RchiOBHm_Chr2g0091751

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
5424668 .. 5427960
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46692

Sequence Viewer

Length: 1158 bp
ATGAAGATGGAGTTCGTGGCATATTTGTTCATTTCGGACGGCGTGTTGAAAAACAGAAAAAGTGAAAAGCTATATATACTCCATTCTCCATCACCAATTTCTTGTACAGAAAAACCAATTATTCCTGGCAGCTCAATTCATCTCAAAATGGATAACGGAATCAAGAACGGTGCTGAAGCCATAACAGTCTCGGCTCTCAATTGTATTGATCTCTCAACCACAGATACTCACCAATCCGTCTCTCTACTCAAACAGGCCTGTTTGGATTGCGGTTTCTTCTACGTGGTAAATCATGGAATAACCGAGCAATTCATGGACGAGGTGTTTTCACAGAGCAGGAAGATGTTCAGTTTACCGTTGAGTGAAAAAATGAAGCTTTTGAGGAACAAGAAGCACAGGGGATATACCCCTCTTCTTGATGAGCATCTGGACCATGAAAACCAAGTTCATGGAGATTACAAGGAGGGGTATTACATAGGAGTTGAGGTAGCTGAAGACGACCCAAAAGCGGAAAAGCCATTTTATGGTCCTAATGTTTGGCCTGCACCAGATATCTTGCCTGGGTGGAGGGAGACCATGGAAGAATTTCATAGACAAGCCTTAGAGGTGGCTAAAGCAGTTGCTAGGCTCATAGCCCTTGCTCTTGACCTTGATGTTCATTTCTTTGATAAGCAAGAAATGCTTGGTGAGGCTATTGCGACGTTGCGCTTACTACACTATGAAGGAAAAATATCTGATCCATCAAATGGAATTTTCGGAGCTGGAGCGCATTCTGACTTCGGTCTCATTACCCTTTTGGCAACTGATGATGTCTTAGGTCTCCAAATATGCAAGGATAAGGATGCCAAACCTCAGTTGTGGGAATACGTAGCTCCGGTTAAAGGAGCATTTATAGTGAATCTTGGTGACATGCTGGAACGCTGGAGTAACTGTATTTTCAAGTCCACATTGCATAGAGTTGTAGGGAACGGTCGAGAGAGATACTCTATTGCATACTTTATAGAACCTAGTCATGATTGTCTTGTCGAGTGCTTGCCTTCCTGCAAGTCAGAAAATAACCCTCCCAAGTTTCCTCCAATCTTGTGTCAAACTTACCTGAGCCAGCGCTATAGTGATACTCATGCTGATCTGACTACCTACGGAGAAAATAAAAACTAG

Protein Analysis

385

Amino Acids

43.39

Weight (kDa)

