Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008333

Physical Location & Seq

Genomic Coordinates Forward (+)

87264471 .. 87267361

Gene Structure 2891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGATAACGGAATCAAGAACGGTGCTGAAGCCATAACAGTCTCGGCTCTCAATTGTATTGATCTCTCAAGCACAGATACTCACCAATCCGTCTCTCTACTCAAACAGGCCTGTTTGGATTGCGGTTTCTTCTACGTGGTAAATCATGGAATAACCGAGCAATTCATGGACGAGGTGTTTTCACAGAGCAGGAGGATGTTCAGTTTACCGTTGAGTGAAAAAATGAAGCTTTTGAGGAACAAGAAGCACAGGGGATATACCCCTCTTCTTGATGAGCATCTGGACCATGAAAACCAAGTACATGGTGATTACAAGGAGGGGTATTACATAGGAGTTGAGGTAGCTGAAGACGACCCAAAAGCGGAAAAGCCATTTTATGGTCCTAATGTTTGGCCTGCACCAGATATCTTGCCCGGGTGGAGGAAGACCATGGAAGAATTTCATAGACAAGCCTTAGAGGTGGCTAAAGCAGTTGCTAGGCTCATAGCCCTTGCTCTTGATCTAGATGTTCATTTCTTTGATAAGCAAGAAATGCTCGGTGAGGCTATTGCGACGTTGCGCTTACTACACTATGAAGGAAAAATATCTGATCCATCAAATGGAATTTTCGGAGCTGGAGCGCATTCTGACTTCGGTCTCATTACCCTTTTGGCAACTGATGATGTCTTAGGTCTCCAAATATGCAAGGATAAGGATGCCAAACCTCAGTTGTGGGAATACGTAGCACCGGTTAAAGGGTCCACATTGCATAGAGTTGTAGGGAACGGTCGAGAGAGATACTCTATTGCATACTTTATAGAACCTAGTCATGATTGTCTTGTCGAGTGCTTGCCTTCCTGCAAGTCAGAAAATAACCCTCCCAAGTTTCCTCCAATCTTGTGTCAAACTTACCTGAGCCAGCGCTATAGTGATACTCATGCTGATCTGACTACCTACGGAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

315

Amino Acids

35.39

Weight (kDa)

