Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004086.1

Orthogroup ID

OG0011216

Physical Location & Seq

Genomic Coordinates Forward (+)

18800 .. 20943

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004086.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atggatagggagagttcaccatcacctctaaatcaagcttgtgcttcttgcaagcaccagagaaagaaatgtgactccaactgtgaattggctccatactttccggcgaacaagtaccatgagtttcagaacgctcacaaactttttggcgtgagcaacatactgaagatcatagcctcgattgaaccacataaaagaaaagctgctgctgaatccatactctttgaagggaacgcttggaagagtgatcctgtgcatggttgcctcggtgtgatcaaagatctgacagcccagatgtcgtttcatgaaaaacaactcagtgttgtgaatcaacacctagcatttcataaggagcagcaaaagaaagagcaagaacaagatcaatctgattttctcaatgatgagcttcctgatctacccgatgaactaatggaagacatgaaaatttttgaacatggacacaattactggtcaaatttggtcggagcagatgaggagaagccctttgacatggaacacacagaagcatttgatgagcaagtaaatccccttacatatttcaatggacaagctggagaatgcagggcagaacgtgatgtggataattattcaaagcaaaagaaaacaaactgggctttgccaccccccaaaaaccaccacaggcccgatccaaaagaaaatgaaggaaatggaaggcccactgttacagacccagcccaaaaccctagtttgaaactagggtttcccttcaagaaacccggagacagatcggccgactccgacacctccaccaaagcttggccagtatcaatcgccattaccaacccagttcaccaagttgtcgtcatcctcccctctccccgagatcggcttgtagtaaatcgtcggaagagcagtgaccagtcactaatccgatggcaggccattgtcccccactcccccaccatcaccttgctctcaatggaaagaagctctgcccccaacctggattcactcacacgcgatcaacaacaaaagtcagaagccgccttccttgggacaacaccaatctctgacgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

353

Amino Acids

39.83

Weight (kDa)

