Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008333

Physical Location & Seq

Genomic Coordinates Forward (+)

1653440 .. 1653820

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0020500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCAATGAAAATTGTAGCATTGTCTTCCCTGCTGCCAGTGACATTACTCATCACCACCTTGCTAACCCAACCAGGAATAGCCAATGCGCAGTTGCCACAGACTCCTCCTTCGATTCCAGGCCTGTTTCCACCAGGAACTCCGCAAGATGCACTTAAATGTTGGTCATCTCTAACCGGCATTAGTGGATGTGTTATGGAAATCTTTCAATCTGTTTTCAGCTTGCAATTAGGCACCATTGGTGCCGACTGTTGCAAGGCCTTCCTTTCTATCGAGGAAAGCTGTTTGCCCAAAATGTTTCCTCTGACTCCTTTCTTCCCTCCTTTGCTCAAGAACTTTTGTGCTCTCCAAGGAGGTCCTGCTCCCCCAGCAAGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

126

Amino Acids

13.29

Weight (kDa)

7.55

Isoelectric Point (pI)

61.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	53 - 114	3.2e-16	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35190 AT1G35190
fragaria_vesca	FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010
malus_domestica	MD02G1064900.v1.1
prunus_persica	Prupe.7G221000_v2.0.a1 Prupe.7G221000_v2.0.a1
pyrus_communis	pycom02g05100 pycom03g18760 pycom15g17490
rosa_chinensis	RchiOBHm_Chr2g0091751
rosa_laevigata	RLG00000016249
rosa_multiflora	Rmu_sc0000897.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149770
rosa_rugosa	Rorug02G0020300 Rorug02G0020400 Rorug02G0020500
rosa_samantha	Rh2CG065900 Rh2DG064400
rosa_wichuraiana	Rw2G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	90
AccB1I	GGYRCC	2 cut(s)	233, 242
AciI	CCGC	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	3 cut(s)	73, 118, 133
AluBI	AGCT	2 cut(s)	222, 282
AluI	AGCT	2 cut(s)	222, 282
Alw21I	GWGCWC	1 cut(s)	346
AoxI	GGCC	2 cut(s)	121, 258
ApeKI	GCWGC	1 cut(s)	34
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
Asp700I	GAANNNNTTC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	356
BanI	GGYRCC	2 cut(s)	233, 242
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	21
BciT130I	CCWGG	3 cut(s)	75, 120, 135
BfaI	CTAG	1 cut(s)	379
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	3 cut(s)	75, 120, 135
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	2 cut(s)	235, 244
BmrFI	CCNGG	3 cut(s)	75, 120, 135
BmsI	GCATC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	75, 120, 135
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	367
BshFI	GGCC	2 cut(s)	123, 260
BshNI	GGYRCC	2 cut(s)	233, 242
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	177
BsnI	GGCC	2 cut(s)	123, 260
Bsp1286I	GDGCHC	1 cut(s)	346
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	2 cut(s)	123, 260
BspLI	GGNNCC	2 cut(s)	235, 244
BspT107I	GGYRCC	2 cut(s)	233, 242
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	3 cut(s)	75, 120, 135
Bst4CI	ACNGT	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	3 cut(s)	75, 120, 135
BstSCI	CCNGG	3 cut(s)	73, 118, 133
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	123, 260
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	224
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	356
CviJI	RGCY	5 cut(s)	83, 123, 222, 260, 282
CviKI_1	RGCY	5 cut(s)	83, 123, 222, 260, 282
Eco130I	CCWWGG	1 cut(s)	349
Eco147I	AGGCCT	2 cut(s)	123, 260
Eco47I	GGWCC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRII	CCWGG	3 cut(s)	73, 118, 133
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaiI	YATR	1 cut(s)	197
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	379
FspI	TGCGCA	1 cut(s)	90
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	123, 260
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	4 cut(s)	103, 115, 307, 375
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	120, 271
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	3 cut(s)	152, 226, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HspAI	GCGC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	18, 307
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	2 cut(s)	12, 227
MlyI	GAGTC	2 cut(s)	97, 301
MnlI	CCTC	5 cut(s)	117, 268, 312, 330, 347
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	157
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	75, 120, 135
MvaI	CCWGG	3 cut(s)	75, 120, 135
MwoI	GCNNNNNNNGC	1 cut(s)	368
NlaIV	GGNNCC	2 cut(s)	235, 244
NmuCI	GTSAC	1 cut(s)	40
NsbI	TGCGCA	1 cut(s)	90
PceI	AGGCCT	2 cut(s)	123, 260
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	115, 375
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	2 cut(s)	97, 301
PpsI	GAGTC	2 cut(s)	97, 301
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	3 cut(s)	73, 118, 133
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	3 cut(s)	73, 118, 133
PspN4I	GGNNCC	2 cut(s)	235, 244
PspPI	GGNCC	1 cut(s)	356
PspPPI	RGGWCCY	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	35
Sau96I	GGNCC	1 cut(s)	356
SchI	GAGTC	2 cut(s)	97, 301
ScrFI	CCNGG	3 cut(s)	75, 120, 135
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	4 cut(s)	62, 224, 284, 358
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	2 cut(s)	12, 227
SseBI	AGGCCT	2 cut(s)	123, 260
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	379
StuI	AGGCCT	2 cut(s)	123, 260
StyD4I	CCNGG	3 cut(s)	73, 118, 133
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	2 cut(s)	113, 273
TasI	AATT	2 cut(s)	12, 227
TfiI	GAWTC	2 cut(s)	115, 375
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.