Rw2G005540

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
5217573 .. 5220058
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005540.1

Sequence Viewer

Length: 936 bp
ATGGATAACGGAATCAAGAACGGTGCTGAAGCCATAACAGTCTCGGCTCTCAATTGTATTGATCTCTCAACCACAGATACTCACCAATCCGTCTCTCTACTCAAACAGGCCTGTTTGGATTGCGGTTTCTTCTACGTGGTAAATCATGGAATAACCGAGCAATTCATGGACGAGGTGTTTTCACAGAGCAGGAGGATGTTCAGTTTACCGTTGAGTGAAAAAATGAAGCTTTTGAGGAACAAGAAGCACAGGGGATATACCCCTCTTCTTGATGAGCATCTGGACCATGAAAACCAAGTTCATGGAGATTACAAGGAGGGGTATTACATAGGAGATGAGGTAGCTGAAGACGACCCAAAAGCGGAAAAGCCATTTTATGGTCCTAATGTTTGGCCTGCACCAGATATCTTGCCTGGGTGGAGGGAGACTATGGAAGAATTTCATAGACAAGCCTTAGAGGTGGCTAAAGTAGTTGCTAGGCTCATAGCCCTTGCTCTTGACCTTGATGTTCATTTCTTTGATAAGCAAGAAATGCTTGGTGAGGCTATTGCGACGTTGCGCTTACTACACTATGAAGGAAAAATATCTGATCCATCAAATGGAATTTTCGGAGCCGGAGCGCATTCTGACTTCGGTCTCATTACCCTTTGGCAACTGATGATAGCATTTATAGTGAATCTTGGTGACATGCTGGAACGCTGGAGTAACTGTATTTTCAAGTCCACATTGCATAGAGTTGTAGGGAACGGTCGAGAGAGATACTCTATTGCATACTTTATAGAACCTAGTCATGATTGTCTTGTCGAGTGCTTACCTTCCTGCAAGTCAGAAAATAACCCTCCCAAGTTTCCTCCAATCTTGTGTCAAACTTACCTGAGCCAGCGCTATAGTGATACTCATGCTGATCTGACTACCTACGGAGAAAATAAAAACTAA

Protein Analysis

311

Amino Acids

35.31

Weight (kDa)