6.02

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36000 AT2G19510 AT2G19820
fragaria_vesca	FvH4_1g07590
malus_domestica	MD15G1207900.v1.1 MD15G1208000.v1.1
prunus_persica	Prupe.3G071200_v2.0.a1 Prupe.7G145700_v2.0.a1 Prupe.7G208700_v2.0.a1 Prupe.7G209000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093461
rosa_laevigata	RLG00000016408
rosa_multiflora	Rmu_sc0004086.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148070
rosa_rugosa	Rorug02G0036600
rosa_samantha	Rh2AG082900 Rh2BG083600 Rh2CG085600 Rh2DG081700
rosa_wichuraiana	Rw2G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	798
AccII	CGCG	1 cut(s)	1002
AciI	CCGC	1 cut(s)	1026
AclWI	GGATC	2 cut(s)	242, 662
AcoI	YGGCCR	2 cut(s)	771, 800
AcsI	RAATTY	2 cut(s)	444, 475
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	6 cut(s)	257, 798, 867, 919, 985, 1035
AgsI	TTSAA	7 cut(s)	185, 227, 452, 562, 612, 733, 751
AjnI	CCWGG	1 cut(s)	984
AluBI	AGCT	6 cut(s)	38, 203, 406, 572, 797, 972
AluI	AGCT	6 cut(s)	38, 203, 406, 572, 797, 972
Alw26I	GTCTC	1 cut(s)	756
AlwI	GGATC	2 cut(s)	242, 662
Ama87I	CYCGRG	1 cut(s)	861
AoxI	GGCC	5 cut(s)	662, 695, 771, 800, 921
ApeKI	GCWGC	3 cut(s)	203, 206, 355
ApoI	RAATTY	2 cut(s)	444, 475
AspS9I	GGNCC	2 cut(s)	663, 696
AsuC2I	CCSGG	1 cut(s)	759
AsuHPI	GGTGA	4 cut(s)	9, 15, 824, 940
AvaI	CYCGRG	1 cut(s)	861
BalI	TGGCCA	1 cut(s)	802
BbsI	GAAGAC	1 cut(s)	441
BbvI	GCAGC	3 cut(s)	190, 193, 367
BccI	CCATC	3 cut(s)	28, 909, 953
BciT130I	CCWGG	1 cut(s)	986
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	759
BcoDI	GTCTC	1 cut(s)	756
BfaI	CTAG	3 cut(s)	338, 726, 737
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	4 cut(s)	204, 207, 356, 1026
BlsI	GCNGC	4 cut(s)	205, 208, 357, 1027
Bme1390I	CCNGG	2 cut(s)	759, 986
BmeT110I	CYCGRG	1 cut(s)	861
BmgT120I	GGNCC	2 cut(s)	663, 696
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	759, 986
BmrI	ACTGGG	2 cut(s)	640, 821
BmuI	ACTGGG	2 cut(s)	640, 821
BpiI	GAAGAC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	594
BpuMI	CCSGG	1 cut(s)	759
BsaJI	CCNNGG	2 cut(s)	265, 1033
Bsc4I	CCNNNNNNNGG	6 cut(s)	257, 798, 867, 919, 985, 1035
Bse1I	ACTGG	5 cut(s)	473, 635, 803, 827, 901
BseBI	CCWGG	1 cut(s)	986
BseDI	CCNNGG	2 cut(s)	265, 1033
BseGI	GGATG	1 cut(s)	846
BseLI	CCNNNNNNNGG	6 cut(s)	257, 798, 867, 919, 985, 1035
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	5 cut(s)	473, 635, 803, 827, 901
BseRI	GAGGAG	1 cut(s)	509
BseX3I	CGGCCG	1 cut(s)	771
BseXI	GCAGC	3 cut(s)	190, 193, 367
BseYI	CCCAGC	1 cut(s)	712
Bsh1236I	CGCG	1 cut(s)	1002
Bsh1285I	CGRYCG	1 cut(s)	774
BshFI	GGCC	5 cut(s)	664, 697, 773, 802, 923
BsiEI	CGRYCG	1 cut(s)	774
BsiHKCI	CYCGRG	1 cut(s)	861
BsiSI	CCGG	2 cut(s)	104, 759
BslFI	GGGAC	2 cut(s)	914, 1051
BslI	CCNNNNNNNGG	6 cut(s)	257, 798, 867, 919, 985, 1035
BsmAI	GTCTC	1 cut(s)	756
BsmFI	GGGAC	2 cut(s)	914, 1051
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	5 cut(s)	664, 697, 773, 802, 923
BsoBI	CYCGRG	1 cut(s)	861
BspACI	CCGC	1 cut(s)	1026
BspANI	GGCC	5 cut(s)	664, 697, 773, 802, 923
BspCNI	CTCAG	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	1002
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	2 cut(s)	242, 662
BspQI	GCTCTTC	1 cut(s)	884
BsrI	ACTGG	5 cut(s)	473, 635, 803, 827, 901
BssECI	CCNNGG	2 cut(s)	265, 1033
BssT1I	CCWWGG	1 cut(s)	1033
Bst2UI	CCWGG	1 cut(s)	986
Bst4CI	ACNGT	2 cut(s)	83, 703
Bst6I	CTCTTC	2 cut(s)	236, 884
BstC8I	GCNNGC	2 cut(s)	53, 921
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	846
BstFNI	CGCG	1 cut(s)	1002
BstMAI	GTCTC	1 cut(s)	756
BstMCI	CGRYCG	1 cut(s)	774
BstNI	CCWGG	1 cut(s)	986
BstSCI	CCNGG	2 cut(s)	757, 984
BstUI	CGCG	1 cut(s)	1002
BstV1I	GCAGC	3 cut(s)	190, 193, 367
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BstZI	CGGCCG	1 cut(s)	771
BsuRI	GGCC	5 cut(s)	664, 697, 773, 802, 923
BtsCI	GGATG	1 cut(s)	846
BtsI	GCAGTG	1 cut(s)	901
BtsIMutI	CAGTG	3 cut(s)	325, 699, 901
Cac8I	GCNNGC	2 cut(s)	53, 921
CciI	TCATGA	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	663, 696
