Prupe.7G209000_v2.0.a1

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011216
Physical Location & Seq
Forward (+)
19170795 .. 19174752
3958 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G209000.1

Sequence Viewer

Length: 573 bp
ATGGAAAATAGGGATCAGGGTGCAGCTCAAAACCATGCTTGTGCTTCCTGCAAGCAGCAGAGGAGAAAATGTGATGAGACCTGTGAAATGGCCCCATACTTTCTAGCCAGCCGGTACAGTGAGTTCCAAAATGCTCATAAGATCTTTGGTGTGAGCAACATCCAAAAGATCATGGCCATGGCTGCACCTGATCAAAGACAGGCAGCTGCTGAAAGCATTCTCACGGAAGGGAATGCAAGGAAAAATGATCCTTTGAATGGTTGTCTTGGCATTATCAGAGGTCTCAATGCCCAAATTCAGGGACTTGAAAGAGAACTCCATATTATGAAACAGCACCTAGAACTTTGCAAGGAGAAGGAAGAACTTGATGGGAAAAAAAACCAATCAAAAGAAGAAGACTTGCAGCATGATCAATCTGATGGTCTCAATTCACTAATCCTTCCTGATCTGCGCCTAGGCCGATATCTCGAACACTGCTCAAAACCTGTAACGGGCTTGCTCTGTGCCCTAGACGTTCGTAGTGATGAGTTCAAGTTCGATTCGCCAGAATATTTTTTCAAAAACCAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

191

Amino Acids

21.56

Weight (kDa)