5.28

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 18 - 133 3e-34 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 222 - 262 2.2e-09 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 377, 599
AciI CCGC 2 cut(s) 123, 362
AclWI GGATC 1 cut(s) 584
AcsI RAATTY 2 cut(s) 437, 603
AcuI CTGAAG 2 cut(s) 48, 366
AfeI AGCGCT 1 cut(s) 884
AfiI CCNNNNNNNGG 3 cut(s) 361, 377, 599
AgsI TTSAA 1 cut(s) 718
AjnI CCWGG 1 cut(s) 412
AluBI AGCT 2 cut(s) 229, 344
AluI AGCT 2 cut(s) 229, 344
Alw26I GTCTC 4 cut(s) 46, 97, 419, 641
AlwI GGATC 1 cut(s) 584
Aor51HI AGCGCT 1 cut(s) 884
AoxI GGCC 2 cut(s) 108, 392
ApoI RAATTY 2 cut(s) 437, 603
Asp700I GAANNNNTTC 1 cut(s) 438
AspLEI GCGC 3 cut(s) 561, 622, 885
AspS9I GGNCC 2 cut(s) 283, 380
AsuHPI GGTGA 3 cut(s) 74, 551, 695
AvaII GGWCC 2 cut(s) 283, 380
BbsI GAAGAC 1 cut(s) 354
BccI CCATC 1 cut(s) 601
BciT130I CCWGG 1 cut(s) 414
BcoDI GTCTC 4 cut(s) 46, 97, 419, 641
BfaI CTAG 2 cut(s) 477, 786
BfmI CTRYAG 1 cut(s) 886
BfoI RGCGCY 1 cut(s) 886
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 2 cut(s) 283, 380
BmgT120I GGNCC 2 cut(s) 283, 380
BmiI GGNNCC 1 cut(s) 613
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 633
BpiI GAAGAC 1 cut(s) 354
BplI GAGNNNNNCTC 2 cut(s) 746, 778
BpmI CTGGAG 1 cut(s) 721
Bpu10I CCTNAGC 1 cut(s) 875
BsaAI YACGTR 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 641
BsaJI CCNNGG 1 cut(s) 413
BsaXI ACNNNNNCTCC 4 cut(s) 324, 354, 694, 724
Bsc4I CCNNNNNNNGG 3 cut(s) 361, 377, 599
Bse3DI GCAATG 1 cut(s) 725
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 1 cut(s) 201
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 3 cut(s) 361, 377, 599
BseMI GCAATG 1 cut(s) 725
BseMII CTCAG 1 cut(s) 866
BsgI GTGCAG 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 751
BshFI GGCC 2 cut(s) 110, 394
BsiEI CGRYCG 1 cut(s) 751
BsiSI CCGG 1 cut(s) 615
BslI CCNNNNNNNGG 3 cut(s) 361, 377, 599
BsmAI GTCTC 4 cut(s) 46, 97, 419, 641
BsmBI CGTCTC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 2 cut(s) 110, 394
Bso31I GGTCTC 1 cut(s) 641
Bsp143I GATC 3 cut(s) 61, 589, 904
BspACI CCGC 2 cut(s) 123, 362
BspANI GGCC 2 cut(s) 110, 394
BspCNI CTCAG 1 cut(s) 867
BspHI TCATGA 1 cut(s) 790
BspLI GGNNCC 1 cut(s) 613
BspPI GGATC 1 cut(s) 584
BspTNI GGTCTC 1 cut(s) 641
BsrDI GCAATG 1 cut(s) 725
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 3 cut(s) 61, 589, 904
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 5 cut(s) 23, 40, 210, 710, 749
Bst6I CTCTTC 1 cut(s) 270
BstAPI GCANNNNNTGC 1 cut(s) 532
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 396, 881
BstDEI CTNAG 2 cut(s) 454, 875
BstF5I GGATG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 886
BstHHI GCGC 3 cut(s) 561, 622, 885
BstKTI GATC 3 cut(s) 64, 592, 907
BstMAI GTCTC 4 cut(s) 46, 97, 419, 641
BstMBI GATC 3 cut(s) 61, 589, 904
BstMCI CGRYCG 1 cut(s) 751
BstMWI GCNNNNNNNGC 1 cut(s) 532
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 691
BstPAI GACNNNNGTC 1 cut(s) 633
BstSCI CCNGG 1 cut(s) 412
BstSFI CTRYAG 1 cut(s) 886
BstV2I GAAGAC 1 cut(s) 354
BstXI CCANNNNNNTGG 1 cut(s) 302
BsuRI GGCC 2 cut(s) 110, 394
BtsCI GGATG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 396, 881
CciI TCATGA 1 cut(s) 790
CfoI GCGC 3 cut(s) 561, 622, 885
Cfr13I GGNCC 2 cut(s) 283, 380
CviAII CATG 7 cut(s) 146, 166, 287, 302, 688, 791, 899
DdeI CTNAG 2 cut(s) 454, 875
DpnI GATC 3 cut(s) 63, 591, 906
DpnII GATC 3 cut(s) 61, 589, 904
