	2 cut(s)	488, 595
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	2 cut(s)	825, 878
BanII	GRGCYC	1 cut(s)	730
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	677
BceAI	ACGGC	3 cut(s)	145, 463, 907
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	4 cut(s)	154, 205, 527, 785
BfaI	CTAG	2 cut(s)	585, 644
BfmI	CTRYAG	2 cut(s)	355, 654
BfoI	RGCGCY	1 cut(s)	1069
BfuAI	ACCTGC	1 cut(s)	1010
BisI	GCNGC	3 cut(s)	141, 449, 1048
BlsI	GCNGC	3 cut(s)	142, 450, 1049
Bme1390I	CCNGG	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	488, 595
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	522
BmsI	GCATC	2 cut(s)	174, 394
BpmI	CTGGAG	3 cut(s)	492, 744, 904
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	522
Bsa29I	ATCGAT	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 485, 707, 842
Bse1I	ACTGG	2 cut(s)	144, 701
Bse3DI	GCAATG	1 cut(s)	908
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	2 cut(s)	615, 808
BseLI	CCNNNNNNNGG	4 cut(s)	109, 485, 707, 842
BseMI	GCAATG	1 cut(s)	908
BseNI	ACTGG	2 cut(s)	144, 701
BseRI	GAGGAG	2 cut(s)	46, 281
BseXI	GCAGC	1 cut(s)	435
BshFI	GGCC	3 cut(s)	489, 502, 596
BshVI	ATCGAT	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	730
BsiSI	CCGG	1 cut(s)	521
BslI	CCNNNNNNNGG	4 cut(s)	109, 485, 707, 842
BsmAI	GTCTC	4 cut(s)	154, 205, 527, 785
BsmBI	CGTCTC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	953
BsnI	GGCC	3 cut(s)	489, 502, 596
Bso31I	GGTCTC	1 cut(s)	785
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	6 cut(s)	169, 194, 391, 607, 697, 1038
BspACI	CCGC	5 cut(s)	141, 153, 231, 278, 1048
BspANI	GGCC	3 cut(s)	489, 502, 596
BspDI	ATCGAT	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	1010
BspPI	GGATC	3 cut(s)	189, 386, 692
BspTNI	GGTCTC	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	908
BsrI	ACTGG	2 cut(s)	144, 701
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	6 cut(s)	169, 194, 391, 607, 697, 1038
Bst4CI	ACNGT	4 cut(s)	9, 664, 932, 1115
BstC8I	GCNNGC	2 cut(s)	504, 995
BstDEI	CTNAG	1 cut(s)	573
BstF5I	GGATG	2 cut(s)	615, 808
BstH2I	RGCGCY	1 cut(s)	1069
BstHHI	GCGC	1 cut(s)	1068
BstKTI	GATC	6 cut(s)	172, 197, 394, 610, 700, 1041
BstMAI	GTCTC	4 cut(s)	154, 205, 527, 785
BstMBI	GATC	6 cut(s)	169, 194, 391, 607, 697, 1038
BstNSI	RCATGY	1 cut(s)	874
BstSCI	CCNGG	1 cut(s)	520
BstSFI	CTRYAG	2 cut(s)	355, 654
BstV1I	GCAGC	1 cut(s)	435
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	489, 502, 596
BsuTUI	ATCGAT	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	615, 808
BtsIMutI	CAGTG	4 cut(s)	151, 669, 708, 1083
BveI	ACCTGC	1 cut(s)	1010
Cac8I	GCNNGC	2 cut(s)	504, 995
CfoI	GCGC	1 cut(s)	1068
Cfr13I	GGNCC	2 cut(s)	488, 595
ClaI	ATCGAT	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	3 cut(s)	254, 274, 871
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	573
DpnI	GATC	6 cut(s)	171, 196, 393, 609, 699, 1040
DpnII	GATC	6 cut(s)	169, 194, 391, 607, 697, 1038
EciI	GGCGGA	2 cut(s)	142, 293
Ecl136II	GAGCTC	1 cut(s)	728
Eco24I	GRGCYC	1 cut(s)	730
Eco31I	GGTCTC	1 cut(s)	785
Eco47III	AGCGCT	1 cut(s)	1067
Eco53kI	GAGCTC	1 cut(s)	728
EcoICRI	GAGCTC	1 cut(s)	728
EcoT38I	GRGCYC	1 cut(s)	730
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	3 cut(s)	257, 277, 874
FatI	CATG	3 cut(s)	253, 273, 870
FauI	CCCGC	1 cut(s)	224
FblI	GTMKAC	1 cut(s)	1098
Fnu4HI	GCNGC	3 cut(s)	141, 449, 1048