5.89

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 21, 242
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 294
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 3 cut(s) 257, 298, 491
AgsI TTSAA 4 cut(s) 256, 308, 532, 559
AluBI AGCT 2 cut(s) 26, 206
AluI AGCT 2 cut(s) 26, 206
Alw26I GTCTC 3 cut(s) 71, 287, 428
AlwI GGATC 2 cut(s) 21, 242
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 3 cut(s) 90, 174, 457
ApeKI GCWGC 6 cut(s) 23, 55, 182, 203, 206, 403
ApoI RAATTY 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 216
AspA2I CCTAGG 1 cut(s) 454
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 91
AvrII CCTAGG 1 cut(s) 454
BaeGI GKGCMC 1 cut(s) 508
BalI TGGCCA 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 6 cut(s) 35, 67, 169, 193, 215, 415
BccI CCATC 2 cut(s) 362, 413
BclI TGATCA 2 cut(s) 190, 409
BcoDI GTCTC 3 cut(s) 71, 287, 428
BfaI CTAG 4 cut(s) 104, 338, 455, 509
BglII AGATCT 1 cut(s) 141
BisI GCNGC 6 cut(s) 24, 56, 183, 204, 207, 404
BlnI CCTAGG 1 cut(s) 454
BlsI GCNGC 6 cut(s) 25, 57, 184, 205, 208, 405
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 402
BsaI GGTCTC 3 cut(s) 71, 287, 428
BsaJI CCNNGG 2 cut(s) 177, 454
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 298, 491
Bse118I RCCGGY 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 177, 454
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 3 cut(s) 257, 298, 491
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 6 cut(s) 35, 67, 169, 193, 215, 415
BsgI GTGCAG 2 cut(s) 42, 168
BshFI GGCC 3 cut(s) 92, 176, 459
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 3 cut(s) 257, 298, 491
BsmAI GTCTC 3 cut(s) 71, 287, 428
BsmFI GGGAC 1 cut(s) 315
BsmI GAATGC 2 cut(s) 216, 238
BsnI GGCC 3 cut(s) 92, 176, 459
Bso31I GGTCTC 3 cut(s) 71, 287, 428
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 7 cut(s) 13, 141, 168, 190, 247, 409, 445
Bsp19I CCATGG 1 cut(s) 177
BspANI GGCC 3 cut(s) 92, 176, 459
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 21, 242
BspTNI GGTCTC 3 cut(s) 71, 287, 428
BsrFI RCCGGY 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 177, 454
BssMI GATC 7 cut(s) 13, 141, 168, 190, 247, 409, 445
BssT1I CCWWGG 2 cut(s) 177, 454
Bst4CI ACNGT 1 cut(s) 119
BstC8I GCNNGC 3 cut(s) 53, 109, 497
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 7 cut(s) 16, 144, 171, 193, 250, 412, 448
BstMAI GTCTC 3 cut(s) 71, 287, 428
BstMBI GATC 7 cut(s) 13, 141, 168, 190, 247, 409, 445
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSLI GKGCMC 1 cut(s) 508
BstV1I GCAGC 6 cut(s) 35, 67, 169, 193, 215, 415
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 3 cut(s) 92, 176, 459
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 2 cut(s) 124, 472
Cac8I GCNNGC 3 cut(s) 53, 109, 497
CaiI CAGNNNCTG 1 cut(s) 209
CfoI GCGC 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 115
CviAII CATG 4 cut(s) 35, 172, 178, 407
CviJI RGCY 9 cut(s) 26, 92, 107, 111, 176, 182, 206, 459, 495
CviKI_1 RGCY 9 cut(s) 26, 92, 107, 111, 176, 182, 206, 459, 495
CviQI GTAC 1 cut(s) 115
DpnI GATC 7 cut(s) 15, 143, 170, 192, 249, 411, 447
DpnII GATC 7 cut(s) 13, 141, 168, 190, 247, 409, 445
EaeI YGGCCR 1 cut(s) 174
Eco130I CCWWGG 2 cut(s) 177, 454
Eco31I GGTCTC 3 cut(s) 71, 287, 428
Eco32I GATATC 1 cut(s) 464
EcoRV GATATC 1 cut(s) 464
EcoT14I CCWWGG 2 cut(s) 177, 454
ErhI CCWWGG 2 cut(s) 177, 454
FaeI CATG 4 cut(s) 38, 175, 181, 410
FaiI YATR 9 cut(s) 36, 97, 138, 173, 179, 321, 326, 408, 571
FaqI GGGAC 1 cut(s) 315
FatI CATG 4 cut(s) 34, 171, 177, 406
FbaI TGATCA 2 cut(s) 190, 409
Fnu4HI GCNGC 6 cut(s) 24, 56, 183, 204, 207, 404
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 6 cut(s) 24, 56, 183, 204, 207, 404
FspBI CTAG 4 cut(s) 104, 338, 455, 509
GlaI GCGC 1 cut(s) 452
GluI GCNGC 6 cut(s) 24, 56, 183, 204, 207, 404
HaeIII GGCC 3 cut(s) 92, 176, 459
HapII CCGG 1 cut(s) 112
HhaI GCGC 1 cut(s) 453
Hin1II CATG 4 cut(s) 38, 175, 181, 410
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HinfI GANTC 1 cut(s) 539
HpaII CCGG 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 278, 418
Hpy188III TCNNGA 2 cut(s) 443, 467
HpyAV CCTTC 3 cut(s) 221, 349, 449
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 6 cut(s) 23, 51, 185, 236, 348, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 4 cut(s) 38, 175, 181, 410
HspAI GCGC 1 cut(s) 451
Ksp22I TGATCA 2 cut(s) 190, 409
Kzo9I GATC 7 cut(s) 13, 141, 168, 190, 247, 409, 445
Lsp1109I GCAGC 6 cut(s) 35, 67, 169, 193, 215, 415
MaeI CTAG 4 cut(s) 104, 338, 455, 509
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 487
MalI GATC 7 cut(s) 15, 143, 170, 192, 249, 411, 447
MboI GATC 7 cut(s) 13, 141, 168, 190, 247, 409, 445
MboII GAAGA 3 cut(s) 371, 404, 407
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 508
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 2 cut(s) 294, 427
MluNI TGGCCA 1 cut(s) 176
MnlI CCTC 2 cut(s) 54, 272
Mox20I TGGCCA 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 216
MscI TGGCCA 1 cut(s) 176
MslI CAYNNNNRTG 2 cut(s) 39, 176
Msp20I TGGCCA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 112
Mva1269I GAATGC 2 cut(s) 216, 238
MwoI GCNNNNNNNGC 1 cut(s) 182
NcoI CCATGG 1 cut(s) 177
NdeII GATC 7 cut(s) 13, 141, 168, 190, 247, 409, 445
NlaIII CATG 4 cut(s) 38, 175, 181, 410
NlaIV GGNNCC 1 cut(s) 93
PctI GAATGC 2 cut(s) 216, 238
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 539
PkrI GCNGC 6 cut(s) 25, 57, 184, 205, 208, 405
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 91
PsrI GAACNNNNNNTAC 2 cut(s) 107, 139
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 2 cut(s) 39, 176
SatI GCNGC 6 cut(s) 24, 56, 183, 204, 207, 404
Sau3AI GATC 7 cut(s) 13, 141, 168, 190, 247, 409, 445
Sau96I GGNCC 1 cut(s) 91
SduI GDGCHC 1 cut(s) 508
SetI ASST 8 cut(s) 28, 83, 190, 208, 283, 339, 487, 516
SmiMI CAYNNNNRTG 2 cut(s) 39, 176
Sse9I AATT 2 cut(s) 294, 427
SspI AATATT 1 cut(s) 551
SspMI CTAG 4 cut(s) 104, 338, 455, 509
StyI CCWWGG 2 cut(s) 177, 454
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 1 cut(s) 516
TaqI TCGA 2 cut(s) 468, 537
TasI AATT 2 cut(s) 294, 427
TfiI GAWTC 1 cut(s) 539
TscAI CASTG 2 cut(s) 124, 479
TseI GCWGC 6 cut(s) 23, 55, 182, 203, 206, 403
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 2 cut(s) 124, 479
XapI RAATTY 1 cut(s) 294
XmaJI CCTAGG 1 cut(s) 454
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 4 cut(s) 104, 338, 455, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.