FvH4_1g07590

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011216
Physical Location & Seq
Reverse (-)
4032266 .. 4033285
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07590.t1

Sequence Viewer

Length: 579 bp
ATGTCTCTACCAGTCATGGATACGGAGAGTTCACCATCACCTGTAAATCATGCTTGTGCTTCTTGCAAGCACCAGAGAAAGAAGTGCGACTCCAACTGTGAATTGGCTCCATACTTTCCGGGGAGCAAGTACAATGAGTTTCAGAACGCTCACAAACTTTTCGGTGTGAGCAACATAGTGAAGATCATGTCCTGGATTGAACCACATCAAAGACAAGCTGCTGCTGATTCCATACTCATTGAAGGGAACGCTTGGAAGAATGATCCTGTGCATGGTTGCTATGGTGTGATCAAAGATCTAGCAGCCCAGGTTGCGTTTCAGGAAAAACAACTCAGTGTTGTGAATCAACACCTAGCTTTTCATAAACAGCAGCAAAAGATAAAGCTAGAACAAGATCAATCTGATTATTTCAGTGACCTTCCTGACCTACCAGATGAATTAATGGGAGACGTGAAAGTTTTTGAACGTGGACACAATTACCGACCGAATTTGGTCGGAGCTGCAGATGAGGAGAGGTCCTTTGACATGGAGCTCAGAGATGAGGACGAGAATCCCAGTACAAGTTTCAATGGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

193

Amino Acids

21.72

Weight (kDa)

