Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008333

Physical Location & Seq

Genomic Coordinates Reverse (-)

5082335 .. 5084829

Gene Structure 2495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGATAACGGAATCAAGAACGGTGCTGAAGCCATAGCAGTCTCGGCTCTCAATTGTATTGATCTCTCAAGCACAGATACTCACCAATCCGTTTCTCTACTCAAACAGGCCTGTTTGGATTGCGGTTTCTTCTACGTGGTAAATCATGGAATAACCGAGCAATTCATGGACGAGGTGTTTTCACAGAGCAGGAGGATGTTCAGTTTACCGTTGAGTGAAAAAATGATGCTTTTGAGGAACAAGAAGCACAGGGGATATACCCCTCTTCTTGATGAGCATCTGGACCATGAAAACCAAGTTCATGGAGATTACAAGGAGGGGTATTACATAGGAGTTGAGGTAGCTGAAGACGACCCAAAAGCGGAAAAGCCATTTTATGGTCCTAATGTTTGGCCTGCACCAGATATCTTGCCTGGGTGGAGGGAGACCATGGAAGAATTTCATAGACAAGCCTTAGAGGTGGCTAAGGCAGTTGCTAGGCTCATAGCCCTTGCTCTTGATCTAGATGTTCATTTCTTTGATAAGCAAGAAATGCTTGGTGAGGCTATTGCAACGTTGCGCTTACTACACTATGAAGGAAAAATATCTGATCCATCAAATGGAATTTTCGGAGCTGGAGCGCATTCTGACTTTGGTCTCATTACCCTTTTGGCAACTGATGATGTCTTAGGTCTCCAAATATGCAAGGATAAGGATGCCAAACCTCAGTTGTGGGAATATGTAGCACCGGTTAAAGGAGCATTTATAGTGAATCTTGGTGACATGCTGGAACGCTGGAGTAACTGTATTTTCAAGTCCACTTTGCATAGAGTTGTAGGGAACGGTCGAGAGAGATACTCTATTGCATACTTTATAGAACCTAGTCATGATTGTCTTGTCGAGTGCTTGCCTTCCTGCAAGTCAGAAAATAACCCTCCCAAGTTTCCTCCAATCTTGTGTCAAACTTACCTGAGCCAGCGCTATAGTGATACTCATGCTGATCTGACTACCTACGGAGAAAATAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

337

Amino Acids

37.86

Weight (kDa)

