Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011216

Physical Location & Seq

Genomic Coordinates Reverse (-)

2884850 .. 2887257

Gene Structure 2408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0036600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGTCAAGCTCTCTTCTTCCTCTCTTCATCTCCTAGCTTTATCCAAAAAGCTTGCTCTCCCCAATCTCACAAGAAGAACCCTTTGCTCAATTCCCACCACCATGTCCATAAACCTCCAGTCTCATGCCTTTGCTGGCAATCCTATGAGATCCAAGACCCCAAAACCCAGTGACCCATTTTCACCAACCCAAGCCCTTGAGACCCTCAAGACTCGACTTTTGGACAATCCCCACTTGCCCTCTTCTTCACCAAGCTTCAAGGTGCTGCCTTTCAGAAAGGGCAGGCCTTTGGCCTCAACCATTGGTGGGATCAGTGATTTGAAGCCAACATGGTATCTGGGTTGGATCAGTTTGGCTGATTGTAAAGGCTTGTTGGGGAATTGTGGGGTTGAGTTGAGTGGTGACTCATTGGTGTATCTGGGTTCAAGGCCTGAGGAGGATGCGGTTTATTGGGCTATGGATGTGTCTAAGGAGGATGGTGTGGTTCCTGAATTGGGTGGGAAGCAATTGTGTTTTGTTGAGCTCAGAACACTTATGGTGGCTACTGATTGGGCTGATGAAAGGGCTATGGCAGAGTTGGCTGTTGCTGGCCATGCCAGGGCTTTGCTTGAGTGGCACAGTACATCACTGTTTTGTGGACATTGTGGAGAAAAGACAGTCCCCAAGGAAGCTGGGAGACGCAAGCAGTGTTCTAGTGAGCTTTGCAAAAAGCGGGTCTACCCTCGTGTTGATCCGGTTGTCATAATGTTAGTTATTGATAAAGAGAATGACCGTGCTCTGTTGAGTAGACAATCCCGATTTGTTCCTAGAATGTGGAGTTGCTTAGCTGGTTTTATAGAGCCAGGAGAAAGCTTAGAAGAAGCGGTGAAGAGAGAAACATGGGAGGAGACCGGTATTGAAGTAGGAGAAGTTGTCTATCATAGCTCTCAACCATGGCCTGTTGGACCAAGTAGCATGCCATGCCAGTTGATGGTTGGTTTCTTTGCATATGCCAAATCACTTGAAATAAATGTCGACAAGGAAGAGTTGGAAGACGCCCAATGGCACAGTAGAGAAGATGTAAAAAAAGCTTTGACATTTACTGAATATGAGAAGGCACAGAAAACAGCGGCAGAGAAGGTTGAGCAGATGTGCAGGGGCGTTGAGAAAGGGCAGAACTTTTCTGCAGACTACAGTGTGGAAAGTGGCGAACTTACTCCCATGTTTATACCGGGGCCATTTGCAATTGCCCATCACCTCATCTCTTCTTGGGTCTATCAGGATGCACCAGACAGTGTTGAAGCACCTCCAAAACATCCTTGTGGTTCAAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

438

Amino Acids

48.47

Weight (kDa)

