AT2G19820

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011216
Physical Location & Seq
Reverse (-)
8553543 .. 8554040
498 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19820.1

Sequence Viewer

Length: 375 bp
ATGGATGTCTCGAGAGTCAATGTTAAACGTGCTCCTTGTGCTCTATGCACCACCAAAAACAAACGCTGTCCCAAAAAATGTGATTTTGCACCATATTTTCCTGCCGAAAGAAAAGGTGAATATGAAAATGCACATAAGTTATTTGGTACGTCAAATATTATTAAGATGATGAGGTTCGCGTCCAAAGACAAACAAAGAGACATGTTGGCATCGTCCATACTCATGGAAGGTGACGCTTGGAAAAAAGATCCAGCGAGAGGTGGATTTGGAATGATCCAAAAATTAAAGTGGCAAATTGAATTACGCAAAATCTACCTCAATGAACTAAAGGAGAAGATTAAAGTTGAAAAAGAAAAAACAGAGCTCCGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

124

Amino Acids

14.49

Weight (kDa)

9.77

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 12 - 109 1e-28 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 179
AclWI GGATC 2 cut(s) 242, 268
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 2 cut(s) 299, 347
AluBI AGCT 1 cut(s) 364
AluI AGCT 1 cut(s) 364
Alw21I GWGCWC 3 cut(s) 34, 43, 366
Alw26I GTCTC 2 cut(s) 13, 192
AlwI GGATC 2 cut(s) 242, 268
Ama87I CYCGRG 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 128, 242
AvaI CYCGRG 1 cut(s) 10
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 3 cut(s) 34, 43, 366
BcoDI GTCTC 2 cut(s) 13, 192
BmeT110I CYCGRG 1 cut(s) 10
BmsI GCATC 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 179
BsiHKAI GWGCWC 3 cut(s) 34, 43, 366
BsiHKCI CYCGRG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 13, 192
BsmFI GGGAC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 10
Bsp1286I GDGCHC 3 cut(s) 34, 43, 366
Bsp143I GATC 2 cut(s) 247, 273
BspFNI CGCG 1 cut(s) 179
BspPI GGATC 2 cut(s) 242, 268
BssMI GATC 2 cut(s) 247, 273
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 2 cut(s) 250, 276
BstMAI GTCTC 2 cut(s) 13, 192
BstMBI GATC 2 cut(s) 247, 273
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 205
BstUI CGCG 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 1 cut(s) 247
BtsCI GGATG 1 cut(s) 10
CseI GACGC 2 cut(s) 168, 242
Csp6I GTAC 1 cut(s) 147
CviAII CATG 2 cut(s) 202, 223
CviJI RGCY 1 cut(s) 364
CviKI_1 RGCY 1 cut(s) 364
CviQI GTAC 1 cut(s) 147
DpnI GATC 2 cut(s) 249, 275
DpnII GATC 2 cut(s) 247, 273
Ecl136II GAGCTC 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 2 cut(s) 205, 226
FaiI YATR 7 cut(s) 46, 94, 123, 135, 203, 218, 224
FaqI GGGAC 1 cut(s) 54
FatI CATG 2 cut(s) 201, 222
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 366
HgaI GACGC 2 cut(s) 168, 242
Hin1II CATG 2 cut(s) 205, 226
HinfI GANTC 1 cut(s) 15
HphI GGTGA 2 cut(s) 128, 242
Hpy188III TCNNGA 2 cut(s) 10, 12
HpyAV CCTTC 1 cut(s) 221
HpyCH4IV ACGT 2 cut(s) 28, 149
HpyCH4V TGCA 3 cut(s) 48, 89, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpySE526I ACGT 2 cut(s) 28, 149
Hsp92II CATG 2 cut(s) 205, 226
Kzo9I GATC 2 cut(s) 247, 273
LmnI GCTCC 2 cut(s) 37, 369
LpnPI CCDG 2 cut(s) 114, 264
LweI GCATC 1 cut(s) 218
MaeII ACGT 2 cut(s) 28, 149
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 249, 275
MboI GATC 2 cut(s) 247, 273
MboII GAAGA 1 cut(s) 346
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 3 cut(s) 34, 43, 366
MluCI AATT 3 cut(s) 281, 294, 299
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 3 cut(s) 165, 251, 326
MseI TTAA 5 cut(s) 24, 162, 284, 339, 373
MslI CAYNNNNRTG 1 cut(s) 221
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 2 cut(s) 247, 273
NlaIII CATG 2 cut(s) 205, 226
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 10
PciI ACATGT 1 cut(s) 201
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PscI ACATGT 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 366
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 221
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 5 cut(s) 24, 162, 284, 339, 373
Sau3AI GATC 2 cut(s) 247, 273
SchI GAGTC 1 cut(s) 24
SduI GDGCHC 3 cut(s) 34, 43, 366
SetI ASST 8 cut(s) 31, 118, 152, 176, 232, 262, 318, 366
SfaNI GCATC 1 cut(s) 218
Sfr274I CTCGAG 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 3 cut(s) 281, 294, 299
SspI AATATT 1 cut(s) 157
SstI GAGCTC 1 cut(s) 366
TaiI ACGT 2 cut(s) 31, 152
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 281, 294, 299
Tru1I TTAA 5 cut(s) 24, 162, 284, 339, 373
Tru9I TTAA 5 cut(s) 24, 162, 284, 339, 373
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 138, 336
TspGWI ACGGA 1 cut(s) 356
XceI RCATGY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.