5.3

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	18 - 133	1.2e-33	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	189 - 287	6.8e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35190 AT1G35190
fragaria_vesca	FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010
malus_domestica	MD02G1064900.v1.1
prunus_persica	Prupe.7G221000_v2.0.a1 Prupe.7G221000_v2.0.a1
pyrus_communis	pycom02g05100 pycom03g18760 pycom15g17490
rosa_chinensis	RchiOBHm_Chr2g0091751
rosa_laevigata	RLG00000016249
rosa_multiflora	Rmu_sc0000897.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149770
rosa_rugosa	Rorug02G0020300 Rorug02G0020400 Rorug02G0020500
rosa_samantha	Rh2CG065900 Rh2DG064400
rosa_wichuraiana	Rw2G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	377, 599
AciI	CCGC	2 cut(s)	123, 362
AclI	AACGTT	1 cut(s)	554
AclWI	GGATC	1 cut(s)	584
AcsI	RAATTY	2 cut(s)	437, 603
AcuI	CTGAAG	2 cut(s)	48, 366
AfeI	AGCGCT	1 cut(s)	959
AfiI	CCNNNNNNNGG	4 cut(s)	361, 377, 599, 734
AgeI	ACCGGT	1 cut(s)	727
AgsI	TTSAA	1 cut(s)	793
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	2 cut(s)	344, 614
AluI	AGCT	2 cut(s)	344, 614
Alw26I	GTCTC	4 cut(s)	46, 419, 641, 677
AlwI	GGATC	1 cut(s)	584
Aor51HI	AGCGCT	1 cut(s)	959
AoxI	GGCC	2 cut(s)	108, 392
ApoI	RAATTY	2 cut(s)	437, 603
AsiGI	ACCGGT	1 cut(s)	727
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	3 cut(s)	561, 622, 960
AspS9I	GGNCC	2 cut(s)	283, 380
AsuHPI	GGTGA	3 cut(s)	74, 551, 770
AvaII	GGWCC	2 cut(s)	283, 380
BbsI	GAAGAC	1 cut(s)	354
BccI	CCATC	1 cut(s)	601
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	4 cut(s)	46, 419, 641, 677
BfaI	CTAG	3 cut(s)	477, 503, 861
BfmI	CTRYAG	1 cut(s)	961
BfoI	RGCGCY	1 cut(s)	961
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	2 cut(s)	283, 380
BmgT120I	GGNCC	2 cut(s)	283, 380
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	3 cut(s)	216, 286, 685
BoxI	GACNNNNGTC	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
BpmI	CTGGAG	2 cut(s)	636, 796
Bpu10I	CCTNAGC	2 cut(s)	465, 950
BpuEI	CTTGAG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	3 cut(s)	419, 641, 677
BsaJI	CCNNGG	2 cut(s)	413, 429
BsaWI	WCCGGW	1 cut(s)	727
BsaXI	ACNNNNNCTCC	4 cut(s)	324, 354, 769, 799
Bsc4I	CCNNNNNNNGG	4 cut(s)	361, 377, 599, 734
Bse118I	RCCGGY	1 cut(s)	727
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	413, 429
BseGI	GGATG	2 cut(s)	201, 700
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	4 cut(s)	361, 377, 599, 734
BseMII	CTCAG	2 cut(s)	719, 941
BsgI	GTGCAG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	826
BshFI	GGCC	2 cut(s)	110, 394
BshTI	ACCGGT	1 cut(s)	727
BsiEI	CGRYCG	1 cut(s)	826
BsiSI	CCGG	1 cut(s)	728
BslI	CCNNNNNNNGG	4 cut(s)	361, 377, 599, 734
BsmAI	GTCTC	4 cut(s)	46, 419, 641, 677
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	110, 394
Bso31I	GGTCTC	3 cut(s)	419, 641, 677
Bsp143I	GATC	4 cut(s)	61, 499, 589, 979
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	2 cut(s)	123, 362
BspANI	GGCC	2 cut(s)	110, 394
BspCNI	CTCAG	2 cut(s)	718, 942
BspHI	TCATGA	1 cut(s)	865
BspPI	GGATC	1 cut(s)	584
BspTNI	GGTCTC	3 cut(s)	419, 641, 677
BsrFI	RCCGGY	1 cut(s)	727
BssAI	RCCGGY	1 cut(s)	727
BssECI	CCNNGG	2 cut(s)	413, 429
BssMI	GATC	4 cut(s)	61, 499, 589, 979
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	4 cut(s)	23, 210, 785, 824
Bst6I	CTCTTC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	396, 887, 956
BstDEI	CTNAG	5 cut(s)	454, 465, 667, 705, 950
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	201, 700
BstH2I	RGCGCY	1 cut(s)	961
BstHHI	GCGC	3 cut(s)	561, 622, 960
BstKTI	GATC	4 cut(s)	64, 502, 592, 982
BstMAI	GTCTC	4 cut(s)	46, 419, 641, 677
BstMBI	GATC	4 cut(s)	61, 499, 589, 979
BstMCI	CGRYCG	1 cut(s)	826
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 532
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	766
BstPAI	GACNNNNGTC	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	961
BstV2I	GAAGAC	1 cut(s)	354
BstXI	CCANNNNNNTGG	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	110, 394
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	201, 700
Cac8I	GCNNGC	3 cut(s)	396, 887, 956