6.05

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX-like	PF09296	88 - 205	9.3e-07	NADH pyrophosphatase-like rudimentary NUDIX domain
Zn_ribbon_NUD	PF09297	207 - 232	2.9e-07	NADH pyrophosphatase zinc ribbon domain
NUDIX	PF00293	246 - 357	3.6e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36000 AT2G19510 AT2G19820
fragaria_vesca	FvH4_1g07590
malus_domestica	MD15G1207900.v1.1 MD15G1208000.v1.1
prunus_persica	Prupe.3G071200_v2.0.a1 Prupe.7G145700_v2.0.a1 Prupe.7G208700_v2.0.a1 Prupe.7G209000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093461
rosa_laevigata	RLG00000016408
rosa_multiflora	Rmu_sc0004086.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148070
rosa_rugosa	Rorug02G0036600
rosa_samantha	Rh2AG082900 Rh2BG083600 Rh2CG085600 Rh2DG081700
rosa_wichuraiana	Rw2G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	970
AccI	GTMKAC	3 cut(s)	717, 787, 1014
AciI	CCGC	4 cut(s)	443, 712, 863, 1109
AclWI	GGATC	4 cut(s)	144, 317, 353, 725
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	1309
AcyI	GRCGYC	1 cut(s)	1035
AfaI	GTAC	1 cut(s)	622
AfiI	CCNNNNNNNGG	4 cut(s)	306, 494, 598, 970
AgeI	ACCGGT	1 cut(s)	890
AgsI	TTSAA	7 cut(s)	259, 322, 426, 899, 1004, 1280, 1308
AjnI	CCWGG	2 cut(s)	596, 841
Alw21I	GWGCWC	2 cut(s)	525, 778
Alw26I	GTCTC	4 cut(s)	126, 194, 670, 881
AlwI	GGATC	4 cut(s)	144, 317, 353, 725
AoxI	GGCC	6 cut(s)	284, 291, 428, 589, 935, 1214
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	1309
ArsI	GACNNNNNNTTYG	4 cut(s)	202, 234, 699, 731
AsiGI	ACCGGT	1 cut(s)	890
AspS9I	GGNCC	2 cut(s)	944, 1214
AsuC2I	CCSGG	1 cut(s)	1212
AsuHPI	GGTGA	5 cut(s)	174, 240, 413, 877, 1226
AvaII	GGWCC	1 cut(s)	944
AxyI	CCTNAGG	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	591
BanII	GRGCYC	1 cut(s)	525
BauI	CACGAG	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	1038
Bbv12I	GWGCWC	2 cut(s)	525, 778
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	3 cut(s)	470, 964, 1239
BciT130I	CCWGG	2 cut(s)	598, 843
BcnI	CCSGG	1 cut(s)	1212
BcoDI	GTCTC	4 cut(s)	126, 194, 670, 881
BfaI	CTAG	3 cut(s)	35, 693, 807
BfmI	CTRYAG	2 cut(s)	1164, 1171
BisI	GCNGC	2 cut(s)	266, 1110
BlpI	GCTNAGC	1 cut(s)	823
BlsI	GCNGC	2 cut(s)	267, 1111
Bme1390I	CCNGG	3 cut(s)	598, 843, 1212
Bme18I	GGWCC	1 cut(s)	944
BmgT120I	GGNCC	2 cut(s)	944, 1214
BmiI	GGNNCC	2 cut(s)	486, 1215
BmrFI	CCNGG	3 cut(s)	598, 843, 1212
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	430, 1252
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	1038
BpmI	CTGGAG	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	823
BpuEI	CTTGAG	3 cut(s)	191, 218, 629
BpuMI	CCSGG	1 cut(s)	1212
BsaHI	GRCGYC	1 cut(s)	1035
BsaI	GGTCTC	2 cut(s)	194, 881
BsaJI	CCNNGG	4 cut(s)	597, 663, 932, 1211