5.68

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 67 - 182 2.5e-34 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 238 - 336 8.9e-22 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 524, 746
AciI CCGC 2 cut(s) 270, 509
AclWI GGATC 1 cut(s) 731
AcsI RAATTY 2 cut(s) 584, 750
AcuI CTGAAG 2 cut(s) 195, 513
AfaI GTAC 1 cut(s) 106
AfeI AGCGCT 1 cut(s) 1106
AfiI CCNNNNNNNGG 4 cut(s) 508, 524, 746, 881
AgsI TTSAA 2 cut(s) 49, 940
AjnI CCWGG 2 cut(s) 124, 559
AluBI AGCT 6 cut(s) 70, 132, 376, 491, 761, 872
AluI AGCT 6 cut(s) 70, 132, 376, 491, 761, 872
Alw26I GTCTC 5 cut(s) 193, 244, 566, 788, 824
AlwI GGATC 1 cut(s) 731
Aor51HI AGCGCT 1 cut(s) 1106
AoxI GGCC 2 cut(s) 255, 539
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 2 cut(s) 584, 750
Asp700I GAANNNNTTC 2 cut(s) 344, 585
AspLEI GCGC 3 cut(s) 708, 769, 1107
AspS9I GGNCC 2 cut(s) 430, 527
AsuHPI GGTGA 4 cut(s) 84, 221, 698, 917
AvaII GGWCC 2 cut(s) 430, 527
BbsI GAAGAC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 141
BccI CCATC 2 cut(s) 97, 748
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 2 cut(s) 126, 561
BcoDI GTCTC 5 cut(s) 193, 244, 566, 788, 824
BfaI CTAG 3 cut(s) 624, 1008, 1156
BfmI CTRYAG 1 cut(s) 1108
BfoI RGCGCY 1 cut(s) 1108
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 2 cut(s) 126, 561
Bme18I GGWCC 2 cut(s) 430, 527
BmgT120I GGNCC 2 cut(s) 430, 527
BmrFI CCNGG 2 cut(s) 126, 561
BmsI GCATC 2 cut(s) 433, 832
BoxI GACNNNNGTC 1 cut(s) 780
BpiI GAAGAC 1 cut(s) 501
BplI GAGNNNNNCTC 2 cut(s) 968, 1000
BpmI CTGGAG 2 cut(s) 783, 943
Bpu10I CCTNAGC 1 cut(s) 1097
BsaAI YACGTR 2 cut(s) 283, 868
BsaBI GATNNNNATC 1 cut(s) 423
BsaI GGTCTC 3 cut(s) 566, 788, 824
BsaJI CCNNGG 2 cut(s) 560, 576
BsaWI WCCGGW 1 cut(s) 874
BsaXI ACNNNNNCTCC 4 cut(s) 471, 501, 916, 946
Bsc4I CCNNNNNNNGG 4 cut(s) 508, 524, 746, 881
Bse3DI GCAATG 1 cut(s) 947
Bse8I GATNNNNATC 1 cut(s) 423
BseBI CCWGG 2 cut(s) 126, 561
BseDI CCNNGG 2 cut(s) 560, 576
BseGI GGATG 1 cut(s) 847
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 4 cut(s) 508, 524, 746, 881
BseMI GCAATG 1 cut(s) 947
BseMII CTCAG 2 cut(s) 866, 1088
BseXI GCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 528
Bsh1285I CGRYCG 1 cut(s) 973
BshFI GGCC 2 cut(s) 257, 541
BsiEI CGRYCG 1 cut(s) 973
BsiSI CCGG 1 cut(s) 875
BslI CCNNNNNNNGG 4 cut(s) 508, 524, 746, 881
BsmAI GTCTC 5 cut(s) 193, 244, 566, 788, 824
BsmBI CGTCTC 1 cut(s) 244
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 2 cut(s) 257, 541
Bso31I GGTCTC 3 cut(s) 566, 788, 824
Bsp1407I TGTACA 1 cut(s) 104
Bsp143I GATC 3 cut(s) 208, 736, 1126
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 2 cut(s) 270, 509
BspANI GGCC 2 cut(s) 257, 541
BspCNI CTCAG 2 cut(s) 865, 1089
BspHI TCATGA 1 cut(s) 1012
BspPI GGATC 1 cut(s) 731
BspTNI GGTCTC 3 cut(s) 566, 788, 824
BsrDI GCAATG 1 cut(s) 947
