Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011216

Physical Location & Seq

Genomic Coordinates Forward (+)

5116190 .. 5117439

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G071200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAAAATAGGGATCAAGGTGCAGCTCAAAACCATGCTTGTGCTTCCTGCAACCATCAGAGGAGAAAATGTGATGAGACCTGTGAAATGGCCCCATACTTTCCAGCCAGCAGGTACAATGAGTTCCAAAATGCTCATAAGATCTTTTGTGTGAGCAACATCCAAAAGATCATGGCCATGGCTGCACCTGATCAAAGACAGGCAGCTGCTGAAAGCCTTCCCACGGAAGGGAATGCAAGGAAAAATGATCCTGACCTTCTCCTTATAGACACAATCAGCTGTAATGAAGCTATCAAACTAATCGGTAGCAATATCAAGCTATACAAGCTGCCGCTGGTTTCCTTAAGACAACTTCAGGCACCAATGCTTATGCCTCTACGACAGTCGGACAGAAGATGCAAACCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

137

Amino Acids

15.32

Weight (kDa)

8.73

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36000 AT2G19510 AT2G19820
fragaria_vesca	FvH4_1g07590
malus_domestica	MD15G1207900.v1.1 MD15G1208000.v1.1
prunus_persica	Prupe.3G071200_v2.0.a1 Prupe.7G145700_v2.0.a1 Prupe.7G208700_v2.0.a1 Prupe.7G209000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093461
rosa_laevigata	RLG00000016408
rosa_multiflora	Rmu_sc0004086.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148070
rosa_rugosa	Rorug02G0036600
rosa_samantha	Rh2AG082900 Rh2BG083600 Rh2CG085600 Rh2DG081700
rosa_wichuraiana	Rw2G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	358
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	2 cut(s)	21, 242
AcoI	YGGCCR	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	3 cut(s)	223, 227, 228
AflII	CTTAAG	1 cut(s)	343
AluBI	AGCT	7 cut(s)	26, 206, 279, 290, 319, 328, 408
AluI	AGCT	7 cut(s)	26, 206, 279, 290, 319, 328, 408
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	21, 242
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	90, 174
ApeKI	GCWGC	5 cut(s)	23, 182, 203, 206, 328
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	358
BbvI	GCAGC	5 cut(s)	35, 169, 193, 215, 315
BccI	CCATC	1 cut(s)	63
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	6 cut(s)	24, 183, 204, 207, 329, 332
BlsI	GCNGC	6 cut(s)	25, 184, 205, 208, 330, 333
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	2 cut(s)	93, 360
BmsI	GCATC	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	177, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 227, 228
BseDI	CCNNGG	2 cut(s)	177, 222
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	223, 227, 228
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	5 cut(s)	35, 169, 193, 215, 315
BsgI	GTGCAG	2 cut(s)	42, 168
BshFI	GGCC	2 cut(s)	92, 176
BshNI	GGYRCC	1 cut(s)	358
BslI	CCNNNNNNNGG	3 cut(s)	223, 227, 228
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	92, 176
Bso31I	GGTCTC	1 cut(s)	71
Bsp143I	GATC	5 cut(s)	13, 141, 168, 190, 247
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	2 cut(s)	92, 176
BspLI	GGNNCC	2 cut(s)	93, 360
BspMI	ACCTGC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	21, 242
BspT107I	GGYRCC	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	177, 222
BssMI	GATC	5 cut(s)	13, 141, 168, 190, 247
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	384
BstAFI	CTTAAG	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	109
BstDSI	CCRYGG	2 cut(s)	177, 222
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	5 cut(s)	16, 144, 171, 193, 250
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	5 cut(s)	13, 141, 168, 190, 247
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 325, 405
BstV1I	GCAGC	5 cut(s)	35, 169, 193, 215, 315
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	92, 176
BtgI	CCRYGG	2 cut(s)	177, 222
BtsCI	GGATG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	3 cut(s)	35, 172, 178
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	5 cut(s)	15, 143, 170, 192, 249
DpnII	GATC	5 cut(s)	13, 141, 168, 190, 247
EaeI	YGGCCR	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	38, 175, 181
FaiI	YATR	8 cut(s)	36, 97, 138, 173, 179, 266, 322, 371
FatI	CATG	3 cut(s)	34, 171, 177
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	6 cut(s)	24, 183, 204, 207, 329, 332
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	6 cut(s)	24, 183, 204, 207, 329, 332
GluI	GCNGC	6 cut(s)	24, 183, 204, 207, 329, 332
HaeIII	GGCC	2 cut(s)	92, 176
Hin1II	CATG	3 cut(s)	38, 175, 181
Hpy188I	TCNGA	2 cut(s)	60, 388
Hpy188III	TCNNGA	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	221, 227, 266
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4V	TGCA	5 cut(s)	23, 51, 185, 236, 399
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 325, 405
Hsp92II	CATG	3 cut(s)	38, 175, 181
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	13, 141, 168, 190, 247
Lsp1109I	GCAGC	5 cut(s)	35, 169, 193, 215, 315
LweI	GCATC	1 cut(s)	386
MalI	GATC	5 cut(s)	15, 143, 170, 192, 249
MboI	GATC	5 cut(s)	13, 141, 168, 190, 247
MboII	GAAGA	1 cut(s)	405
MflI	RGATCY	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	176
MluNI	TGGCCA	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	2 cut(s)	54, 384
Mox20I	TGGCCA	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	2 cut(s)	39, 176
Msp20I	TGGCCA	1 cut(s)	176
MspA1I	CMGCKG	3 cut(s)	206, 279, 334
MspCI	CTTAAG	1 cut(s)	343
Mva1269I	GAATGC	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	182, 325, 405
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	5 cut(s)	13, 141, 168, 190, 247
NlaIII	CATG	3 cut(s)	38, 175, 181
NlaIV	GGNNCC	2 cut(s)	93, 360
PctI	GAATGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	216
PkrI	GCNGC	6 cut(s)	25, 184, 205, 208, 330, 333
PspN4I	GGNNCC	2 cut(s)	93, 360
PspPI	GGNCC	1 cut(s)	91
PsrI	GAACNNNNNNTAC	2 cut(s)	107, 139
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	141
PvuII	CAGCTG	2 cut(s)	206, 279
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	2 cut(s)	39, 176
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	6 cut(s)	24, 183, 204, 207, 329, 332
Sau3AI	GATC	5 cut(s)	13, 141, 168, 190, 247
Sau96I	GGNCC	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	386
SmiMI	CAYNNNNRTG	2 cut(s)	39, 176
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SsiI	CCGC	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	384
TauI	GCSGC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseI	GCWGC	5 cut(s)	23, 182, 203, 206, 328
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	239
Vha464I	CTTAAG	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.