BsaWI	WCCGGW	2 cut(s)	733, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	897, 927
Bsc4I	CCNNNNNNNGG	4 cut(s)	306, 494, 598, 970
Bse118I	RCCGGY	1 cut(s)	890
Bse1I	ACTGG	3 cut(s)	118, 168, 964
Bse21I	CCTNAGG	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	598, 843
BseDI	CCNNGG	4 cut(s)	597, 663, 932, 1211
BseGI	GGATG	5 cut(s)	445, 466, 481, 1267, 1294
BseLI	CCNNNNNNNGG	4 cut(s)	306, 494, 598, 970
BseMII	CTCAG	2 cut(s)	423, 538
BseNI	ACTGG	3 cut(s)	118, 168, 964
BseRI	GAGGAG	2 cut(s)	449, 899
BseXI	GCAGC	1 cut(s)	252
BseYI	CCCAGC	1 cut(s)	671
BsgI	GTGCAG	1 cut(s)	1153
BshFI	GGCC	6 cut(s)	286, 293, 430, 591, 937, 1216
BshTI	ACCGGT	1 cut(s)	890
BsiHKAI	GWGCWC	2 cut(s)	525, 778
BsiSI	CCGG	3 cut(s)	734, 891, 1211
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	4 cut(s)	306, 494, 598, 970
BsmAI	GTCTC	4 cut(s)	126, 194, 670, 881
BsmBI	CGTCTC	1 cut(s)	670
BsmFI	GGGAC	1 cut(s)	644
BsnI	GGCC	6 cut(s)	286, 293, 430, 591, 937, 1216
Bso31I	GGTCTC	2 cut(s)	194, 881
Bsp1286I	GDGCHC	2 cut(s)	525, 778
Bsp143I	GATC	4 cut(s)	149, 309, 345, 730
Bsp1720I	GCTNAGC	1 cut(s)	823
Bsp19I	CCATGG	1 cut(s)	932
BspACI	CCGC	4 cut(s)	443, 712, 863, 1109
BspANI	GGCC	6 cut(s)	286, 293, 430, 591, 937, 1216
BspCNI	CTCAG	2 cut(s)	424, 537
BspLI	GGNNCC	2 cut(s)	486, 1215
BspMAI	CTGCAG	1 cut(s)	1168
BspPI	GGATC	4 cut(s)	144, 317, 353, 725
BspTNI	GGTCTC	2 cut(s)	194, 881
BsrFI	RCCGGY	1 cut(s)	890
BsrI	ACTGG	3 cut(s)	118, 168, 964
BssAI	RCCGGY	1 cut(s)	890
BssECI	CCNNGG	4 cut(s)	597, 663, 932, 1211
BssMI	GATC	4 cut(s)	149, 309, 345, 730
BssNI	GRCGYC	1 cut(s)	1035
BssSI	CACGAG	1 cut(s)	723
BssT1I	CCWWGG	2 cut(s)	663, 932
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	2 cut(s)	598, 843
Bst4CI	ACNGT	7 cut(s)	620, 630, 658, 773, 1049, 1175, 1274
Bst6I	CTCTTC	6 cut(s)	19, 30, 247, 863, 1017, 1249
BstACI	GRCGYC	1 cut(s)	1035
BstAPI	GCANNNNNTGC	1 cut(s)	960
BstC8I	GCNNGC	6 cut(s)	54, 136, 284, 589, 683, 956
BstDEI	CTNAG	5 cut(s)	432, 468, 524, 823, 853
BstDSI	CCRYGG	1 cut(s)	932
BstF5I	GGATG	5 cut(s)	445, 466, 481, 1267, 1294
BstKTI	GATC	4 cut(s)	152, 312, 348, 733
BstMAI	GTCTC	4 cut(s)	126, 194, 670, 881
BstMBI	GATC	4 cut(s)	149, 309, 345, 730
BstMWI	GCNNNNNNNGC	4 cut(s)	578, 593, 613, 960
BstNI	CCWGG	2 cut(s)	598, 843
BstNSI	RCATGY	1 cut(s)	958
BstSCI	CCNGG	3 cut(s)	596, 841, 1210
BstSFI	CTRYAG	2 cut(s)	1164, 1171
BstV1I	GCAGC	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	1038
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	6 cut(s)	286, 293, 430, 591, 937, 1216
BtgI	CCRYGG	1 cut(s)	932
BtsCI	GGATG	5 cut(s)	445, 466, 481, 1267, 1294
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	6 cut(s)	175, 319, 626, 692, 1180, 1279
Cac8I	GCNNGC	6 cut(s)	54, 136, 284, 589, 683, 956
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	2 cut(s)	944, 1214