5.36

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	18 - 133	1.3e-34	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	189 - 268	2.9e-07	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35190 AT1G35190
fragaria_vesca	FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010 FvH4_1g06010
malus_domestica	MD02G1064900.v1.1
prunus_persica	Prupe.7G221000_v2.0.a1 Prupe.7G221000_v2.0.a1
pyrus_communis	pycom02g05100 pycom03g18760 pycom15g17490
rosa_chinensis	RchiOBHm_Chr2g0091751
rosa_laevigata	RLG00000016249
rosa_multiflora	Rmu_sc0000897.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149770
rosa_rugosa	Rorug02G0020300 Rorug02G0020400 Rorug02G0020500
rosa_samantha	Rh2CG065900 Rh2DG064400
rosa_wichuraiana	Rw2G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	377, 599
AciI	CCGC	2 cut(s)	123, 362
AclWI	GGATC	1 cut(s)	584
AcsI	RAATTY	2 cut(s)	437, 603
AcuI	CTGAAG	2 cut(s)	48, 366
AfaI	GTAC	1 cut(s)	300
AfeI	AGCGCT	1 cut(s)	902
AfiI	CCNNNNNNNGG	5 cut(s)	361, 377, 420, 599, 734
AgeI	ACCGGT	1 cut(s)	727
AluBI	AGCT	3 cut(s)	229, 344, 614
AluI	AGCT	3 cut(s)	229, 344, 614
Alw26I	GTCTC	4 cut(s)	46, 97, 641, 677
AlwI	GGATC	1 cut(s)	584
Ama87I	CYCGRG	1 cut(s)	413
Aor51HI	AGCGCT	1 cut(s)	902
AoxI	GGCC	2 cut(s)	108, 392
ApoI	RAATTY	2 cut(s)	437, 603
AsiGI	ACCGGT	1 cut(s)	727
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	3 cut(s)	561, 622, 903
AspS9I	GGNCC	3 cut(s)	283, 380, 738
AsuC2I	CCSGG	2 cut(s)	414, 415
AsuHPI	GGTGA	3 cut(s)	74, 317, 551
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	3 cut(s)	283, 380, 738
BbsI	GAAGAC	2 cut(s)	354, 431
BccI	CCATC	1 cut(s)	601
BcnI	CCSGG	2 cut(s)	414, 415
BcoDI	GTCTC	4 cut(s)	46, 97, 641, 677
BfaI	CTAG	3 cut(s)	477, 503, 804
BfmI	CTRYAG	1 cut(s)	904
BfoI	RGCGCY	1 cut(s)	904
Bme1390I	CCNGG	2 cut(s)	414, 415
Bme18I	GGWCC	3 cut(s)	283, 380, 738
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	3 cut(s)	283, 380, 738
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	2 cut(s)	414, 415
BmsI	GCATC	2 cut(s)	286, 685
BoxI	GACNNNNGTC	1 cut(s)	633
BpiI	GAAGAC	2 cut(s)	354, 431
BplI	GAGNNNNNCTC	2 cut(s)	764, 796
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	893
BpuEI	CTTGAG	1 cut(s)	52
BpuMI	CCSGG	2 cut(s)	414, 415
BsaAI	YACGTR	2 cut(s)	136, 721
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	2 cut(s)	641, 677
BsaJI	CCNNGG	2 cut(s)	413, 429
BsaWI	WCCGGW	1 cut(s)	727
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	5 cut(s)	361, 377, 420, 599, 734
Bse118I	RCCGGY	1 cut(s)	727
Bse3DI	GCAATG	1 cut(s)	743
Bse8I	GATNNNNATC	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	413, 429
BseGI	GGATG	2 cut(s)	201, 700
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	5 cut(s)	361, 377, 420, 599, 734
BseMI	GCAATG	1 cut(s)	743
BseMII	CTCAG	2 cut(s)	719, 884
BsgI	GTGCAG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	769
BshFI	GGCC	2 cut(s)	110, 394
BshTI	ACCGGT	1 cut(s)	727
BsiEI	CGRYCG	1 cut(s)	769
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	414, 728
BslI	CCNNNNNNNGG	5 cut(s)	361, 377, 420, 599, 734
BsmAI	GTCTC	4 cut(s)	46, 97, 641, 677
BsmBI	CGTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	110, 394
Bso31I	GGTCTC	2 cut(s)	641, 677
BsoBI	CYCGRG	1 cut(s)	413
Bsp143I	GATC	4 cut(s)	61, 499, 589, 922
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	2 cut(s)	123, 362
BspANI	GGCC	2 cut(s)	110, 394
BspCNI	CTCAG	2 cut(s)	718, 885
BspHI	TCATGA	1 cut(s)	808
BspLI	GGNNCC	1 cut(s)	739
BspPI	GGATC	1 cut(s)	584
BspTNI	GGTCTC	2 cut(s)	641, 677
BsrDI	GCAATG	1 cut(s)	743
BsrFI	RCCGGY	1 cut(s)	727
BssAI	RCCGGY	1 cut(s)	727
BssECI	CCNNGG	2 cut(s)	413, 429
BssMI	GATC	4 cut(s)	61, 499, 589, 922
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	4 cut(s)	23, 40, 210, 767
Bst6I	CTCTTC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstBAI	YACGTR	2 cut(s)	136, 721
BstC8I	GCNNGC	3 cut(s)	396, 830, 899
BstDEI	CTNAG	4 cut(s)	454, 667, 705, 893
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	201, 700
BstH2I	RGCGCY	1 cut(s)	904
BstHHI	GCGC	3 cut(s)	561, 622, 903
BstKTI	GATC	4 cut(s)	64, 502, 592, 925
BstMAI	GTCTC	4 cut(s)	46, 97, 641, 677
BstMBI	GATC	4 cut(s)	61, 499, 589, 922
BstMCI	CGRYCG	1 cut(s)	769
BstMWI	GCNNNNNNNGC	1 cut(s)	532
BstPAI	GACNNNNGTC	1 cut(s)	633
BstSCI	CCNGG	2 cut(s)	412, 413
BstSFI	CTRYAG	1 cut(s)	904
BstSNI	TACGTA	1 cut(s)	721
BstV2I	GAAGAC	2 cut(s)	354, 431
BstXI	CCANNNNNNTGG	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	110, 394
