AT1G36000

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011216
Physical Location & Seq
Forward (+)
13422554 .. 13423028
475 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G36000.1

Sequence Viewer

Length: 369 bp
ATGGAACCTCTAGGAAACCGTCGTCCTTGCTCCGTATGTATCACCAAAAACAGAAATTGTCCCAGATTCTGCGAATATGCAGAATACTTTCCATATGAATTGCAAAGTCAATATGAAAGTGCTAATGAATTGTTTGGCACACCAAATATCATTACGATGATGCAGCATGCTCCTGAAGAAAAAAAACAAATGCTAGCAACTTCTATAATCATGGAAGGTAATGCTTGGACAGAAGATCCTATAAGTGGTGGATTCGGTATGATTCAAAAGCTCATGTGGAAGATTATGTTACACAAAGCCTACCTCCGTGAACTCCAGGAGAAGATTAAGGAAGAGAAGGAAAAAAAACCAGCCTCGTCTTTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

122

Amino Acids

14.26

Weight (kDa)

6.73

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 9 - 106 2.1e-25 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 266
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
AlwI GGATC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 34
AsuNHI GCTAGC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 317
BfaI CTAG 2 cut(s) 11, 194
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 150
BmtI GCTAGC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 317
BseLI CCNNNNNNNGG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 175
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 197
BspPI GGATC 1 cut(s) 230
BssMI GATC 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 168, 195
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 168, 195
CaiI CAGNNNCTG 1 cut(s) 69
CviAII CATG 3 cut(s) 167, 211, 274
CviJI RGCY 3 cut(s) 271, 299, 353
CviKI_1 RGCY 3 cut(s) 271, 299, 353
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 315
FaeI CATG 3 cut(s) 170, 214, 277
FaqI GGGAC 1 cut(s) 45
FatI CATG 3 cut(s) 166, 210, 273
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 2 cut(s) 11, 194
GluI GCNGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 299
Hin1II CATG 3 cut(s) 170, 214, 277
HinfI GANTC 3 cut(s) 66, 252, 262
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 311
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 311
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 209, 331
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 80, 103, 163
Hsp92II CATG 3 cut(s) 170, 214, 277
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 35, 175
LpnPI CCDG 5 cut(s) 76, 186, 302, 329, 363
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 150
MaeI CTAG 2 cut(s) 11, 194
MaeIII GTNAC 1 cut(s) 288
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 5 cut(s) 188, 245, 292, 334, 344
MflI RGATCY 1 cut(s) 235
MluCI AATT 3 cut(s) 55, 98, 128
MnlI CCTC 3 cut(s) 18, 314, 364
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 317
NdeI CATATG 1 cut(s) 94
NdeII GATC 1 cut(s) 235
NheI GCTAGC 1 cut(s) 193
NlaIII CATG 3 cut(s) 170, 214, 277
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 170
PaeI GCATGC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 3 cut(s) 66, 252, 262
PfoI TCCNGGA 1 cut(s) 315
PkrI GCNGC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 69
PsuI RGATCY 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 317
SetI ASST 4 cut(s) 10, 220, 273, 306
SfaNI GCATC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 155
SphI GCATGC 1 cut(s) 170
Sse9I AATT 3 cut(s) 55, 98, 128
SspMI CTAG 2 cut(s) 11, 194
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 20
TasI AATT 3 cut(s) 55, 98, 128
TfiI GAWTC 3 cut(s) 66, 252, 262
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 111, 129, 141
TspGWI ACGGA 2 cut(s) 22, 296
XceI RCATGY 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 2 cut(s) 11, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.