Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008333

Physical Location & Seq

Genomic Coordinates Forward (+)

19763856 .. 19768213

Gene Structure 4358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G221000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAAAACCAAATCGCAAACGGTGCTGTTAAAGCTGTAAGAGCCTCCGCTCTCAATTGTATCGATCTCTCAAGCTCCGATATACACCAATCTGTCTCCTTACTGAAACAGGCCAGTTTGGATTGCGGTTTTTTCTACGTGGTAAATCATGGGGTAAGCGAGAAGTTCATGGACGAGGTGTTTGCACAGAGCAGGAGGCTTTTCAGCTTACCATTGAGTGAAAAAATGAAGCTTTTGAGGAACAAGAATTACAGGGGATATACCCCTTCTCTTGATGAGCATCTGGACCATGAAAACCAAGTACACGGAGATTACAAGGAGGGGTATTATATAGGAGTTGAGCTGCCTGAAGATGACCCAGAACCGGAAAATAAGCCATTTTATGGGCCTAATGTTTGGCCTGCTCCAGATTTGTTGCCGGGGTGGAGAGACTCCATGGAGGAATATCATAGACAATGCTTGGAGGTGGCTAAAGCAGTTGCTAGGCTTGTAGCCCTTGCTCTTGATCTAGACATCCATTTCTTTGATAAACCAGAAATGATTGGCGAGGCTATTGCGACATTGCGGTTACTACACTATGATGGTCAAATTTCTGATCCATCAAATGGAATTTTTGGAGCTGGTGCTCATTCTGACTTTGGTTTTATAACCCTTTTAGCAACAGATGATGTCGTAGGTCTCCAAATATGCAAGGATAAGGATGCTAAACCTCAAATATGGGAATATGTACCACCAATTAAAGGAGCATTTATAGTGAATCTTGGCGACATGCTAGAACGCTGGAGCAACGGCATTTTCAAGTCCACGCTGCATAGAGTTGTAGGGAATGGTCAAGACAGATACTCTATGGCATACTTTATAGAACCTAGTCACAATTGTCTTGTTGAGTGCTTGCCTACCTGCAAATCTGAAAAAAACCCTCCCAAGTTTCCTCCAATCTTGTGTCGGACTTACCTGAGGCAGCGATATTACGATACTCACGCTGATCTGAATGTCTATGATGAACATAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

339

Amino Acids

38.37

Weight (kDa)