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	6 cut(s)	119, 257, 305, 439, 455, 511
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	317
EaeI	YGGCCR	2 cut(s)	771, 800
EagI	CGGCCG	1 cut(s)	771
Eam1104I	CTCTTC	2 cut(s)	236, 884
EarI	CTCTTC	2 cut(s)	236, 884
EclXI	CGGCCG	1 cut(s)	771
Eco130I	CCWWGG	1 cut(s)	1033
Eco52I	CGGCCG	1 cut(s)	771
Eco57I	CTGAAG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	861
EcoRII	CCWGG	1 cut(s)	984
EcoT14I	CCWWGG	1 cut(s)	1033
ErhI	CCWWGG	1 cut(s)	1033
FaeI	CATG	6 cut(s)	122, 260, 308, 442, 458, 514
FaqI	GGGAC	2 cut(s)	914, 1051
FatI	CATG	6 cut(s)	118, 256, 304, 438, 454, 510
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	204, 207, 356, 1026
FokI	GGATG	1 cut(s)	833
Fsp4HI	GCNGC	4 cut(s)	204, 207, 356, 1026
FspBI	CTAG	3 cut(s)	338, 726, 737
GluI	GCNGC	4 cut(s)	204, 207, 356, 1026
GsaI	CCCAGC	1 cut(s)	716
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	5 cut(s)	664, 697, 773, 802, 923
HapII	CCGG	2 cut(s)	104, 759
Hin1II	CATG	6 cut(s)	122, 260, 308, 442, 458, 514
HindIII	AAGCTT	2 cut(s)	36, 795
HinfI	GANTC	5 cut(s)	74, 212, 328, 776, 989
HpaII	CCGG	2 cut(s)	104, 759
HphI	GGTGA	4 cut(s)	9, 15, 824, 940
Hpy166II	GTNNAC	2 cut(s)	17, 832
Hpy188I	TCNGA	9 cut(s)	129, 285, 388, 485, 781, 888, 914, 1021, 1054
Hpy188III	TCNNGA	3 cut(s)	305, 410, 751
Hpy8I	GTNNAC	2 cut(s)	17, 832
Hpy99I	CGWCG	1 cut(s)	888
HpyAV	CCTTC	5 cut(s)	221, 677, 687, 757, 1039
HpyCH4III	ACNGT	2 cut(s)	83, 703
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	3 cut(s)	51, 256, 582
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	6 cut(s)	122, 260, 308, 442, 458, 514
Ksp22I	TGATCA	1 cut(s)	273
LguI	GCTCTTC	1 cut(s)	884
LmnI	GCTCC	3 cut(s)	97, 352, 485
Lsp1109I	GCAGC	3 cut(s)	190, 193, 367
MaeI	CTAG	3 cut(s)	338, 726, 737
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	4 cut(s)	71, 703, 896, 903
MboII	GAAGA	4 cut(s)	178, 253, 446, 901
MflI	RGATCY	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	802
MluCI	AATT	5 cut(s)	86, 444, 463, 475, 604
MluNI	TGGCCA	1 cut(s)	802
MlyI	GAGTC	2 cut(s)	68, 770
MmeI	TCCRAC	4 cut(s)	102, 463, 804, 866
MnlI	CCTC	7 cut(s)	36, 187, 275, 487, 796, 860, 865
Mox20I	TGGCCA	1 cut(s)	802
MscI	TGGCCA	1 cut(s)	802
Msp20I	TGGCCA	1 cut(s)	802
MspI	CCGG	2 cut(s)	104, 759
MspR9I	CCNGG	2 cut(s)	759, 986
Mva1269I	GAATGC	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	986
MvnI	CGCG	1 cut(s)	1002
NciI	CCSGG	1 cut(s)	759
NlaIII	CATG	6 cut(s)	122, 260, 308, 442, 458, 514
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	3 cut(s)	71, 896, 903
PagI	TCATGA	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	884
PctI	GAATGC	1 cut(s)	584
PfeI	GAWTC	3 cut(s)	212, 328, 989
PflMI	CCANNNNNTGG	1 cut(s)	798
PkrI	GCNGC	4 cut(s)	205, 208, 357, 1027
PleI	GAGTC	2 cut(s)	68, 770
PpsI	GAGTC	2 cut(s)	68, 770
Psp6I	CCWGG	1 cut(s)	984
PspFI	CCCAGC	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	984
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	663, 696
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	884
SatI	GCNGC	4 cut(s)	204, 207, 356, 1026
Sau96I	GGNCC	2 cut(s)	663, 696
SchI	GAGTC	2 cut(s)	68, 770
ScrFI	CCNGG	2 cut(s)	759, 986
Sse9I	AATT	5 cut(s)	86, 444, 463, 475, 604
SsiI	CCGC	1 cut(s)	1026
SspMI	CTAG	3 cut(s)	338, 726, 737
StyD4I	CCNGG	2 cut(s)	757, 984
StyI	CCWWGG	1 cut(s)	1033
TaaI	ACNGT	2 cut(s)	83, 703
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	1 cut(s)	179
TasI	AATT	5 cut(s)	86, 444, 463, 475, 604
TauI	GCSGC	1 cut(s)	1028
TfiI	GAWTC	3 cut(s)	212, 328, 989
TscAI	CASTG	3 cut(s)	325, 706, 901
TseFI	GTSAC	3 cut(s)	71, 896, 903
TseI	GCWGC	3 cut(s)	203, 206, 355
Tsp45I	GTSAC	3 cut(s)	71, 896, 903
TspDTI	ATGAA	6 cut(s)	293, 321, 335, 438, 455, 696
TspRI	CASTG	3 cut(s)	325, 706, 901
Van91I	CCANNNNNTGG	1 cut(s)	798
XapI	RAATTY	2 cut(s)	444, 475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	3 cut(s)	338, 726, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.