MD15G1207900.v1.1

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011216
Physical Location & Seq
Reverse (-)
16544404 .. 16544709
306 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1207900.v1.1.491

Sequence Viewer

Length: 306 bp
ATGTTCGGTATGAGCAATGTTGAAAAGATTATAGCCACAGTCGAGCCGGATCAAAGACCAGCAGCGGCTGAGACTATACTCCTTGAAGGGAATATATGGAGGAATAATCCTTCAGTTGGTTGCCTTGGTGTTACCAGATTCCTCCTTGAACAAGTAGATTTCCATGAGAAAGAACTTGAGGTGACAAATCGATATCTAGCATTTTACAGGGAATTAAAAAAGCAGTTCGATTCACTCAAAATACAATCAGCACAAGAAGCATCGGTCGTCCCTGATCAAGTAAGCCATGATTTTAATTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

102

Amino Acids

11.62

Weight (kDa)

4.92

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 1 - 63 1.5e-10 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 65
AclWI GGATC 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 3 cut(s) 23, 86, 149
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 1 cut(s) 57
AlwNI CAGNNNCTG 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 193
BbvI GCAGC 1 cut(s) 74
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 197
BisI GCNGC 2 cut(s) 63, 66
BlsI GCNGC 2 cut(s) 64, 67
BmsI GCATC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 197
Bsa29I ATCGAT 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 22
BseCI ATCGAT 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 267
BshVI ATCGAT 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 267
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 49, 274
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 61
BspDI ATCGAT 1 cut(s) 190
BspPI GGATC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 2 cut(s) 49, 274
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 69
BstKTI GATC 2 cut(s) 52, 277
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 2 cut(s) 49, 274
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 74
Bsu15I ATCGAT 1 cut(s) 190
BsuTUI ATCGAT 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 68
ClaI ATCGAT 1 cut(s) 190
CviAII CATG 2 cut(s) 164, 287
CviJI RGCY 4 cut(s) 35, 46, 68, 285
CviKI_1 RGCY 4 cut(s) 35, 46, 68, 285
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 51, 276
DpnII GATC 2 cut(s) 49, 274
Eco130I CCWWGG 1 cut(s) 124
Eco32I GATATC 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 96
EcoRV GATATC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 2 cut(s) 167, 290
FaiI YATR 7 cut(s) 11, 32, 77, 95, 97, 165, 288
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 163, 286
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 63, 66
Fsp4HI GCNGC 2 cut(s) 63, 66
FspBI CTAG 1 cut(s) 197
GluI GCNGC 2 cut(s) 63, 66
HapII CCGG 1 cut(s) 47
Hin1II CATG 2 cut(s) 167, 290
HinfI GANTC 2 cut(s) 138, 230
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 80, 120
HpyCH4III ACNGT 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 2 cut(s) 167, 290
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 49, 274
LpnPI CCDG 5 cut(s) 60, 72, 148, 193, 285
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 269
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 130, 181
MalI GATC 2 cut(s) 51, 276
MboI GATC 2 cut(s) 49, 274
MluCI AATT 2 cut(s) 212, 295
MnlI CCTC 3 cut(s) 93, 152, 172
MseI TTAA 2 cut(s) 215, 294
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 2 cut(s) 49, 274
NlaIII CATG 2 cut(s) 167, 290
NmuCI GTSAC 1 cut(s) 181
PfeI GAWTC 2 cut(s) 138, 230
PkrI GCNGC 2 cut(s) 64, 67
PstNI CAGNNNCTG 1 cut(s) 68
SaqAI TTAA 2 cut(s) 215, 294
SatI GCNGC 2 cut(s) 63, 66
Sau3AI GATC 2 cut(s) 49, 274
SetI ASST 1 cut(s) 183
SfaNI GCATC 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 212, 295
SsiI CCGC 1 cut(s) 65
SspMI CTAG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 3 cut(s) 42, 190, 228
TaqII GACCGA 1 cut(s) 253
TasI AATT 2 cut(s) 212, 295
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 2 cut(s) 138, 230
Tru1I TTAA 2 cut(s) 215, 294
Tru9I TTAA 2 cut(s) 215, 294
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 181
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.