BsrGI TGTACA 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 560, 576
BssMI GATC 3 cut(s) 208, 736, 1126
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 2 cut(s) 126, 561
Bst4CI ACNGT 5 cut(s) 170, 187, 357, 932, 971
Bst6I CTCTTC 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 679
BstAUI TGTACA 1 cut(s) 104
BstBAI YACGTR 2 cut(s) 283, 868
BstC8I GCNNGC 3 cut(s) 543, 1034, 1103
BstDEI CTNAG 4 cut(s) 601, 814, 852, 1097
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 1 cut(s) 847
BstH2I RGCGCY 1 cut(s) 1108
BstHHI GCGC 3 cut(s) 708, 769, 1107
BstKTI GATC 3 cut(s) 211, 739, 1129
BstMAI GTCTC 5 cut(s) 193, 244, 566, 788, 824
BstMBI GATC 3 cut(s) 208, 736, 1126
BstMCI CGRYCG 1 cut(s) 973
BstMWI GCNNNNNNNGC 1 cut(s) 679
BstNI CCWGG 2 cut(s) 126, 561
BstNSI RCATGY 1 cut(s) 913
BstPAI GACNNNNGTC 1 cut(s) 780
BstSCI CCNGG 2 cut(s) 124, 559
BstSFI CTRYAG 1 cut(s) 1108
BstSNI TACGTA 1 cut(s) 868
BstV1I GCAGC 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 501
BstXI CCANNNNNNTGG 1 cut(s) 449
BsuRI GGCC 2 cut(s) 257, 541
BtgI CCRYGG 1 cut(s) 576
BtsCI GGATG 1 cut(s) 847
Cac8I GCNNGC 3 cut(s) 543, 1034, 1103
CciI TCATGA 1 cut(s) 1012
CfoI GCGC 3 cut(s) 708, 769, 1107
Cfr13I GGNCC 2 cut(s) 430, 527
Csp6I GTAC 1 cut(s) 105
CviAII CATG 8 cut(s) 293, 313, 434, 449, 577, 910, 1013, 1121
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 4 cut(s) 601, 814, 852, 1097
DpnI GATC 3 cut(s) 210, 738, 1128
DpnII GATC 3 cut(s) 208, 736, 1126
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco105I TACGTA 1 cut(s) 868
Eco130I CCWWGG 1 cut(s) 576
Eco147I AGGCCT 1 cut(s) 257
Eco31I GGTCTC 3 cut(s) 566, 788, 824
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 430, 527
Eco47III AGCGCT 1 cut(s) 1106
Eco57I CTGAAG 2 cut(s) 195, 513
EcoRII CCWGG 2 cut(s) 124, 559
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 576
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 8 cut(s) 296, 316, 437, 452, 580, 913, 1016, 1124
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FatI CATG 8 cut(s) 292, 312, 433, 448, 576, 909, 1012, 1120
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 1 cut(s) 854
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 3 cut(s) 624, 1008, 1156
GlaI GCGC 3 cut(s) 707, 768, 1106
GluI GCNGC 1 cut(s) 130
GsuI CTGGAG 2 cut(s) 783, 943
HaeII RGCGCY 1 cut(s) 1108
HaeIII GGCC 2 cut(s) 257, 541
HapII CCGG 1 cut(s) 875
HhaI GCGC 3 cut(s) 708, 769, 1107
Hin1II CATG 8 cut(s) 296, 316, 437, 452, 580, 913, 1016, 1124
Hin6I GCGC 3 cut(s) 706, 767, 1105
HinP1I GCGC 3 cut(s) 706, 767, 1105
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 2 cut(s) 159, 898
HpaII CCGG 1 cut(s) 875
HphI GGTGA 4 cut(s) 84, 221, 698, 917
Hpy166II GTNNAC 2 cut(s) 353, 945
Hpy188I TCNGA 6 cut(s) 37, 736, 758, 775, 1051, 1131
Hpy188III TCNNGA 6 cut(s) 163, 416, 428, 644, 974, 1013
Hpy8I GTNNAC 2 cut(s) 353, 945
Hpy99I CGWCG 1 cut(s) 703