CseI	GACGC	2 cut(s)	687, 1043
Csp6I	GTAC	1 cut(s)	621
CspAI	ACCGGT	1 cut(s)	890
CviAII	CATG	9 cut(s)	103, 125, 330, 593, 879, 933, 955, 960, 1201
CviQI	GTAC	1 cut(s)	621
DdeI	CTNAG	5 cut(s)	432, 468, 524, 823, 853
DpnI	GATC	4 cut(s)	151, 311, 347, 732
DpnII	GATC	4 cut(s)	149, 309, 345, 730
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	6 cut(s)	19, 30, 247, 863, 1017, 1249
EarI	CTCTTC	6 cut(s)	19, 30, 247, 863, 1017, 1249
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	2 cut(s)	663, 932
Eco147I	AGGCCT	2 cut(s)	286, 430
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	2 cut(s)	194, 881
Eco47I	GGWCC	1 cut(s)	944
Eco53kI	GAGCTC	1 cut(s)	523
Eco81I	CCTNAGG	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	523
EcoRII	CCWGG	2 cut(s)	596, 841
EcoT14I	CCWWGG	2 cut(s)	663, 932
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	2 cut(s)	663, 932
Esp3I	CGTCTC	1 cut(s)	670
FaeI	CATG	9 cut(s)	106, 128, 333, 596, 882, 936, 958, 963, 1204
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	9 cut(s)	102, 124, 329, 592, 878, 932, 954, 959, 1200
FauI	CCCGC	1 cut(s)	705
FauNDI	CATATG	1 cut(s)	988
FblI	GTMKAC	3 cut(s)	717, 787, 1014
Fnu4HI	GCNGC	2 cut(s)	266, 1110
FokI	GGATG	5 cut(s)	452, 473, 488, 1274, 1281
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	2 cut(s)	266, 1110
FspBI	CTAG	3 cut(s)	35, 693, 807
GluI	GCNGC	2 cut(s)	266, 1110
GsaI	CCCAGC	1 cut(s)	675
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	6 cut(s)	286, 293, 430, 591, 937, 1216
HapII	CCGG	3 cut(s)	734, 891, 1211
HgaI	GACGC	2 cut(s)	687, 1043
Hin1I	GRCGYC	1 cut(s)	1035
Hin1II	CATG	9 cut(s)	106, 128, 333, 596, 882, 936, 958, 963, 1204
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HindIII	AAGCTT	4 cut(s)	50, 253, 850, 1068
HinfI	GANTC	2 cut(s)	211, 404
HpaII	CCGG	3 cut(s)	734, 891, 1211
HphI	GGTGA	5 cut(s)	174, 240, 413, 877, 1226
Hpy166II	GTNNAC	4 cut(s)	638, 718, 788, 1015
Hpy188I	TCNGA	2 cut(s)	275, 527
Hpy188III	TCNNGA	4 cut(s)	208, 488, 795, 1259
Hpy8I	GTNNAC	4 cut(s)	638, 718, 788, 1015
HpyAV	CCTTC	2 cut(s)	1087, 1111
HpyCH4III	ACNGT	7 cut(s)	620, 630, 658, 773, 1049, 1175, 1274
HpyCH4V	TGCA	6 cut(s)	705, 986, 1134, 1166, 1223, 1265
HpyF10VI	GCNNNNNNNGC	4 cut(s)	578, 593, 613, 960
HpyF3I	CTNAG	5 cut(s)	432, 468, 524, 823, 853
Hsp92I	GRCGYC	1 cut(s)	1035
Hsp92II	CATG	9 cut(s)	106, 128, 333, 596, 882, 936, 958, 963, 1204
Kzo9I	GATC	4 cut(s)	149, 309, 345, 730
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	2 cut(s)	430, 1252
MaeI	CTAG	3 cut(s)	35, 693, 807
MaeIII	GTNAC	2 cut(s)	170, 401
MalI	GATC	4 cut(s)	151, 311, 347, 732
MboI	GATC	4 cut(s)	149, 309, 345, 730
MfeI	CAATTG	2 cut(s)	506, 1224
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	2 cut(s)	525, 778