5.2

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 18 - 115 1.8e-33 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 487
AfaI GTAC 2 cut(s) 131, 559
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 4 cut(s) 200, 242, 464, 568
AjiI CACGTC 1 cut(s) 451
AjnI CCWGG 2 cut(s) 191, 306
AluBI AGCT 5 cut(s) 218, 356, 385, 500, 532
AluI AGCT 5 cut(s) 218, 356, 385, 500, 532
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 2 cut(s) 9, 441
AlwI GGATC 1 cut(s) 257
ApeKI GCWGC 5 cut(s) 218, 221, 302, 370, 500
ApoI RAATTY 1 cut(s) 487
AseI ATTAAT 1 cut(s) 440
AspS9I GGNCC 1 cut(s) 516
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 24, 30
AvaII GGWCC 1 cut(s) 516
BanII GRGCYC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 5 cut(s) 205, 208, 314, 382, 487
BccI CCATC 1 cut(s) 43
BciT130I CCWGG 2 cut(s) 193, 308
BciVI GTATCC 1 cut(s) 13
BclI TGATCA 1 cut(s) 288
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 9, 441
BfaI CTAG 3 cut(s) 299, 353, 386
BfmI CTRYAG 1 cut(s) 501
BfuI GTATCC 1 cut(s) 13
BglII AGATCT 1 cut(s) 295
BisI GCNGC 5 cut(s) 219, 222, 303, 371, 501
BlsI GCNGC 5 cut(s) 220, 223, 304, 372, 502
Bme1390I CCNGG 3 cut(s) 120, 193, 308
Bme18I GGWCC 1 cut(s) 516
BmgBI CACGTC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 3 cut(s) 120, 193, 308
BmrI ACTGGG 1 cut(s) 549
BmuI ACTGGG 1 cut(s) 549
BpuMI CCSGG 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 119, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 2 cut(s) 11, 555
BseBI CCWGG 2 cut(s) 193, 308
BseDI CCNNGG 2 cut(s) 119, 306
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 2 cut(s) 346, 547
BseNI ACTGG 2 cut(s) 11, 555
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 5 cut(s) 205, 208, 314, 382, 487
Bsh1285I CGRYCG 1 cut(s) 485
BsiEI CGRYCG 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 2 cut(s) 9, 441
BsmBI CGTCTC 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 5 cut(s) 183, 262, 288, 295, 394
BspCNI CTCAG 2 cut(s) 345, 546
BspLI GGNNCC 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 505
BspPI GGATC 1 cut(s) 257
BsrI ACTGG 2 cut(s) 11, 555
BssECI CCNNGG 2 cut(s) 119, 306
BssMI GATC 5 cut(s) 183, 262, 288, 295, 394
Bst2UI CCWGG 2 cut(s) 193, 308
Bst4CI ACNGT 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 332, 533
BstKTI GATC 5 cut(s) 186, 265, 291, 298, 397
BstMAI GTCTC 2 cut(s) 9, 441
BstMBI GATC 5 cut(s) 183, 262, 288, 295, 394
BstMCI CGRYCG 1 cut(s) 485
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 193, 308
BstSCI CCNGG 3 cut(s) 118, 191, 306
BstSFI CTRYAG 1 cut(s) 501
BstV1I GCAGC 5 cut(s) 205, 208, 314, 382, 487
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuI GTATCC 1 cut(s) 13
BtrI CACGTC 1 cut(s) 451
BtsIMutI CAGTG 2 cut(s) 340, 418
Cac8I GCNNGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 516
Csp6I GTAC 2 cut(s) 130, 558
CviAII CATG 5 cut(s) 16, 50, 187, 272, 526
CviJI RGCY 7 cut(s) 107, 218, 305, 356, 385, 500, 532
CviKI_1 RGCY 7 cut(s) 107, 218, 305, 356, 385, 500, 532
CviQI GTAC 2 cut(s) 130, 558
DdeI CTNAG 2 cut(s) 332, 533
DpnI GATC 5 cut(s) 185, 264, 290, 297, 396
DpnII GATC 5 cut(s) 183, 262, 288, 295, 394
Ecl136II GAGCTC 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 516
Eco53kI GAGCTC 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 516
EcoRII CCWGG 2 cut(s) 191, 306
EcoT38I GRGCYC 1 cut(s) 534
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 5 cut(s) 19, 53, 190, 275, 529
FatI CATG 5 cut(s) 15, 49, 186, 271, 525
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 5 cut(s) 219, 222, 303, 371, 501
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 5 cut(s) 219, 222, 303, 371, 501
FspBI CTAG 3 cut(s) 299, 353, 386
GluI GCNGC 5 cut(s) 219, 222, 303, 371, 501
HapII CCGG 1 cut(s) 119
Hin1II CATG 5 cut(s) 19, 53, 190, 275, 529
HinfI GANTC 4 cut(s) 89, 227, 343, 550
HpaII CCGG 1 cut(s) 119
HphI GGTGA 2 cut(s) 24, 30
Hpy166II GTNNAC 2 cut(s) 32, 470
Hpy188I TCNGA 4 cut(s) 144, 403, 497, 536
Hpy188III TCNNGA 2 cut(s) 320, 422
Hpy8I GTNNAC 2 cut(s) 32, 470
HpyAV CCTTC 2 cut(s) 236, 428
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 2 cut(s) 450, 466
HpyCH4V TGCA 3 cut(s) 66, 271, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 332, 533
HpySE526I ACGT 2 cut(s) 450, 466
Hsp92II CATG 5 cut(s) 19, 53, 190, 275, 529
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 5 cut(s) 183, 262, 288, 295, 394
LmnI GCTCC 4 cut(s) 112, 123, 497, 529
Lsp1109I GCAGC 5 cut(s) 205, 208, 314, 382, 487
MaeI CTAG 3 cut(s) 299, 353, 386
MaeII ACGT 2 cut(s) 450, 466
MaeIII GTNAC 1 cut(s) 413
MalI GATC 5 cut(s) 185, 264, 290, 297, 396
MboI GATC 5 cut(s) 183, 262, 288, 295, 394
MboII GAAGA 2 cut(s) 193, 268
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 4 cut(s) 101, 437, 475, 487
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 2 cut(s) 117, 475
MnlI CCTC 3 cut(s) 502, 507, 535
MseI TTAA 1 cut(s) 440
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 3 cut(s) 120, 193, 308
MvaI CCWGG 2 cut(s) 193, 308
MwoI GCNNNNNNNGC 1 cut(s) 311
NciI CCSGG 1 cut(s) 120
NdeII GATC 5 cut(s) 183, 262, 288, 295, 394
NlaIII CATG 5 cut(s) 19, 53, 190, 275, 529
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 413
PfeI GAWTC 3 cut(s) 227, 343, 550
PfoI TCCNGGA 1 cut(s) 191
PkrI GCNGC 5 cut(s) 220, 223, 304, 372, 502
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 516
PshBI ATTAAT 1 cut(s) 440
Psp124BI GAGCTC 1 cut(s) 534
Psp5II RGGWCCY 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 191, 306
PspGI CCWGG 2 cut(s) 191, 306
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 516
PspPPI RGGWCCY 1 cut(s) 516
PstI CTGCAG 1 cut(s) 505
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 2 cut(s) 131, 559
RsaNI GTAC 2 cut(s) 130, 558
RseI CAYNNNNRTG 1 cut(s) 54
SacI GAGCTC 1 cut(s) 534
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 5 cut(s) 219, 222, 303, 371, 501
Sau3AI GATC 5 cut(s) 183, 262, 288, 295, 394
Sau96I GGNCC 1 cut(s) 516
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 3 cut(s) 120, 193, 308
SduI GDGCHC 1 cut(s) 534
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 4 cut(s) 101, 437, 475, 487
SspMI CTAG 3 cut(s) 299, 353, 386
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 118, 191, 306
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 2 cut(s) 453, 469
TaqII GACCGA 1 cut(s) 499
TasI AATT 4 cut(s) 101, 437, 475, 487
TatI WGTACW 2 cut(s) 129, 557
TfiI GAWTC 3 cut(s) 227, 343, 550
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 2 cut(s) 340, 418
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 5 cut(s) 218, 221, 302, 370, 500
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 350, 450
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 2 cut(s) 340, 418
VpaK11BI GGWCC 1 cut(s) 516
VspI ATTAAT 1 cut(s) 440
XapI RAATTY 1 cut(s) 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 3 cut(s) 299, 353, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.