AT2G19510

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011216
Physical Location & Seq
Forward (+)
8453200 .. 8453713
514 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19510.1

Sequence Viewer

Length: 363 bp
ATGGAACCACTAGGAGATCGTCGTCCTTGCTGCGTATGTATCACCAAAAATAGAAATTGTCCTAGATTCTGCGAATATGCGGAATACTTTCCATATGAGTTGCGAAGTCATTATGAAAGTACTAATGAATTGTTTGGCACACCAAAGATCATTAAGATGATGAGGCATGCTCCTGAAGAAAAAAAACAAATGCTTGCAACTTCCATAATCATGGAAGGTAATGCTTGGACAAATGATCCTGTAAGTGGTGGATTTGGTATGGTGCAAAAGATCATGTGGAAGATTATGTTACACAAAGCCTACCTTCATGAACTCGAGGAGAAGATTAAGGAAGAGAAGGAAAAAATCGAGCTTCATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

120

Amino Acids

14.21

Weight (kDa)

6.95

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 9 - 105 1.8e-23 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 245
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
AlwI GGATC 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 314
BbvI GCAGC 1 cut(s) 17
BfaI CTAG 2 cut(s) 11, 63
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 6
BplI GAGNNNNNCTC 2 cut(s) 154, 186
Bsc4I CCNNNNNNNGG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 314
Bsp143I GATC 4 cut(s) 16, 147, 235, 270
BspACI CCGC 1 cut(s) 80
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 230
BssMI GATC 4 cut(s) 16, 147, 235, 270
Bst6I CTCTTC 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 168, 195
BstKTI GATC 4 cut(s) 19, 150, 238, 273
BstMBI GATC 4 cut(s) 16, 147, 235, 270
BstNSI RCATGY 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 17
BstXI CCANNNNNNTGG 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 168, 195
CciI TCATGA 1 cut(s) 307
Csp6I GTAC 1 cut(s) 120
CviAII CATG 4 cut(s) 167, 211, 274, 308
CviJI RGCY 2 cut(s) 299, 352
CviKI_1 RGCY 2 cut(s) 299, 352
CviQI GTAC 1 cut(s) 120
DpnI GATC 4 cut(s) 18, 149, 237, 272
DpnII GATC 4 cut(s) 16, 147, 235, 270
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 314
FaeI CATG 4 cut(s) 170, 214, 277, 311
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 4 cut(s) 166, 210, 273, 307
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 2 cut(s) 11, 63
GluI GCNGC 1 cut(s) 31
Hin1II CATG 4 cut(s) 170, 214, 277, 311
HinfI GANTC 1 cut(s) 66
HphI GGTGA 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 173, 308
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 209, 314, 331
HpyCH4V TGCA 2 cut(s) 197, 265
Hsp92II CATG 4 cut(s) 170, 214, 277, 311
Kzo9I GATC 4 cut(s) 16, 147, 235, 270
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 2 cut(s) 186, 252
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 11, 63
MaeIII GTNAC 1 cut(s) 288
MalI GATC 4 cut(s) 18, 149, 237, 272
MboI GATC 4 cut(s) 16, 147, 235, 270
MboII GAAGA 4 cut(s) 188, 292, 334, 344
MluCI AATT 2 cut(s) 55, 128
MnlI CCTC 2 cut(s) 156, 310
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 3 cut(s) 153, 327, 361
MslI CAYNNNNRTG 2 cut(s) 155, 209
NdeI CATATG 1 cut(s) 94
NdeII GATC 4 cut(s) 16, 147, 235, 270
NlaIII CATG 4 cut(s) 170, 214, 277, 311
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 170
PaeI GCATGC 1 cut(s) 170
PaeR7I CTCGAG 1 cut(s) 314
PagI TCATGA 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 1 cut(s) 314
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 2 cut(s) 155, 209
SaqAI TTAA 3 cut(s) 153, 327, 361
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 4 cut(s) 16, 147, 235, 270
ScaI AGTACT 1 cut(s) 121
SetI ASST 3 cut(s) 220, 306, 354
Sfr274I CTCGAG 1 cut(s) 314
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 155, 209
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SphI GCATGC 1 cut(s) 170
Sse9I AATT 2 cut(s) 55, 128
SsiI CCGC 1 cut(s) 80
SspMI CTAG 2 cut(s) 11, 63
TaqI TCGA 2 cut(s) 315, 348
TasI AATT 2 cut(s) 55, 128
TatI WGTACW 1 cut(s) 119
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 3 cut(s) 153, 327, 361
Tru9I TTAA 3 cut(s) 153, 327, 361
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 5 cut(s) 129, 141, 296, 324, 344
XceI RCATGY 1 cut(s) 170
XhoI CTCGAG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 2 cut(s) 11, 63
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.