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	6 cut(s)	90, 379, 491, 506, 1224, 1309
MluNI	TGGCCA	1 cut(s)	591
MlyI	GAGTC	2 cut(s)	205, 398
MmeI	TCCRAC	3 cut(s)	323, 922, 1008
Mox20I	TGGCCA	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	591
MslI	CAYNNNNRTG	2 cut(s)	101, 1299
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	1109
MspI	CCGG	3 cut(s)	734, 891, 1211
MspR9I	CCNGG	3 cut(s)	598, 843, 1212
MunI	CAATTG	2 cut(s)	506, 1224
MvaI	CCWGG	2 cut(s)	598, 843
MwoI	GCNNNNNNNGC	4 cut(s)	578, 593, 613, 960
NciI	CCSGG	1 cut(s)	1212
NcoI	CCATGG	1 cut(s)	932
NdeI	CATATG	1 cut(s)	988
NdeII	GATC	4 cut(s)	149, 309, 345, 730
NlaIII	CATG	9 cut(s)	106, 128, 333, 596, 882, 936, 958, 963, 1204
NlaIV	GGNNCC	2 cut(s)	486, 1215
NmuCI	GTSAC	2 cut(s)	170, 401
NspI	RCATGY	1 cut(s)	958
PaeI	GCATGC	1 cut(s)	958
PceI	AGGCCT	2 cut(s)	286, 430
PflMI	CCANNNNNTGG	1 cut(s)	970
PinAI	ACCGGT	1 cut(s)	890
PkrI	GCNGC	2 cut(s)	267, 1111
PleI	GAGTC	2 cut(s)	205, 398
PpsI	GAGTC	2 cut(s)	205, 398
Psp124BI	GAGCTC	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	596, 841
PspFI	CCCAGC	1 cut(s)	671
PspGI	CCWGG	2 cut(s)	596, 841
PspN4I	GGNNCC	2 cut(s)	486, 1215
PspPI	GGNCC	2 cut(s)	944, 1214
PstI	CTGCAG	1 cut(s)	1168
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	1 cut(s)	622
RsaNI	GTAC	1 cut(s)	621
RseI	CAYNNNNRTG	2 cut(s)	101, 1299
SacI	GAGCTC	1 cut(s)	525
SalI	GTCGAC	1 cut(s)	1013
SatI	GCNGC	2 cut(s)	266, 1110
Sau3AI	GATC	4 cut(s)	149, 309, 345, 730
Sau96I	GGNCC	2 cut(s)	944, 1214
SchI	GAGTC	2 cut(s)	205, 398
ScrFI	CCNGG	3 cut(s)	598, 843, 1212
SduI	GDGCHC	2 cut(s)	525, 778
SfaNI	GCATC	2 cut(s)	430, 1252
SfcI	CTRYAG	2 cut(s)	1164, 1171
SinI	GGWCC	1 cut(s)	944
SmiMI	CAYNNNNRTG	2 cut(s)	101, 1299
SmlI	CTYRAG	3 cut(s)	197, 206, 608
SmoI	CTYRAG	3 cut(s)	197, 206, 608
SphI	GCATGC	1 cut(s)	958
Sse9I	AATT	6 cut(s)	90, 379, 491, 506, 1224, 1309
SseBI	AGGCCT	2 cut(s)	286, 430
SsiI	CCGC	4 cut(s)	443, 712, 863, 1109
SspMI	CTAG	3 cut(s)	35, 693, 807
SstI	GAGCTC	1 cut(s)	525
StuI	AGGCCT	2 cut(s)	286, 430
StyD4I	CCNGG	3 cut(s)	596, 841, 1210
StyI	CCWWGG	2 cut(s)	663, 932
TaaI	ACNGT	7 cut(s)	620, 630, 658, 773, 1049, 1175, 1274
TaqI	TCGA	2 cut(s)	214, 1014
TasI	AATT	6 cut(s)	90, 379, 491, 506, 1224, 1309
TatI	WGTACW	1 cut(s)	620
TauI	GCSGC	1 cut(s)	1112
TscAI	CASTG	6 cut(s)	175, 319, 633, 692, 1180, 1279
TseFI	GTSAC	2 cut(s)	170, 401
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	2 cut(s)	170, 401
TspDTI	ATGAA	2 cut(s)	17, 573
TspRI	CASTG	6 cut(s)	175, 319, 633, 692, 1180, 1279
Van91I	CCANNNNNTGG	1 cut(s)	970
VpaK11BI	GGWCC	1 cut(s)	944
XapI	RAATTY	1 cut(s)	1309
XceI	RCATGY	1 cut(s)	958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	971
XmiI	GTMKAC	3 cut(s)	717, 787, 1014
XspI	CTAG	3 cut(s)	35, 693, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.