CciI	TCATGA	1 cut(s)	865
CfoI	GCGC	3 cut(s)	561, 622, 960
Cfr10I	RCCGGY	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	283, 380
CspAI	ACCGGT	1 cut(s)	727
CviAII	CATG	8 cut(s)	146, 166, 287, 302, 430, 763, 866, 974
DdeI	CTNAG	5 cut(s)	454, 465, 667, 705, 950
DpnI	GATC	4 cut(s)	63, 501, 591, 981
DpnII	GATC	4 cut(s)	61, 499, 589, 979
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	429
Eco147I	AGGCCT	1 cut(s)	110
Eco31I	GGTCTC	3 cut(s)	419, 641, 677
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	283, 380
Eco47III	AGCGCT	1 cut(s)	959
Eco57I	CTGAAG	2 cut(s)	48, 366
EcoRII	CCWGG	1 cut(s)	412
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	8 cut(s)	149, 169, 290, 305, 433, 766, 869, 977
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FatI	CATG	8 cut(s)	145, 165, 286, 301, 429, 762, 865, 973
FokI	GGATG	2 cut(s)	208, 707
FspBI	CTAG	3 cut(s)	477, 503, 861
GlaI	GCGC	3 cut(s)	560, 621, 959
GsuI	CTGGAG	2 cut(s)	636, 796
HaeII	RGCGCY	1 cut(s)	961
HaeIII	GGCC	2 cut(s)	110, 394
HapII	CCGG	1 cut(s)	728
HhaI	GCGC	3 cut(s)	561, 622, 960
Hin1II	CATG	8 cut(s)	149, 169, 290, 305, 433, 766, 869, 977
Hin6I	GCGC	3 cut(s)	559, 620, 958
HinP1I	GCGC	3 cut(s)	559, 620, 958
HinfI	GANTC	2 cut(s)	12, 751
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	3 cut(s)	74, 551, 770
Hpy166II	GTNNAC	2 cut(s)	206, 798
Hpy188I	TCNGA	5 cut(s)	589, 611, 628, 904, 984
Hpy188III	TCNNGA	7 cut(s)	16, 269, 281, 497, 503, 827, 866
Hpy8I	GTNNAC	2 cut(s)	206, 798
HpyAV	CCTTC	2 cut(s)	569, 900
HpyCH4III	ACNGT	4 cut(s)	23, 210, 785, 824
HpyCH4IV	ACGT	2 cut(s)	135, 554
HpyCH4V	TGCA	6 cut(s)	398, 551, 684, 805, 845, 897
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 532
HpyF3I	CTNAG	5 cut(s)	454, 465, 667, 705, 950
HpySE526I	ACGT	2 cut(s)	135, 554
Hsp92II	CATG	8 cut(s)	149, 169, 290, 305, 433, 766, 869, 977
HspAI	GCGC	3 cut(s)	559, 620, 958
Kzo9I	GATC	4 cut(s)	61, 499, 589, 979
LmnI	GCTCC	3 cut(s)	611, 617, 737
LweI	GCATC	3 cut(s)	216, 286, 685
MaeI	CTAG	3 cut(s)	477, 503, 861
MaeII	ACGT	2 cut(s)	135, 554
MaeIII	GTNAC	2 cut(s)	758, 779
MalI	GATC	4 cut(s)	63, 501, 591, 981
MboI	GATC	4 cut(s)	61, 499, 589, 979
MboII	GAAGA	4 cut(s)	121, 257, 359, 446
MfeI	CAATTG	1 cut(s)	52
MluCI	AATT	4 cut(s)	52, 161, 437, 603
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	1 cut(s)	732
MspI	CCGG	1 cut(s)	728
MspR9I	CCNGG	1 cut(s)	414
MunI	CAATTG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	44, 532
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	4 cut(s)	61, 499, 589, 979
NlaIII	CATG	8 cut(s)	149, 169, 290, 305, 433, 766, 869, 977
NmeAIII	GCCGAG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	758
NspI	RCATGY	1 cut(s)	766
PagI	TCATGA	1 cut(s)	865
PceI	AGGCCT	1 cut(s)	110
PctI	GAATGC	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	12, 751
PflMI	CCANNNNNTGG	2 cut(s)	377, 599
PinAI	ACCGGT	1 cut(s)	727
Ppu21I	YACGTR	1 cut(s)	136
PshAI	GACNNNNGTC	1 cut(s)	633
Psp1406I	AACGTT	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspPI	GGNCC	2 cut(s)	283, 380
SaqAI	TTAA	1 cut(s)	732
Sau3AI	GATC	4 cut(s)	61, 499, 589, 979
Sau96I	GGNCC	2 cut(s)	283, 380
ScrFI	CCNGG	1 cut(s)	414
SfaNI	GCATC	3 cut(s)	216, 286, 685
SfcI	CTRYAG	1 cut(s)	961
SinI	GGWCC	2 cut(s)	283, 380
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	4 cut(s)	52, 161, 437, 603
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	2 cut(s)	123, 362
SspMI	CTAG	3 cut(s)	477, 503, 861
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	4 cut(s)	23, 210, 785, 824
TaiI	ACGT	2 cut(s)	138, 557
TaqI	TCGA	2 cut(s)	826, 879
TasI	AATT	4 cut(s)	52, 161, 437, 603
TfiI	GAWTC	2 cut(s)	12, 751
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TseFI	GTSAC	1 cut(s)	758
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	6 cut(s)	154, 290, 303, 431, 500, 588
TspGWI	ACGGA	3 cut(s)	24, 79, 1008
Van91I	CCANNNNNTGG	2 cut(s)	377, 599
VpaK11BI	GGWCC	2 cut(s)	283, 380
XapI	RAATTY	2 cut(s)	437, 603
XbaI	TCTAGA	1 cut(s)	502
XceI	RCATGY	1 cut(s)	766
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	3 cut(s)	477, 503, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.