FokI	GGATG	2 cut(s)	602, 815
FriOI	GRGCYC	1 cut(s)	730
Fsp4HI	GCNGC	3 cut(s)	141, 449, 1048
FspBI	CTAG	2 cut(s)	585, 644
GlaI	GCGC	1 cut(s)	1067
GluI	GCNGC	3 cut(s)	141, 449, 1048
GsuI	CTGGAG	3 cut(s)	492, 744, 904
HaeII	RGCGCY	1 cut(s)	1069
HaeIII	GGCC	3 cut(s)	489, 502, 596
HapII	CCGG	1 cut(s)	521
HhaI	GCGC	1 cut(s)	1068
Hin1II	CATG	3 cut(s)	257, 277, 874
Hin6I	GCGC	1 cut(s)	1066
HinP1I	GCGC	1 cut(s)	1066
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	3 cut(s)	34, 75, 250
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	2 cut(s)	825, 878
Hpy166II	GTNNAC	5 cut(s)	12, 69, 409, 906, 1099
Hpy188I	TCNGA	9 cut(s)	30, 39, 46, 184, 294, 697, 736, 1012, 1038
Hpy188III	TCNNGA	9 cut(s)	377, 389, 395, 509, 605, 611, 935, 974, 1073
Hpy8I	GTNNAC	5 cut(s)	12, 69, 409, 906, 1099
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4III	ACNGT	4 cut(s)	9, 664, 932, 1115
HpyCH4V	TGCA	6 cut(s)	165, 326, 451, 792, 913, 1005
HpyF3I	CTNAG	1 cut(s)	573
Hsp92II	CATG	3 cut(s)	257, 277, 874
HspAI	GCGC	1 cut(s)	1066
Kzo9I	GATC	6 cut(s)	169, 194, 391, 607, 697, 1038
LmnI	GCTCC	7 cut(s)	137, 334, 511, 719, 725, 845, 885
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	2 cut(s)	174, 394
MaeI	CTAG	2 cut(s)	585, 644
MaeIII	GTNAC	3 cut(s)	669, 866, 971
MalI	GATC	6 cut(s)	171, 196, 393, 609, 699, 1040
MboI	GATC	6 cut(s)	169, 194, 391, 607, 697, 1038
MboII	GAAGA	2 cut(s)	467, 616
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	2 cut(s)	81, 711
MlyI	GAGTC	1 cut(s)	43
MseI	TTAA	1 cut(s)	1117
MslI	CAYNNNNRTG	1 cut(s)	681
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	953
NciI	CCSGG	1 cut(s)	522
NdeII	GATC	6 cut(s)	169, 194, 391, 607, 697, 1038
NlaIII	CATG	3 cut(s)	257, 277, 874
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	866, 971
NspI	RCATGY	1 cut(s)	874
PctI	GAATGC	1 cut(s)	953
PfeI	GAWTC	2 cut(s)	75, 250
PkrI	GCNGC	3 cut(s)	142, 450, 1049
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PsiI	TTATAA	1 cut(s)	749
Psp124BI	GAGCTC	1 cut(s)	730
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	488, 595
PsrI	GAACNNNNNNTAC	2 cut(s)	338, 370
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	681
SacI	GAGCTC	1 cut(s)	730
SaqAI	TTAA	1 cut(s)	1117
SatI	GCNGC	3 cut(s)	141, 449, 1048
Sau3AI	GATC	6 cut(s)	169, 194, 391, 607, 697, 1038
Sau96I	GGNCC	2 cut(s)	488, 595
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	1 cut(s)	730
SfaNI	GCATC	2 cut(s)	174, 394
SfcI	CTRYAG	2 cut(s)	355, 654
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	2 cut(s)	81, 711
SsiI	CCGC	5 cut(s)	141, 153, 231, 278, 1048
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	2 cut(s)	585, 644
SstI	GAGCTC	1 cut(s)	730
StyD4I	CCNGG	1 cut(s)	520
TaaI	ACNGT	4 cut(s)	9, 664, 932, 1115
TaqI	TCGA	7 cut(s)	73, 168, 309, 378, 390, 627, 987
TasI	AATT	2 cut(s)	81, 711
TauI	GCSGC	2 cut(s)	143, 1050
TfiI	GAWTC	2 cut(s)	75, 250
Tru1I	TTAA	1 cut(s)	1117
Tru9I	TTAA	1 cut(s)	1117
TscAI	CASTG	4 cut(s)	151, 669, 708, 1090
TseFI	GTSAC	2 cut(s)	866, 971
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	2 cut(s)	866, 971
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	3 cut(s)	150, 187, 426
TspRI	CASTG	4 cut(s)	151, 669, 708, 1090
XapI	RAATTY	1 cut(s)	711
XceI	RCATGY	1 cut(s)	874
XmiI	GTMKAC	1 cut(s)	1098
XspI	CTAG	2 cut(s)	585, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.