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 641
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 283, 380
Eco47III AGCGCT 1 cut(s) 884
Eco57I CTGAAG 2 cut(s) 48, 366
EcoRII CCWGG 1 cut(s) 412
EcoRV GATATC 1 cut(s) 406
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 7 cut(s) 149, 169, 290, 305, 691, 794, 902
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FatI CATG 7 cut(s) 145, 165, 286, 301, 687, 790, 898
FokI GGATG 1 cut(s) 208
FspBI CTAG 2 cut(s) 477, 786
GlaI GCGC 3 cut(s) 560, 621, 884
GsuI CTGGAG 1 cut(s) 721
HaeII RGCGCY 1 cut(s) 886
HaeIII GGCC 2 cut(s) 110, 394
HapII CCGG 1 cut(s) 615
HhaI GCGC 3 cut(s) 561, 622, 885
Hin1II CATG 7 cut(s) 149, 169, 290, 305, 691, 794, 902
Hin6I GCGC 3 cut(s) 559, 620, 883
HinP1I GCGC 3 cut(s) 559, 620, 883
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 2 cut(s) 12, 676
HpaII CCGG 1 cut(s) 615
HphI GGTGA 3 cut(s) 74, 551, 695
Hpy166II GTNNAC 2 cut(s) 206, 723
Hpy188I TCNGA 5 cut(s) 589, 611, 628, 829, 909
Hpy188III TCNNGA 6 cut(s) 16, 269, 281, 497, 752, 791
Hpy8I GTNNAC 2 cut(s) 206, 723
Hpy99I CGWCG 1 cut(s) 556
HpyAV CCTTC 2 cut(s) 569, 825
HpyCH4III ACNGT 5 cut(s) 23, 40, 210, 710, 749
HpyCH4IV ACGT 2 cut(s) 135, 554
HpyCH4V TGCA 4 cut(s) 398, 730, 770, 822
HpyF10VI GCNNNNNNNGC 1 cut(s) 532
HpyF3I CTNAG 2 cut(s) 454, 875
HpySE526I ACGT 2 cut(s) 135, 554
Hsp92II CATG 7 cut(s) 149, 169, 290, 305, 691, 794, 902
HspAI GCGC 3 cut(s) 559, 620, 883
Kzo9I GATC 3 cut(s) 61, 589, 904
LmnI GCTCC 2 cut(s) 611, 617
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 477, 786
MaeII ACGT 2 cut(s) 135, 554
MaeIII GTNAC 2 cut(s) 683, 704
MalI GATC 3 cut(s) 63, 591, 906
MboI GATC 3 cut(s) 61, 589, 904
MboII GAAGA 4 cut(s) 121, 257, 359, 446
MfeI CAATTG 1 cut(s) 52
MluCI AATT 4 cut(s) 52, 161, 437, 603
MroXI GAANNNNTTC 1 cut(s) 438
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 1 cut(s) 414
MunI CAATTG 1 cut(s) 52
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 532
NdeII GATC 3 cut(s) 61, 589, 904
NlaIII CATG 7 cut(s) 149, 169, 290, 305, 691, 794, 902
NlaIV GGNNCC 1 cut(s) 613
NmeAIII GCCGAG 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 683
NspI RCATGY 1 cut(s) 691
PagI TCATGA 1 cut(s) 790
PceI AGGCCT 1 cut(s) 110
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 2 cut(s) 12, 676
PflMI CCANNNNNTGG 2 cut(s) 377, 599
Ppu21I YACGTR 1 cut(s) 136
PshAI GACNNNNGTC 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 613
PspPI GGNCC 2 cut(s) 283, 380
Sau3AI GATC 3 cut(s) 61, 589, 904
Sau96I GGNCC 2 cut(s) 283, 380
ScrFI CCNGG 1 cut(s) 414
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 886
SinI GGWCC 2 cut(s) 283, 380
Sse9I AATT 4 cut(s) 52, 161, 437, 603
SseBI AGGCCT 1 cut(s) 110
SsiI CCGC 2 cut(s) 123, 362
SspMI CTAG 2 cut(s) 477, 786
StuI AGGCCT 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 412
TaaI ACNGT 5 cut(s) 23, 40, 210, 710, 749
TaiI ACGT 2 cut(s) 138, 557
TaqI TCGA 2 cut(s) 751, 804
TaqII GACCGA 1 cut(s) 623
TasI AATT 4 cut(s) 52, 161, 437, 603
TfiI GAWTC 2 cut(s) 12, 676
TseFI GTSAC 1 cut(s) 683
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 7 cut(s) 154, 239, 290, 303, 431, 500, 588
TspGWI ACGGA 3 cut(s) 24, 79, 933
Van91I CCANNNNNTGG 2 cut(s) 377, 599
VpaK11BI GGWCC 2 cut(s) 283, 380
XapI RAATTY 2 cut(s) 437, 603
XceI RCATGY 1 cut(s) 691
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 2 cut(s) 477, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.