5.45

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35190 AT1G35190
fragaria_vesca	FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010
malus_domestica	MD02G1064900.v1.1
prunus_persica	Prupe.7G221000_v2.0.a1 Prupe.7G221000_v2.0.a1
pyrus_communis	pycom02g05100 pycom03g18760 pycom15g17490
rosa_chinensis	RchiOBHm_Chr2g0091751
rosa_laevigata	RLG00000016249
rosa_multiflora	Rmu_sc0000897.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149770
rosa_rugosa	Rorug02G0020300 Rorug02G0020400 Rorug02G0020500
rosa_samantha	Rh2CG065900 Rh2DG064400
rosa_wichuraiana	Rw2G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	647
Acc36I	ACCTGC	1 cut(s)	908
AccB7I	CCANNNNNTGG	2 cut(s)	383, 605
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	3 cut(s)	48, 126, 565
AclWI	GGATC	1 cut(s)	590
AcsI	RAATTY	2 cut(s)	588, 609
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	2 cut(s)	303, 729
AfiI	CCNNNNNNNGG	4 cut(s)	364, 383, 605, 740
AgsI	TTSAA	1 cut(s)	799
AluBI	AGCT	6 cut(s)	35, 75, 207, 232, 343, 620
AluI	AGCT	6 cut(s)	35, 75, 207, 232, 343, 620
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	3 cut(s)	100, 423, 683
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	3 cut(s)	111, 386, 398
ApeKI	GCWGC	3 cut(s)	343, 808, 961
ApoI	RAATTY	2 cut(s)	588, 609
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspS9I	GGNCC	2 cut(s)	286, 386
AsuC2I	CCSGG	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	286
AxyI	CCTNAGG	1 cut(s)	956
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	3 cut(s)	330, 795, 973
BccI	CCATC	2 cut(s)	575, 607
BceAI	ACGGC	1 cut(s)	805
BcgI	CGANNNNNNTGC	4 cut(s)	164, 198, 536, 570
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	100, 423, 683
BfaI	CTAG	4 cut(s)	483, 509, 773, 867
BfuAI	ACCTGC	1 cut(s)	908
BisI	GCNGC	3 cut(s)	344, 809, 962
BlsI	GCNGC	3 cut(s)	345, 810, 963
Bme1390I	CCNGG	1 cut(s)	420
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	286, 386
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	2 cut(s)	289, 691
BpmI	CTGGAG	2 cut(s)	390, 802
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	420
Bsa29I	ATCGAT	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	2 cut(s)	419, 435
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	4 cut(s)	364, 383, 605, 740
Bse1I	ACTGG	1 cut(s)	114
Bse21I	CCTNAGG	1 cut(s)	956
Bse3DI	GCAATG	1 cut(s)	560
Bse8I	GATNNNNATC	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	419, 435
BseGI	GGATG	2 cut(s)	513, 706
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	4 cut(s)	364, 383, 605, 740
BseMI	GCAATG	1 cut(s)	560
BseMII	CTCAG	1 cut(s)	947
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	330, 795, 973
BshFI	GGCC	3 cut(s)	113, 388, 400
BshVI	ATCGAT	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	2 cut(s)	365, 419
BslI	CCNNNNNNNGG	4 cut(s)	364, 383, 605, 740
BsmAI	GTCTC	3 cut(s)	100, 423, 683
BsnI	GGCC	3 cut(s)	113, 388, 400
Bso31I	GGTCTC	1 cut(s)	683
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	4 cut(s)	64, 505, 595, 985
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	3 cut(s)	48, 126, 565
BspANI	GGCC	3 cut(s)	113, 388, 400
BspCNI	CTCAG	1 cut(s)	948
BspDI	ATCGAT	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	908
BspPI	GGATC	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	683
BsrBI	CCGCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	419, 435
BssMI	GATC	4 cut(s)	64, 505, 595, 985
BssT1I	CCWWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	402, 893
BstDEI	CTNAG	1 cut(s)	956
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	2 cut(s)	513, 706
BstKTI	GATC	4 cut(s)	67, 508, 598, 988
BstMAI	GTCTC	3 cut(s)	100, 423, 683
BstMBI	GATC	4 cut(s)	64, 505, 595, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 41
BstNSI	RCATGY	1 cut(s)	772
BstSCI	CCNGG	1 cut(s)	418
BstV1I	GCAGC	3 cut(s)	330, 795, 973
Bsu15I	ATCGAT	1 cut(s)	63