HpyAV CCTTC 2 cut(s) 716, 1047
HpyCH4III ACNGT 5 cut(s) 170, 187, 357, 932, 971
HpyCH4IV ACGT 3 cut(s) 282, 701, 867
HpyCH4V TGCA 5 cut(s) 545, 831, 952, 992, 1044
HpyF10VI GCNNNNNNNGC 1 cut(s) 679
HpyF3I CTNAG 4 cut(s) 601, 814, 852, 1097
HpySE526I ACGT 3 cut(s) 282, 701, 867
Hsp92II CATG 8 cut(s) 296, 316, 437, 452, 580, 913, 1016, 1124
HspAI GCGC 3 cut(s) 706, 767, 1105
Kzo9I GATC 3 cut(s) 208, 736, 1126
LmnI GCTCC 4 cut(s) 758, 764, 877, 884
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 2 cut(s) 433, 832
MaeI CTAG 3 cut(s) 624, 1008, 1156
MaeII ACGT 3 cut(s) 282, 701, 867
MaeIII GTNAC 2 cut(s) 905, 926
MalI GATC 3 cut(s) 210, 738, 1128
MboI GATC 3 cut(s) 208, 736, 1126
MboII GAAGA 6 cut(s) 16, 268, 352, 404, 506, 593
MfeI CAATTG 1 cut(s) 199
MluCI AATT 7 cut(s) 96, 117, 135, 199, 308, 584, 750
MroXI GAANNNNTTC 2 cut(s) 344, 585
MseI TTAA 1 cut(s) 879
MspI CCGG 1 cut(s) 875
MspR9I CCNGG 2 cut(s) 126, 561
MunI CAATTG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 769
MvaI CCWGG 2 cut(s) 126, 561
MwoI GCNNNNNNNGC 1 cut(s) 679
NcoI CCATGG 1 cut(s) 576
NdeII GATC 3 cut(s) 208, 736, 1126
NlaIII CATG 8 cut(s) 296, 316, 437, 452, 580, 913, 1016, 1124
NmeAIII GCCGAG 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 905
NspI RCATGY 1 cut(s) 913
PagI TCATGA 1 cut(s) 1012
PceI AGGCCT 1 cut(s) 257
PctI GAATGC 1 cut(s) 769
PdmI GAANNNNTTC 2 cut(s) 344, 585
PfeI GAWTC 2 cut(s) 159, 898
PflMI CCANNNNNTGG 2 cut(s) 524, 746
PkrI GCNGC 1 cut(s) 131
Ppu21I YACGTR 2 cut(s) 283, 868
PshAI GACNNNNGTC 1 cut(s) 780
Psp6I CCWGG 2 cut(s) 124, 559
PspGI CCWGG 2 cut(s) 124, 559
PspPI GGNCC 2 cut(s) 430, 527
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 879
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 3 cut(s) 208, 736, 1126
Sau96I GGNCC 2 cut(s) 430, 527
ScrFI CCNGG 2 cut(s) 126, 561
SfaNI GCATC 2 cut(s) 433, 832
SfcI CTRYAG 1 cut(s) 1108
SinI GGWCC 2 cut(s) 430, 527
SnaBI TACGTA 1 cut(s) 868
Sse9I AATT 7 cut(s) 96, 117, 135, 199, 308, 584, 750
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 2 cut(s) 270, 509
SspMI CTAG 3 cut(s) 624, 1008, 1156
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 124, 559
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 5 cut(s) 170, 187, 357, 932, 971
TaiI ACGT 3 cut(s) 285, 704, 870
TaqI TCGA 2 cut(s) 973, 1026
TaqII GACCGA 1 cut(s) 770
TasI AATT 7 cut(s) 96, 117, 135, 199, 308, 584, 750
TatI WGTACW 1 cut(s) 104
TfiI GAWTC 2 cut(s) 159, 898
Tru1I TTAA 1 cut(s) 879
Tru9I TTAA 1 cut(s) 879
TseFI GTSAC 1 cut(s) 905
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 905
TspGWI ACGGA 3 cut(s) 171, 226, 1155
Van91I CCANNNNNTGG 2 cut(s) 524, 746
VpaK11BI GGWCC 2 cut(s) 430, 527
XapI RAATTY 2 cut(s) 584, 750
XceI RCATGY 1 cut(s) 913
XmnI GAANNNNTTC 2 cut(s) 344, 585
XspI CTAG 3 cut(s) 624, 1008, 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.