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	201, 700
Cac8I	GCNNGC	3 cut(s)	396, 830, 899
CciI	TCATGA	1 cut(s)	808
CfoI	GCGC	3 cut(s)	561, 622, 903
Cfr10I	RCCGGY	1 cut(s)	727
Cfr13I	GGNCC	3 cut(s)	283, 380, 738
Cfr9I	CCCGGG	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	299
CspAI	ACCGGT	1 cut(s)	727
CviAII	CATG	7 cut(s)	146, 166, 287, 302, 430, 809, 917
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	4 cut(s)	454, 667, 705, 893
DpnI	GATC	4 cut(s)	63, 501, 591, 924
DpnII	GATC	4 cut(s)	61, 499, 589, 922
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco105I	TACGTA	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	429
Eco147I	AGGCCT	1 cut(s)	110
Eco31I	GGTCTC	2 cut(s)	641, 677
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	3 cut(s)	283, 380, 738
Eco47III	AGCGCT	1 cut(s)	902
Eco57I	CTGAAG	2 cut(s)	48, 366
Eco88I	CYCGRG	1 cut(s)	413
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	7 cut(s)	149, 169, 290, 305, 433, 812, 920
FatI	CATG	7 cut(s)	145, 165, 286, 301, 429, 808, 916
FokI	GGATG	2 cut(s)	208, 707
FspBI	CTAG	3 cut(s)	477, 503, 804
GlaI	GCGC	3 cut(s)	560, 621, 902
GsuI	CTGGAG	1 cut(s)	636
HaeII	RGCGCY	1 cut(s)	904
HaeIII	GGCC	2 cut(s)	110, 394
HapII	CCGG	2 cut(s)	414, 728
HhaI	GCGC	3 cut(s)	561, 622, 903
Hin1II	CATG	7 cut(s)	149, 169, 290, 305, 433, 812, 920
Hin6I	GCGC	3 cut(s)	559, 620, 901
HinP1I	GCGC	3 cut(s)	559, 620, 901
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	2 cut(s)	414, 728
HphI	GGTGA	3 cut(s)	74, 317, 551
Hpy166II	GTNNAC	2 cut(s)	206, 741
Hpy188I	TCNGA	5 cut(s)	589, 611, 628, 847, 927
Hpy188III	TCNNGA	7 cut(s)	16, 269, 281, 497, 503, 770, 809
Hpy8I	GTNNAC	2 cut(s)	206, 741
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	2 cut(s)	569, 843
HpyCH4III	ACNGT	4 cut(s)	23, 40, 210, 767
HpyCH4IV	ACGT	3 cut(s)	135, 554, 720
HpyCH4V	TGCA	5 cut(s)	398, 684, 748, 788, 840
HpyF10VI	GCNNNNNNNGC	1 cut(s)	532
HpyF3I	CTNAG	4 cut(s)	454, 667, 705, 893
HpySE526I	ACGT	3 cut(s)	135, 554, 720
Hsp92II	CATG	7 cut(s)	149, 169, 290, 305, 433, 812, 920
HspAI	GCGC	3 cut(s)	559, 620, 901
Kzo9I	GATC	4 cut(s)	61, 499, 589, 922
LmnI	GCTCC	2 cut(s)	611, 617
LweI	GCATC	2 cut(s)	286, 685
MaeI	CTAG	3 cut(s)	477, 503, 804
MaeII	ACGT	3 cut(s)	135, 554, 720
MalI	GATC	4 cut(s)	63, 501, 591, 924
MboI	GATC	4 cut(s)	61, 499, 589, 922
MboII	GAAGA	5 cut(s)	121, 257, 359, 436, 446
MfeI	CAATTG	1 cut(s)	52
MluCI	AATT	5 cut(s)	52, 161, 437, 603, 943
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	2 cut(s)	732, 946
MspI	CCGG	2 cut(s)	414, 728
MspR9I	CCNGG	2 cut(s)	414, 415
MunI	CAATTG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	622
MwoI	GCNNNNNNNGC	1 cut(s)	532
NciI	CCSGG	2 cut(s)	414, 415
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	4 cut(s)	61, 499, 589, 922
NlaIII	CATG	7 cut(s)	149, 169, 290, 305, 433, 812, 920
NlaIV	GGNNCC	1 cut(s)	739
NmeAIII	GCCGAG	1 cut(s)	23
PagI	TCATGA	1 cut(s)	808
PceI	AGGCCT	1 cut(s)	110
PctI	GAATGC	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	12
PflMI	CCANNNNNTGG	2 cut(s)	377, 599
PinAI	ACCGGT	1 cut(s)	727
Ppu21I	YACGTR	2 cut(s)	136, 721
PshAI	GACNNNNGTC	1 cut(s)	633
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	3 cut(s)	283, 380, 738
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	732, 946
Sau3AI	GATC	4 cut(s)	61, 499, 589, 922
Sau96I	GGNCC	3 cut(s)	283, 380, 738
ScrFI	CCNGG	2 cut(s)	414, 415
SfaNI	GCATC	2 cut(s)	286, 685
SfcI	CTRYAG	1 cut(s)	904
SinI	GGWCC	3 cut(s)	283, 380, 738
SmaI	CCCGGG	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SnaBI	TACGTA	1 cut(s)	721
Sse9I	AATT	5 cut(s)	52, 161, 437, 603, 943
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	2 cut(s)	123, 362
SspMI	CTAG	3 cut(s)	477, 503, 804
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	412, 413
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	4 cut(s)	23, 40, 210, 767
TaiI	ACGT	3 cut(s)	138, 557, 723
TaqI	TCGA	2 cut(s)	769, 822
TaqII	GACCGA	1 cut(s)	623
TasI	AATT	5 cut(s)	52, 161, 437, 603, 943
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	732, 946
Tru9I	TTAA	2 cut(s)	732, 946
TspDTI	ATGAA	6 cut(s)	154, 239, 303, 431, 500, 588
TspGWI	ACGGA	2 cut(s)	24, 79
TspMI	CCCGGG	1 cut(s)	413
Van91I	CCANNNNNTGG	2 cut(s)	377, 599
VpaK11BI	GGWCC	3 cut(s)	283, 380, 738
XapI	RAATTY	2 cut(s)	437, 603
XbaI	TCTAGA	1 cut(s)	502
XmaI	CCCGGG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	3 cut(s)	477, 503, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.