Bsu36I	CCTNAGG	1 cut(s)	956
BsuRI	GGCC	3 cut(s)	113, 388, 400
BsuTUI	ATCGAT	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	513, 706
BveI	ACCTGC	1 cut(s)	908
Cac8I	GCNNGC	2 cut(s)	402, 893
Cfr13I	GGNCC	2 cut(s)	286, 386
ClaI	ATCGAT	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	302, 728
CviAII	CATG	5 cut(s)	149, 169, 290, 436, 769
CviQI	GTAC	2 cut(s)	302, 728
DdeI	CTNAG	1 cut(s)	956
DpnI	GATC	4 cut(s)	66, 507, 597, 987
DpnII	GATC	4 cut(s)	64, 505, 595, 985
Eco130I	CCWWGG	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	956
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	5 cut(s)	152, 172, 293, 439, 772
FatI	CATG	5 cut(s)	148, 168, 289, 435, 768
Fnu4HI	GCNGC	3 cut(s)	344, 809, 962
FokI	GGATG	2 cut(s)	500, 713
Fsp4HI	GCNGC	3 cut(s)	344, 809, 962
FspBI	CTAG	4 cut(s)	483, 509, 773, 867
GluI	GCNGC	3 cut(s)	344, 809, 962
GsuI	CTGGAG	2 cut(s)	390, 802
HaeIII	GGCC	3 cut(s)	113, 388, 400
HapII	CCGG	2 cut(s)	365, 419
Hin1II	CATG	5 cut(s)	152, 172, 293, 439, 772
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	431, 757
HpaII	CCGG	2 cut(s)	365, 419
Hpy166II	GTNNAC	2 cut(s)	304, 804
Hpy188I	TCNGA	6 cut(s)	79, 595, 634, 910, 948, 990
Hpy188III	TCNNGA	6 cut(s)	272, 284, 407, 503, 509, 833
Hpy8I	GTNNAC	2 cut(s)	304, 804
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	185, 690, 811, 903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 41
HpyF3I	CTNAG	1 cut(s)	956
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	152, 172, 293, 439, 772
Kzo9I	GATC	4 cut(s)	64, 505, 595, 985
LmnI	GCTCC	5 cut(s)	80, 409, 617, 743, 783
Lsp1109I	GCAGC	3 cut(s)	330, 795, 973
LweI	GCATC	2 cut(s)	289, 691
MaeI	CTAG	4 cut(s)	483, 509, 773, 867
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	567, 869
MalI	GATC	4 cut(s)	66, 507, 597, 987
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	4 cut(s)	64, 505, 595, 985
MboII	GAAGA	1 cut(s)	362
MfeI	CAATTG	2 cut(s)	55, 874
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	6 cut(s)	55, 247, 588, 609, 735, 874
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	926
MseI	TTAA	2 cut(s)	30, 738
MslI	CAYNNNNRTG	1 cut(s)	579
MspI	CCGG	2 cut(s)	365, 419
MspR9I	CCNGG	1 cut(s)	420
MunI	CAATTG	2 cut(s)	55, 874
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 41
NciI	CCSGG	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	4 cut(s)	64, 505, 595, 985
NlaIII	CATG	5 cut(s)	152, 172, 293, 439, 772
NmuCI	GTSAC	1 cut(s)	869
NspI	RCATGY	1 cut(s)	772
PfeI	GAWTC	1 cut(s)	757
PflMI	CCANNNNNTGG	2 cut(s)	383, 605
PkrI	GCNGC	3 cut(s)	345, 810, 963
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Ppu21I	YACGTR	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	647
PspPI	GGNCC	2 cut(s)	286, 386
PsrI	GAACNNNNNNTAC	2 cut(s)	233, 265
RsaI	GTAC	2 cut(s)	303, 729
RsaNI	GTAC	2 cut(s)	302, 728
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	30, 738
SatI	GCNGC	3 cut(s)	344, 809, 962
Sau3AI	GATC	4 cut(s)	64, 505, 595, 985
Sau96I	GGNCC	2 cut(s)	286, 386
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	289, 691
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	6 cut(s)	55, 247, 588, 609, 735, 874
SsiI	CCGC	3 cut(s)	48, 126, 565
SspMI	CTAG	4 cut(s)	483, 509, 773, 867
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	63
TasI	AATT	6 cut(s)	55, 247, 588, 609, 735, 874
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	1 cut(s)	757
Tru1I	TTAA	2 cut(s)	30, 738
Tru9I	TTAA	2 cut(s)	30, 738
TseFI	GTSAC	1 cut(s)	869
TseI	GCWGC	3 cut(s)	343, 808, 961
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	4 cut(s)	157, 242, 306, 1017
TspGWI	ACGGA	1 cut(s)	321
Van91I	CCANNNNNTGG	2 cut(s)	383, 605
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	2 cut(s)	588, 609
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	772
XspI	CTAG	4 cut(s)	483, 509, 773, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.